View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5220_high_2 (Length: 512)
Name: NF5220_high_2
Description: NF5220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5220_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 18 - 506
Target Start/End: Complemental strand, 35733072 - 35732599
Alignment:
| Q |
18 |
aaaccttccaagaaggaggagtattgagattttacactggatttgcagaccattactctaggatagtaggattgctccttaccttgcggtattgttgcta |
117 |
Q |
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| T |
35733072 |
aaaccttccaagaaggaggagtattgagattttacactggatttgcggaccattactctaggat--------tgctccttaccttgcggtattgttgcta |
35732981 |
T |
|
| Q |
118 |
cttattaatttttgaatatatatattaaatttcaacggtattccatgtttattaaccattgattatcatatgggctatggcagatggttgctattttgac |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
35732980 |
cttattaatttttgaatatatatattaaatttcaacggtattccatgtttattaaccattgattatcatatgg-------cagatggttgctattttgac |
35732888 |
T |
|
| Q |
218 |
attctttctcgaggatgattcttgttcatggtatataatccttcccttattttatattttgcaataatatattgattttataccagccaatggttatact |
317 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35732887 |
attctttctcgaggatgattgttgttcatggtatataatccttcccttattttatattttgcaataatatattgattttataccagccaatggttatacg |
35732788 |
T |
|
| Q |
318 |
ggtctctatttctccccttgtttcttttgtgtgcaggtctccaagcaatgtaatcaagagtattgtgaactacattccctttgtgtagaaaattgtgttt |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
35732787 |
ggtctctatttctccccttgtttcttttgtgtgcaggtctccaagcagagtaatcaagagtattgtgaaatacattccctttgtgtagaaaattgtgttt |
35732688 |
T |
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| Q |
418 |
ttgattgaaacttgtaaatatctaatctgtatagaaatttgtggttgtggttggaaacatgtaaatgcttaatccgttcagaataatct |
506 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35732687 |
ttgattgaaacttgtaaatatctaatctgtatagaaatttgtggttgtggttggaaacatgtaaatgcttaatccgttcagaataatct |
35732599 |
T |
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