View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5220_high_3 (Length: 424)

Name: NF5220_high_3
Description: NF5220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5220_high_3
NF5220_high_3
[»] chr7 (8 HSPs)
chr7 (4-414)||(6889039-6889452)
chr7 (54-193)||(6844078-6844215)
chr7 (219-414)||(6844262-6844457)
chr7 (226-412)||(6848709-6848895)
chr7 (64-185)||(9235845-9235966)
chr7 (52-115)||(30598302-30598365)
chr7 (78-184)||(32413597-32413703)
chr7 (219-275)||(30598121-30598177)
[»] chr6 (7 HSPs)
chr6 (81-193)||(7115536-7115648)
chr6 (81-193)||(7120608-7120720)
chr6 (81-193)||(7124012-7124124)
chr6 (81-184)||(8656650-8656753)
chr6 (81-193)||(7140726-7140838)
chr6 (81-193)||(8680340-8680452)
chr6 (81-184)||(7175433-7175536)
[»] chr3 (11 HSPs)
chr3 (78-193)||(7058808-7058923)
chr3 (79-184)||(476013-476118)
chr3 (107-184)||(1186233-1186310)
chr3 (107-184)||(1204297-1204374)
chr3 (107-184)||(1304716-1304793)
chr3 (105-185)||(778205-778285)
chr3 (144-184)||(5361037-5361077)
chr3 (141-184)||(480987-481030)
chr3 (69-151)||(20995103-20995185)
chr3 (138-196)||(21537070-21537128)
chr3 (378-414)||(13459901-13459937)
[»] chr5 (1 HSPs)
chr5 (141-184)||(33958083-33958126)
[»] chr1 (1 HSPs)
chr1 (81-184)||(14288895-14288998)
[»] scaffold0438 (1 HSPs)
scaffold0438 (106-184)||(5318-5396)
[»] chr2 (1 HSPs)
chr2 (78-128)||(7222125-7222175)
[»] chr8 (1 HSPs)
chr8 (79-200)||(27701889-27702010)
[»] chr4 (1 HSPs)
chr4 (100-168)||(3978095-3978163)


Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 4 - 414
Target Start/End: Original strand, 6889039 - 6889452
Alignment:
Q  4 cttactgactcacaggttctgaaacaatgaagccaggaagnnnnnnntacaacgacgatgtaaaagaagat------cgcctcagtgatttacccgagtg 97  Q
    |||||| |||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||      ||||||||||| |||||||| ||    
T  6889039 cttactcactcacaggttctgaaacaatgaagccaggaagaaaaaaatacaacgacgatgtaaaagaagatgaagatcgcctcagtgacttacccgattg 6889138  T
Q  98 tgttattcttcacatactctcttttttggacaccatcgacgctgttcaaacttgcattctatccaaaagatggaacaatctctggaaatatcttcctacc 197  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6889139 tgttattcttcacatactctcttttttggacaccatagacgctgttcaaacttgcattctatccaaaagatggaacaatctctggaaatatcttcctacc 6889238  T
Q  198 cttgtattattaagttctacaaataaatttgtgtctcgcattttgtctcttcgtaatgtgtcaaccccactgcgcgctctccattttcagcgccatggta 297  Q
    ||| ||||   ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  6889239 cttatatt---aagttcttcaaataaatttgtgtctcgcattttgtctcttcgtaatgcgtcaaccccactgcgcgctctccattttcagcgccatggta 6889335  T
Q  298 ctatgtatccccgtctactccaacggatgatcaaatatgctgtttcacatcacgtccaggaattaagtatcaatctcagctgtgatattcaacattttcc 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6889336 ctatgtatccccgtctactccaacggatgatcaaatatgctgtttcacatcacgtccaggaattaagtatcaatctcagctctgatattcaacattttcc 6889435  T
Q  398 aacttgcttattttcat 414  Q
    |||||||||||||||||    
T  6889436 aacttgcttattttcat 6889452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 54 - 193
Target Start/End: Original strand, 6844078 - 6844215
Alignment:
Q  54 aacgacgatgtaaaagaagatcgcctcagtgatttacccgagtgtgttattcttcacatactctcttttttggacaccatcgacgctgttcaaacttgca 153  Q
    |||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||  | ||   |||||||||||||||||    
T  6844078 aacgacgatgtagaagaagaccgcctcagtgatttacccgattgtgttattcttcacatactctcttttttggatgcaat--gcgctgttcaaacttgca 6844175  T
Q  154 ttctatccaaaagatggaacaatctctggaaatatcttcc 193  Q
    ||||||||||||||||||||||||| |||||| |||||||    
T  6844176 ttctatccaaaagatggaacaatctttggaaacatcttcc 6844215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 219 - 414
