View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5220_low_4 (Length: 422)
Name: NF5220_low_4
Description: NF5220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5220_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 39 - 408
Target Start/End: Original strand, 7988826 - 7989203
Alignment:
| Q |
39 |
atcaatgtctcatcggtaaaaa----tatgtaggatcttgtaattattcttagaggtggcaacattgaccgtgatcaaattttaaagtatgcttggaaaa |
134 |
Q |
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| T |
7988826 |
atcaatgtctcatcggtaaaaaaaaatacgtaggatcttgtaattattcttagaggtggcaacattgaccgtcatcaaattttaacgtatgtttggaaaa |
7988925 |
T |
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| Q |
135 |
actatactgt----acattttaagnnnnnnnntcctaatgtcatcataattttgttaaaatttcaaaacatagattttgccaaatggcatacaacataat |
230 |
Q |
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| T |
7988926 |
actatacatttaaaaaaaaaaaaaaaaaaaaatcctaatgtcatcataattttgttaaaatttcaaaacatagattttgccaaatggcatacaacataat |
7989025 |
T |
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| Q |
231 |
ttcatcaagcacaagtgcacaactaatacaaagattcatttaaaccattttcaaacaacaatctactatttcatcaaatgagatttcttttactaaatca |
330 |
Q |
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| T |
7989026 |
ttcatcaagcacaagtgcacaactaatgcaaacattcatttaaaccactttcaaacaacaatctaccatttcatcaaatgagatttcttttactaaatca |
7989125 |
T |
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| Q |
331 |
aatgagatattttatcgtctttaacattacaacatcaagagaaagatgtcaaaatttatcaaagactgtgaactattt |
408 |
Q |
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| T |
7989126 |
aatgagatatttcatcgtctttaacattgcaacatcaagagaaagatgtcaaaatttatcaaagacggtgaactattt |
7989203 |
T |
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