View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5220_high_10 (Length: 361)
Name: NF5220_high_10
Description: NF5220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5220_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 43272815 - 43273130
Alignment:
| Q |
1 |
agttgaatccaaatcaaccatggaattctatagctctctcttatgaactcgtctaacatgttaattaattaatgattataaacataggatttgatttgtg |
100 |
Q |
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| T |
43272815 |
agttgaatccaaatcaaccatggaattctatagctctctcttatgaactcgtctaacatgttaattaat----gattattaacataggatttgatttgtg |
43272910 |
T |
|
| Q |
101 |
ataatnnnnnnnttatgaacggagagaagaaagaaaggaaggaattatgagaagttttggttgagttgaattgaagtggaagatacgttaaggtctagaa |
200 |
Q |
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| T |
43272911 |
ataataaaaaaattatgaacggagagaagaaagaaaggaaggaattatgagaagttttggttgagttgaattgaagtggaagatacgttaaagtctagaa |
43273010 |
T |
|
| Q |
201 |
taaggaaaatgaatgaatattaaattaaagtcataaaataaacaagttaaaatgacacatatgaatgaatgatcacgagtcacgcgtgtttctacgcgtc |
300 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43273011 |
taaggaaaatgaatgaat-----attaaagtcataaaataaacaagttaaaatgacacatatgaatgaatgatcacgagtcacgcgtgtttctacgcgtc |
43273105 |
T |
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| Q |
301 |
gtatgcaatttgcaaaccttgtttg |
325 |
Q |
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||||||||||||||||||||||||| |
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| T |
43273106 |
gtatgcaatttgcaaaccttgtttg |
43273130 |
T |
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