View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5220_low_11 (Length: 325)
Name: NF5220_low_11
Description: NF5220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5220_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 16 - 317
Target Start/End: Original strand, 11542292 - 11542593
Alignment:
| Q |
16 |
cttccaacaatcttggacatgattttgatagcattgtgacagtctccacatatacgtagattcttgataattctaagcgtagtcctcggcggagtactga |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11542292 |
cttccaacaatcttggacatgattttgatagcattgtgacagtctccacatatacgtagattcttgataattctaagcgtagtcctcggcggagtactga |
11542391 |
T |
|
| Q |
116 |
tgagaccataagcaattgccaaacgttcactatgatattgcaaagccttttctttttcctcctcatcaatgtcatggagaacatatctcgtatcaggaac |
215 |
Q |
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|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
11542392 |
tgagaccataagcaattgccaaacattcactatgatactgcaaagccttttctttttcctcttcatcaatgtcatggagaacatatctcgtatcaggaac |
11542491 |
T |
|
| Q |
216 |
ataacctgcttccctcatctgcccggccaaacttctcaatttcacatcactctcttctttatacggcatattacaccgatattcacttactctattcttc |
315 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11542492 |
ataacctgcttccctcatctgcccggtcaaacttctcaatttcacatcactctcttctttatacggcatattacaccgatattcacttactctattcttc |
11542591 |
T |
|
| Q |
316 |
tc |
317 |
Q |
| |
|
|| |
|
|
| T |
11542592 |
tc |
11542593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 16 - 317
Target Start/End: Original strand, 34614837 - 34615138
Alignment:
| Q |
16 |
cttccaacaatcttggacatgattttgatagcattgtgacagtctccacatatacgtagattcttgataattctaagcgtagtcctcggcggagtactga |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
34614837 |
cttccaacaatcttggacatgattttgatagcattgtgacagtctccacatatacgtagattcttgataattctaagagtagtcctcggcggagtactga |
34614936 |
T |
|
| Q |
116 |
tgagaccataagcaattgccaaacgttcactatgatattgcaaagccttttctttttcctcctcatcaatgtcatggagaacatatctcgtatcaggaac |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
34614937 |
tgagaccataagcaattgccaaacgttcactatgatactgcaaagccttttccttttcctcctcatcaatgtcatggagaacgtatctcgtatcaggaac |
34615036 |
T |
|
| Q |
216 |
ataacctgcttccctcatctgcccggccaaacttctcaatttcacatcactctcttctttatacggcatattacaccgatattcacttactctattcttc |
315 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34615037 |
ataacctgcttccctcatctgcccggtcaaacctctcaatttcacatcaccctcttctttatacggcatattacaccgatattcacttactctattcttc |
34615136 |
T |
|
| Q |
316 |
tc |
317 |
Q |
| |
|
|| |
|
|
| T |
34615137 |
tc |
34615138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 16 - 317
Target Start/End: Original strand, 34757383 - 34757684
Alignment:
| Q |
16 |
cttccaacaatcttggacatgattttgatagcattgtgacagtctccacatatacgtagattcttgataattctaagcgtagtcctcggcggagtactga |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
34757383 |
cttccaacaatcttggacatgattttgatagcattgtgacagtctccacatatacgtagattcttgataattctaagagtagtcctcggcggagtactga |
34757482 |
T |
|
| Q |
116 |
tgagaccataagcaattgccaaacgttcactatgatattgcaaagccttttctttttcctcctcatcaatgtcatggagaacatatctcgtatcaggaac |
215 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
34757483 |
tgagaccataagcaattgccaaacattcactatgatactgcaaagccttttctttttcctcctcatcaatgtcatggagaacgtatctcgtatcaggaac |
34757582 |
T |
|
| Q |
216 |
ataacctgcttccctcatctgcccggccaaacttctcaatttcacatcactctcttctttatacggcatattacaccgatattcacttactctattcttc |
315 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
34757583 |
ataacctgcttccctcatctgcccggtcaaacctctcaatttctcatcatcctcttcttcatacggcatattacaccgatattcacttactctatttttc |
34757682 |
T |
|
| Q |
316 |
tc |
317 |
Q |
| |
|
|| |
|
|
| T |
34757683 |
tc |
34757684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 17 - 317
Target Start/End: Original strand, 34742277 - 34742578
Alignment:
| Q |
17 |
ttccaacaatcttggacatgattttgatagcattgtgacagtctccacatatacgtagattcttgataattctaagcgtagtcctcggcggagtactgat |
116 |
Q |
| |
|
|||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
34742277 |
ttcccacaatcttagacatgaatttgatagcattgtgacagtctccacatatacgtagattcttgataattctaagcatagtccttggcggagtactgat |
34742376 |
T |
|
| Q |
117 |
gagaccataagcaattgccaaacgttcactatgatattgcaaagccttttctttttcctcctcatcaatgtcatggagaacatatctcgtatcaggaaca |
216 |
Q |
| |
|
|||||||||||| ||||||||||| || ||||||||| |||| || || || ||||||||||||||||| |||||||| || |||||||||||||||||| |
|
|
| T |
34742377 |
gagaccataagctattgccaaacgctcgctatgatatcgcaaggctttctccttttcctcctcatcaatatcatggagtacgtatctcgtatcaggaaca |
34742476 |
T |
|
| Q |
217 |
taacctgcttccctcatctgcccggccaaacttctcaatttcacatcactctcttc-tttatacggcatattacaccgatattcacttactctattcttc |
315 |
Q |
| |
|
|||||||||||||| |||||||| | ||||| |||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34742477 |
taacctgcttccctaatctgcccagtcaaacctctcaatttcacatcattgtcttcttttatacggcatattacaccgatattcacttactctattcttc |
34742576 |
T |
|
| Q |
316 |
tc |
317 |
Q |
| |
|
|| |
|
|
| T |
34742577 |
tc |
34742578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 22 - 218
Target Start/End: Original strand, 33779075 - 33779271
Alignment:
| Q |
22 |
acaatcttggacatgattttgatagcattgtgacagtctccacatatacgtagattcttgataattctaagcgtagtcctcggcggagtactgatgagac |
121 |
Q |
| |
|
|||||| | |||||||| ||||| |||||||||||||| ||||| | ||| || ||||||||||| ||||| | || || || |||||||| || |||| |
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|
| T |
33779075 |
acaatcctagacatgatcttgatggcattgtgacagtcaccacagacacgaaggttcttgataatcctaagaggtgttctaggaggagtactaataagac |
33779174 |
T |
|
| Q |
122 |
cataagcaattgccaaacgttcactatgatattgcaaagccttttctttttcctcctcatcaatgtcatggagaacatatctcgtatcaggaacata |
218 |
Q |
| |
|
|||| |||||||| | ||| ||||| || || |||| |||| || ||| | |||| |||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
33779175 |
cataggcaattgctagacgctcactgtggtagagcaaggcctgctcctttgcttcctgatcaatgtcatgaagaacatatcttgtatcaggaacata |
33779271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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