View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5220_low_7 (Length: 389)
Name: NF5220_low_7
Description: NF5220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5220_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 13 - 374
Target Start/End: Complemental strand, 24728571 - 24728210
Alignment:
| Q |
13 |
aaaatggcctctgagttctatgctaggatcctcccatcctccatacggtgtaccaggagtcggtaaaccagccgtctttctgaaactccaaatcaagcta |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24728571 |
aaaatggcctctgagttctatgctaggatcctcccatcctccatacggtgtaccaggagtcggtaaaccagccgtctttctgaaactccaaatcaagcta |
24728472 |
T |
|
| Q |
113 |
tcaacatccaacattaacaaatactccaaattagtcttctgtgcttgagcatggatagaaccttcaagcaatctcacatccccaagaggaacttctttga |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24728471 |
tcaacatccaacattaacaaatactccaaattagtcttctgtgcttgagcatggatagaaccttcaagcaatctcacatccccaagaggaacttctttga |
24728372 |
T |
|
| Q |
213 |
gaaatccaactggtggcttagacagatcagcattcttcatttccctatacttagcagcccaatcacgttgattttcttccgataaaagcttccttggaag |
312 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
24728371 |
gaaatccaactggtggcttagacagatcggcattcttcatttccctatacttagcagcccagtcacgttggttttcttccgataaaagcttccttggaag |
24728272 |
T |
|
| Q |
313 |
caaatctgcccaagccgattcatcggttggtgtcaaatgatagtgagacatcacttctttct |
374 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
24728271 |
caaatctgcccaagccgattcatcagttggtgtcaaatgatagtgagacatcacttctttct |
24728210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 43 - 290
Target Start/End: Complemental strand, 24719352 - 24719105
Alignment:
| Q |
43 |
ctcccatcctccatacggtgtaccaggagtcggtaaaccagccgtctttctgaaactccaaatcaagctatcaacatccaacattaacaaatactccaaa |
142 |
Q |
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||||||||| ||||| |||| |||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||| ||||| ||||||||||||||| |
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| T |
24719352 |
ctcccatccaccataaggtgcaccaggagtcggtaaaccagccatcttcctgaaactccaaatcaacctatcaacatctaacatcaacaaatactccaaa |
24719253 |
T |
|
| Q |
143 |
ttagtcttctgtgcttgagcatggatagaaccttcaagcaatctcacatccccaagaggaacttctttgagaaatccaactggtggcttagacagatcag |
242 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||| | |
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| T |
24719252 |
ttagtcttctgtgcttgagcatggatagaaccttcaagcaacctcacatccccaagtggaacttctttgagaaatccaacaggtggcttagacacatcgg |
24719153 |
T |
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| Q |
243 |
cattcttcatttccctatacttagcagcccaatcacgttgattttctt |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
24719152 |
cattcttcatttccctatacttagcagcccaatcacgttggttttctt |
24719105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 13 - 374
Target Start/End: Complemental strand, 24689064 - 24688703
Alignment:
| Q |
13 |
aaaatggcctctgagttctatgctaggatcctcccatcctccatacggtgtaccaggagtcggtaaaccagccgtctttctgaaactccaaatcaagcta |
112 |
Q |
| |
|
|||||| ||||||||||| | |||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||| ||| |
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| T |
24689064 |
aaaatgccctctgagttcagtattaggttcctcccatcctccatacggattaccaggagtcggtaaaccagccgtcttcctgaagctccaaatcaaccta |
24688965 |
T |
|
| Q |
113 |
tcaacatccaacattaacaaatactccaaattagtcttctgtgcttgagcatggatagaaccttcaagcaatctcacatccccaagaggaacttctttga |
212 |
Q |
| |
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|||||||| ||||| |||||||||||||||||||||| |||||| ||| || || |||||||| ||||| |||||||||||||| || |||||||| | |
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| T |
24688964 |
tcaacatctaacatcaacaaatactccaaattagtctgctgtgccacagcgtgaatcgaaccttccagcaacctcacatccccaagtggcacttctttca |
24688865 |
T |
|
| Q |
213 |
gaaatccaactggtggcttagacagatcagcattcttcatttccctatacttagcagcccaatcacgttgattttcttccgataaaagcttccttggaag |
312 |
Q |
| |
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||||||| |||||||||||| ||| | | |||||| |||| ||||||| | |||||||||| |||| |||||||| ||||| | |||||||||||| |
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| T |
24688864 |
gaaatcccactggtggcttaaacacacccaaattcttgattttcctatacattaaagcccaatcatgttggttttcttctgataagatcttccttggaag |
24688765 |
T |
|
| Q |
313 |
caaatctgcccaagccgattcatcggttggtgtcaaatgatagtgagacatcacttctttct |
374 |
Q |
| |
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|||| ||||||||| |||||||| |||||||||| |||||| ||||||||||||||||||| |
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|
| T |
24688764 |
caaagttgcccaagcagattcatcagttggtgtcacatgataatgagacatcacttctttct |
24688703 |
T |
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