Target Start/End: Original strand, 6844262 - 6844457
Alignment:
Q  219 aataaatttgtgtctcgcattttgtctcttcgtaatgtgtcaaccccactgcgcgctctccattttcagcgccatggtactatgtatccccgtctactcc 318  Q
    ||||||||||||||||| |||||||||||||||||||    || | ||||||||  |||||||||| ||||| |||||||| || | | |||| ||||||    
T  6844262 aataaatttgtgtctcgtattttgtctcttcgtaatgcaaaaagctcactgcgcattctccattttgagcgcgatggtactgtgcagcaccgtttactcc 6844361  T
Q  319 aacggatgatcaaatatgctgtttcacatcacgtccaggaattaagtatcaatctcagctgtgatattcaacattttccaacttgcttattttcat 414  Q
    |||||||| |||||||||||||||||||  | |||||| ||||||||||||||| ||  | ||||||||||||||||||||||||||| |||||||    
T  6844362 aacggatggtcaaatatgctgtttcacacaatgtccagcaattaagtatcaatcccatatctgatattcaacattttccaacttgcttcttttcat 6844457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 226 - 412
Target Start/End: Original strand, 6848709 - 6848895
Alignment:
Q  226 ttgtgtctcgcattttgtctcttcgtaatgtgtcaaccccactgcgcgctctccattttcagcgccatggtactatgtatccccgtctactccaacggat 325  Q
    |||||||||| |||||||||||||||||||  |||||||||||||||  |||| ||||| ||||| |||||| | || |  || ||||||| |||| |||    
T  6848709 ttgtgtctcgtattttgtctcttcgtaatgcatcaaccccactgcgctatctcgattttgagcgcgatggtattgtggagacctgtctactgcaacagat 6848808  T
Q  326 gatcaaatatgctgtttcacatcacgtccaggaattaagtatcaatctcagctgtgatattcaacattttccaacttgcttattttc 412  Q
      ||||||||||| |||||||||| ||| | || ||||| |||| | ||||||||||||||||| ||||| |||||||||| |||||    
T  6848809 cttcaaatatgctttttcacatcatgtcgaagagttaaggatcagtatcagctgtgatattcaagatttttcaacttgcttcttttc 6848895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 64 - 185
Target Start/End: Complemental strand, 9235966 - 9235845
Alignment:
Q  64 taaaagaagatcgcctcagtgatttacccgagtgtgttattcttcacatactctcttttttggacaccatcgacgctgttcaaacttgcattctatccaa 163  Q
    |||||||||| ||||||| |||||||||||| |||||||||||||||||| ||||| |||||||| ||      | |||||||||||||||||| |||||    
T  9235966 taaaagaagaccgcctcaatgatttacccgattgtgttattcttcacataatctctgttttggacgccgaatgtgttgttcaaacttgcattctctccaa 9235867  T
Q  164 aagatggaacaatctctggaaa 185  Q
    ||||||||||||||| ||||||    
T  9235866 aagatggaacaatctttggaaa 9235845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 52 - 115
Target Start/End: Complemental strand, 30598365 - 30598302
Alignment:
Q  52 acaacgacgatgtaaaagaagatcgcctcagtgatttacccgagtgtgttattcttcacatact 115  Q
    |||||||| |||||||||||||||||||||||||||||||| | |||||| |||||| ||||||    
T  30598365 acaacgactatgtaaaagaagatcgcctcagtgatttacccaattgtgttcttcttcgcatact 30598302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 78 - 184
Target Start/End: Original strand, 32413597 - 32413703
Alignment:
Q  78 ctcagtgatttacccgagtgtgttattcttcacatactctcttttttggacaccatcgacgctgttcaaacttgcattctatccaaaagatggaacaatc 177  Q
    |||||||||||| | || |||||| | |||||||||||||| | |||| ||||||   |||| ||||||||||||||| | |||| ||||||||| ||||    
T  32413597 ctcagtgatttatctgattgtgttttacttcacatactctcctctttgaacaccaaacacgccgttcaaacttgcattttgtccacaagatggaagaatc 32413696  T
Q  178 tctggaa 184  Q
    |||||||    
T  32413697 tctggaa 32413703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 30598177 - 30598121
Alignment:
Q  219 aataaatttgtgtctcgcattttgtctcttcgtaatgtgtcaaccccactgcgcgct 275  Q
    |||| |||||||||||| ||||||| ||||||| ||||||||||||| |||| ||||    
T  30598177 aatagatttgtgtctcgtattttgtgtcttcgtgatgtgtcaaccccgctgcacgct 30598121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 7e-19; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 81 - 193
Target Start/End: Complemental strand, 7115648 - 7115536
Alignment:
