View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5220_low_16 (Length: 222)
Name: NF5220_low_16
Description: NF5220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5220_low_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 97; Significance: 8e-48; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 70 - 209
Target Start/End: Complemental strand, 28654933 - 28654791
Alignment:
| Q |
70 |
ccgagaggcgactcctagcatgtgtataagatga---cataaacataccattgcaataccgtctctcgcagaaagagcgacaatgtcagcacatgacact |
166 |
Q |
| |
|
||||||||| ||||||| |||||||||| ||||| |||| |||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||| |
|
|
| T |
28654933 |
ccgagaggcaactcctaacatgtgtatatgatgatgacatagacataccattgcaataccgtctctagcagaaagagcaacaatatcagcacatgacact |
28654834 |
T |
|
| Q |
167 |
gtcaagggacattctttctcgacagcagctttgatggtgttca |
209 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
28654833 |
gtcaagggacattctttctcaacagcagctttgatggtgttca |
28654791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 28635630 - 28635510
Alignment:
| Q |
89 |
atgtgtataagatgacataaacataccattgcaataccgtctctcgcagaaagagcgacaatgtcagcacatgacactgtcaagggacattctttctcga |
188 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
28635630 |
atgtgtatatgatgacatagacataccattgcaataccgtctctagcagatagagcgacaatgtcagcgcatgacactgtcaagggacattctttctcga |
28635531 |
T |
|
| Q |
189 |
cagcagctttgatggtgttca |
209 |
Q |
| |
|
|||| ||||||||||| |||| |
|
|
| T |
28635530 |
cagctgctttgatggtattca |
28635510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 108 - 204
Target Start/End: Complemental strand, 28663294 - 28663198
Alignment:
| Q |
108 |
aacataccattgcaataccgtctctcgcagaaagagcgacaatgtcagcacatgacactgtcaagggacattctttctcgacagcagctttgatggt |
204 |
Q |
| |
|
|||||||||| ||||| |||||||| || |||||||| |||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
28663294 |
aacataccatggcaattccgtctctagcggaaagagcaacaatgtcggcacatgatactgtcaagggacattctttctccacagcagctttgatggt |
28663198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 109 - 205
Target Start/End: Complemental strand, 28605442 - 28605346
Alignment:
| Q |
109 |
acataccattgcaataccgtctctcgcagaaagagcgacaatgtcagcacatgacactgtcaagggacattctttctcgacagcagctttgatggtg |
205 |
Q |
| |
|
||||||| | |||||||||||||| ||||||||||| ||||||||||| |||||||||||||| ||||||||||| || | |||||||||||||||| |
|
|
| T |
28605442 |
acataccctggcaataccgtctctagcagaaagagcaacaatgtcagcgcatgacactgtcaaaggacattctttttcaagagcagctttgatggtg |
28605346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 28635680 - 28635630
Alignment:
| Q |
13 |
attattctattaagagggataatcatttgacttataagtttcactatgtga |
63 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
28635680 |
attattctattaagttggataatcatttgacttattagtctcactatgtga |
28635630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University