View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5220_low_8 (Length: 377)
Name: NF5220_low_8
Description: NF5220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5220_low_8 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 12683632 - 12683256
Alignment:
| Q |
1 |
cgtcatcatcgtcataatattcttcttcatctcgacgcggctgatcattctcagtctcagcttcctccatggtcacatccgccccggctgctggtggcac |
100 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12683632 |
cgtcatcatcgtcataatattcttcttcatctcgatgcggccgatcattctcagtctcagcttcctccatggtcacatccgccccggctgctggtggcac |
12683533 |
T |
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| Q |
101 |
ctgttgctgtggaggccactgctgctccggctgaaccatcaacggtgccatcatcgttccctcaggcctcgacgcagcagcagctgcaccctccaccttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12683532 |
ctgttgctgtggaggccactgctgctccggctgaaccatcaacggtgccatcatcgttccctcaggcctcgacgcagcagcagctgcaccctccaccttg |
12683433 |
T |
|
| Q |
201 |
ttcttctgcctgtatagagcatcaagttggtgaaagtaaggacatgtctttgaatcttctggcctcttcttgttgctttccttcactttcttgaaatact |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12683432 |
ttcttctgcctgtatagagcatcaagttggtgaaagtaaggacatgtctttgaatcttctggcctcttcttgttgctttccttcactttcttgaaatact |
12683333 |
T |
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| Q |
301 |
tgttaatgttctcccatttctctttgcacctctttgcattcctattgtaccccattttcttcatcaaccctgaaatc |
377 |
Q |
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| T |
12683332 |
tgttaatgttttcccatttctctttgcacctctttgcattcctattgtaccccattttcttcatcaaccctgaaatc |
12683256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 4e-32; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 231 - 349
Target Start/End: Original strand, 44553311 - 44553429
Alignment:
| Q |
231 |
tgaaagtaaggacatgtctttgaatcttctggcctcttcttgttgctttccttcactttcttgaaatacttgttaatgttctcccatttctctttgcacc |
330 |
Q |
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||||| ||||||||||||||||||||||| || ||||| ||||| || || |||||||||||||| |||||||| || ||||||||||| |||||||||| |
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| T |
44553311 |
tgaaaataaggacatgtctttgaatcttcgggtctctttttgttactctctttcactttcttgaagtacttgtttatattctcccatttttctttgcacc |
44553410 |
T |
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| Q |
331 |
tctttgcattcctattgta |
349 |
Q |
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| T |
44553411 |
tttttgcattcctattgta |
44553429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 269 - 349
Target Start/End: Complemental strand, 44533734 - 44533654
Alignment:
| Q |
269 |
cttgttgctttccttcactttcttgaaatacttgttaatgttctcccatttctctttgcacctctttgcattcctattgta |
349 |
Q |
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|||||| |||||||||| ||||||| | || ||||| || ||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
44533734 |
cttgttactttccttcattttcttgtagtatttgttgatattctcccatttttctttgcacctttttgcattcctattgta |
44533654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 338
Target Start/End: Original strand, 36127420 - 36127466
Alignment:
| Q |
292 |
tgaaatacttgttaatgttctcccatttctctttgcacctctttgca |
338 |
Q |
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| T |
36127420 |
tgaaatacttgttgatattctcccacttctctttgcatctctttgca |
36127466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 149
Target Start/End: Original strand, 44553171 - 44553205
Alignment:
| Q |
115 |
gccactgctgctccggctgaaccatcaacggtgcc |
149 |
Q |
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|||| |||||||||||||||||||||||||||||| |
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| T |
44553171 |
gccattgctgctccggctgaaccatcaacggtgcc |
44553205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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