Q  81 agtgatttacccgagtgtgttattcttcacatactctcttttttggacaccatcgacgctgttcaaacttgcattctatccaaaagatggaacaatctct 180  Q
    ||||||||||| || |||||| | ||||||||||||||||||||| ||||||   |||| |||||||||||  || | |||||||||||||| |||||||    
T  7115648 agtgatttacctgattgtgttttacttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctct 7115549  T
Q  181 ggaaatatcttcc 193  Q
    |||| | ||||||    
T  7115548 ggaagtgtcttcc 7115536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 81 - 193
Target Start/End: Complemental strand, 7120720 - 7120608
Alignment:
Q  81 agtgatttacccgagtgtgttattcttcacatactctcttttttggacaccatcgacgctgttcaaacttgcattctatccaaaagatggaacaatctct 180  Q
    ||||||||||| || |||||| | ||||||||||||||||||||| ||||||   |||| |||||||||||  || | |||||||||||||| |||||||    
T  7120720 agtgatttacctgattgtgttttacttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctct 7120621  T
Q  181 ggaaatatcttcc 193  Q
    |||| | ||||||    
T  7120620 ggaagtgtcttcc 7120608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 81 - 193
Target Start/End: Complemental strand, 7124124 - 7124012
Alignment:
Q  81 agtgatttacccgagtgtgttattcttcacatactctcttttttggacaccatcgacgctgttcaaacttgcattctatccaaaagatggaacaatctct 180  Q
    ||||||||||| || |||||| | ||||||||||||||||||||| ||||||   |||| |||||||||||  || | |||||||||||||| |||||||    
T  7124124 agtgatttacctgattgtgttttacttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctct 7124025  T
Q  181 ggaaatatcttcc 193  Q
    |||| | ||||||    
T  7124024 ggaagtgtcttcc 7124012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 81 - 184
Target Start/End: Complemental strand, 8656753 - 8656650
Alignment:
Q  81 agtgatttacccgagtgtgttattcttcacatactctcttttttggacaccatcgacgctgttcaaacttgcattctatccaaaagatggaacaatctct 180  Q
    |||||||| ||||| |||||| | ||||||||||||||||||||| ||||||   |||| |||||||||||  || |  ||||||||||||| |||||||    
T  8656753 agtgatttccccgattgtgttttacttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttggccaaaagatggaagaatctct 8656654  T
Q  181 ggaa 184  Q
    ||||    
T  8656653 ggaa 8656650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 81 - 193
Target Start/End: Complemental strand, 7140838 - 7140726
Alignment:
Q  81 agtgatttacccgagtgtgttattcttcacatactctcttttttggacaccatcgacgctgttcaaacttgcattctatccaaaagatggaacaatctct 180  Q
    |||||||||||||| |||||| | ||||||||||||||||||||| | || |   |||| ||||||||||| ||| | |||||||||||||| ||| | |    
T  7140838 agtgatttacccgactgtgttttacttcacatactctcttttttgaatactaaatacgcagttcaaacttgtattttgtccaaaagatggaagaatatat 7140739  T
Q  181 ggaaatatcttcc 193  Q
    |||| | ||||||    
T  7140738 ggaagtgtcttcc 7140726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 193
Target Start/End: Complemental strand, 8680452 - 8680340
Alignment:
Q  81 agtgatttacccgagtgtgttattcttcacatactctcttttttggacaccatcgacgctgttcaaacttgcattctatccaaaagatggaacaatctct 180  Q
    ||||||||| |||| |||||| | ||||||||||||||||||||| | || |   |||| ||||||||||| ||| | |||||||||||||| ||| | |    
T  8680452 agtgatttagccgactgtgttttacttcacatactctcttttttgaatactaaatacgcagttcaaacttgtattttgtccaaaagatggaagaatatat 8680353  T
Q  181 ggaaatatcttcc 193  Q
    |||| | ||||||    
T  8680352 ggaagtgtcttcc 8680340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 81 - 184
Target Start/End: Complemental strand, 7175536 - 7175433
Alignment:
Q  81 agtgatttacccgagtgtgttattcttcacatactctcttttttggacaccatcgacgctgttcaaacttgcattctatccaaaagatggaacaatctct 180  Q
    ||||| |||||||| |||||| | |||||||||||||| || ||  | ||||   |||| ||||||||||||||| ||||||  |||||||| |||||||    
