View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5220_low_13 (Length: 257)
Name: NF5220_low_13
Description: NF5220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5220_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 12683281 - 12683043
Alignment:
| Q |
1 |
ccattttctgcatcaaccctgaaatctcctcccataatggccctttaggtccattctcttggtacttcatatcaagagttgttcttagctttatcaatgc |
100 |
Q |
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| T |
12683281 |
ccattttcttcatcaaccctgaaatctcctcccataatggccctttaggtccattctcttggtacttcatatcaagagttgttctcagctttatcaatgc |
12683182 |
T |
|
| Q |
101 |
ctcaacctcagtttttggccacctagaagaacttgcatgcatcatactctcaccattgttatcacttttcgcaacttccatattcgtcacttgctgctgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
12683181 |
ctcaacctcagtttttggccacctagaagaacttgcatgcatcatactctcaccattgttatcacttttcgcaacttccatattcatcacttgctgctgt |
12683082 |
T |
|
| Q |
201 |
tgtacctgaacctgctgttgctgctgctgatgttgtggc |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
12683081 |
tgtacctgaacctgctgttgctgctgctgatgttgtggc |
12683043 |
T |
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