View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5220_low_12 (Length: 274)
Name: NF5220_low_12
Description: NF5220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5220_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 62 - 247
Target Start/End: Original strand, 6888839 - 6889024
Alignment:
| Q |
62 |
ctagttcgtagtgaactgaatatgatttctgttccattttcattcaattcaaaacccttgttcccctacttgtaactttgtaggaccagagtttcaagac |
161 |
Q |
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| T |
6888839 |
ctagttcgtagtgaactgaatatgatttctgttccattttcattcaattcaaaacccttgttccgctacttgtaactttgtaggaccagagtttcaagac |
6888938 |
T |
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| Q |
162 |
aaagctaaggtatcaactccaattcagaagccaattgcgcaatgcattttgaaaacctaacttcgctttttaattttcaatactta |
247 |
Q |
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| T |
6888939 |
aaagctaaggtatcaactccatttcagaagccaattgcgcaatgcattttgaaaacctatcttcgctttttaattttcaatactta |
6889024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 47
Target Start/End: Original strand, 6888808 - 6888838
Alignment:
| Q |
17 |
atgttcaacgtgttcccaattaatattcggg |
47 |
Q |
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| T |
6888808 |
atgttcaacgtgttcccaattaatattcggg |
6888838 |
T |
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