T  7175536 agtgagttacccgattgtgttttacttcacatactctccttgttaaaaaccaagcacgcagttcaaacttgcattttatccactagatggaagaatctct 7175437  T
Q  181 ggaa 184  Q
    ||||    
T  7175436 ggaa 7175433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 78 - 193
Target Start/End: Complemental strand, 7058923 - 7058808
Alignment:
Q  78 ctcagtgatttacccgagtgtgttattcttcacatactctcttttttggacaccatcgacgctgttcaaacttgcattctatccaaaagatggaacaatc 177  Q
    |||||||  |||||||||||| || | |||||||| ||||| ||||||||| | |  || || || |||||||| ||||| ||||||  |||||| ||||    
T  7058923 ctcagtgtcttacccgagtgtattctacttcacattctctcctttttggaccctaaagaggcggtccaaacttgtattctctccaaatcatggaagaatc 7058824  T
Q  178 tctggaaatatcttcc 193  Q
    ||||||||||||||||    
T  7058823 tctggaaatatcttcc 7058808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 79 - 184
Target Start/End: Original strand, 476013 - 476118
Alignment:
Q  79 tcagtgatttacccgagtgtgttattcttcacatactctcttttttggacaccatcgacgctgttcaaacttgcattctatccaaaagatggaacaatct 178  Q
    ||||||||||| | || ||| || | ||||||| |||||| |||||  || |||  || || ||||||||||| ||| ||||||||||||||| ||||||    
T  476013 tcagtgatttatcagattgtattctccttcacacactctcctttttaaacgccaaagaagccgttcaaacttgtattttatccaaaagatggatcaatct 476112  T
Q  179 ctggaa 184  Q
    ||||||    
T  476113 ctggaa 476118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 107 - 184
Target Start/End: Original strand, 1186233 - 1186310
Alignment:
Q  107 tcacatactctcttttttggacaccatcgacgctgttcaaacttgcattctatccaaaagatggaacaatctctggaa 184  Q
    |||||||||||| |||||| |  |||  || || ||||||||||||||| |||| |||||||||| ||||||||||||    
T  1186233 tcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatcgaaaagatggatcaatctctggaa 1186310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 107 - 184
Target Start/End: Original strand, 1204297 - 1204374
Alignment:
Q  107 tcacatactctcttttttggacaccatcgacgctgttcaaacttgcattctatccaaaagatggaacaatctctggaa 184  Q
    |||||||||||| |||||| |  |||  || || ||||||||||||||| |||| |||||||||| ||||||||||||    
T  1204297 tcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatcgaaaagatggatcaatctctggaa 1204374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 107 - 184
Target Start/End: Complemental strand, 1304793 - 1304716
Alignment:
Q  107 tcacatactctcttttttggacaccatcgacgctgttcaaacttgcattctatccaaaagatggaacaatctctggaa 184  Q
    |||||||||||| |||||| |  |||  || || ||||||||||||||| |||| |||||||||| ||||||||||||    
T  1304793 tcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatcgaaaagatggatcaatctctggaa 1304716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 185
Target Start/End: Complemental strand, 778285 - 778205
Alignment:
Q  105 cttcacatactctcttttttggacaccatcgacgctgttcaaacttgcattctatccaaaagatggaacaatctctggaaa 185  Q
    ||||||||||| ||||||||| |  |||  || || || |||||||||||| | ||||||||||||| |||||||||||||    
T  778285 cttcacatactatcttttttgaaagccaaagaggcagtccaaacttgcattttgtccaaaagatggatcaatctctggaaa 778205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 5361077 - 5361037
Alignment:
Q  144 caaacttgcattctatccaaaagatggaacaatctctggaa 184  Q
    |||||||||||| ||||||||||||||| ||||||||||||    
T  5361077 caaacttgcattttatccaaaagatggaccaatctctggaa 5361037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 184
Target Start/End: Original strand, 480987 - 481030
Alignment:
Q  141 gttcaaacttgcattctatccaaaagatggaacaatctctggaa 184  Q
    ||||||||||| ||| ||||||||||||||| ||||||||||||    
T  480987 gttcaaacttgtattttatccaaaagatggatcaatctctggaa 481030  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 151
Target Start/End: Complemental strand, 20995185 - 20995103
Alignment:
Q  69 gaagatcgcctcagtgatttacccgagtgtgttattcttcacatactctcttttttggacaccatcgacgctgttcaaacttg 151  Q
    |||||| | |||||||| || |||||  ||||||| |||||||| ||||| ||| || ||||||  |||||||||||||||||    
T  20995185 gaagatagactcagtgacttgcccgaaagtgttatccttcacattctctcctttctgaacaccaaagacgctgttcaaacttg 20995103  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 196
Target Start/End: Original strand, 21537070 - 21537128
Alignment:
Q  138 gctgttcaaacttgcattctatccaaaagatggaacaatctctggaaatatcttcctac 196  Q
    |||||||||||||| ||  ||||||||||||||||  |||| |||||| ||||||||||    
T  21537070 gctgttcaaacttgtatcttatccaaaagatggaaggatctttggaaacatcttcctac 21537128  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 414
Target Start/End: Original strand, 13459901 - 13459937
Alignment:
Q  378 tgtgatattcaacattttccaacttgcttattttcat 414  Q
    ||||||||||||||||||||| ||||||| |||||||    
T  13459901 tgtgatattcaacattttccatcttgcttgttttcat 13459937  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 141 - 184
Target Start/End: Complemental strand, 33958126 - 33958083
Alignment:
Q  141 gttcaaacttgcattctatccaaaagatggaacaatctctggaa 184  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||    
T  33958126 gttcaaacttgcattttatccaaaagatggatcaatctctggaa 33958083  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 81 - 184
Target Start/End: Complemental strand, 14288998 - 14288895
Alignment:
Q  81 agtgatttacccgagtgtgttattcttcacatactctcttttttggacaccatcgacgctgttcaaacttgcattctatccaaaagatggaacaatctct 180  Q
    ||||||||||| || || ||| | ||||||||  | ||||||||| | ||||   |||| |||||||||||||| || |||||||||||||| |||||||    
T  14288998 agtgatttacctgattgcgttttacttcacattatgtcttttttgaaaaccaaatacgccgttcaaacttgcatactctccaaaagatggaagaatctct 14288899  T
Q  181 ggaa 184  Q
    ||||    
T  14288898 ggaa 14288895  T

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Target: scaffold0438 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 184
Target Start/End: Original strand, 5318 - 5396
Alignment:
Q  106 ttcacatactctcttttttggacaccatcgacgctgttcaaacttgcattctatccaaaagatggaacaatctctggaa 184  Q
    |||||||||| || |||||| |||| |  || || |||||||| |||||| ||||||||||||||| ||||||||||||    
T  5318 ttcacatactgtcctttttgaacacaagagaggccgttcaaacatgcattttatccaaaagatggatcaatctctggaa 5396  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 7222125 - 7222175
Alignment:
Q  78 ctcagtgatttacccgagtgtgttattcttcacatactctcttttttggac 128  Q
    ||||| ||||||||||||| |||| |||||||||||||||| |||||||||    
T  7222125 ctcagcgatttacccgagtctgttcttcttcacatactctcctttttggac 7222175  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 79 - 200
Target Start/End: Complemental strand, 27702010 - 27701889
Alignment:
Q  79 tcagtgatttacccgagtgtgttattcttcacatactctcttttttggacaccatcgacgctgttcaaacttgcattctatccaaaagatggaacaatct 178  Q
    |||||||||||||||| ||  || |  ||||||||||||| | ||| || ||||   | || |||||||||  |||||| |||| |||||||||||||||    
T  27702010 tcagtgatttacccgattgcattctctttcacatactctcctctttagaaaccaaacatgccgttcaaactaccattctttccacaagatggaacaatct 27701911  T
Q  179 ctggaaatatcttcctaccctt 200  Q
    |||||||  |||||| ||||||    
T  27701910 ctggaaacgtcttccaaccctt 27701889  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 168
Target Start/End: Original strand, 3978095 - 3978163
Alignment:
Q  100 ttattcttcacatactctcttttttggacaccatcgacgctgttcaaacttgcattctatccaaaagat 168  Q
    ||||||||||||||||||| |||||  |||||| | |||| |||||||||||| || |||||| |||||    
T  3978095 ttattcttcacatactctcgtttttaaacaccaaccacgcggttcaaacttgcgttttatccacaagat 3978163  T

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