View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5220_low_9 (Length: 373)
Name: NF5220_low_9
Description: NF5220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5220_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 54881043 - 54881390
Alignment:
| Q |
1 |
gtcagatgtcactaatgcaaccacaactctaaccacgttttaaaatggtctttaattaattaataataaataatatcgtgcgnnnnnnngttgcaggaga |
100 |
Q |
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| T |
54881043 |
gtcagatgtgactaattcaaccacaactctaaccacgttttaaaatggtctttaattaat--------aataatatcttgcgtttttt-gttgcaggaga |
54881133 |
T |
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| Q |
101 |
ggcgtggatatctattttgccaagaagatagagcgattctatgcagagaatgtgaccttccaatccatggagcaaatgaacatacacagaaacataacag |
200 |
Q |
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| T |
54881134 |
ggcgtggatatctattttgccaagaagatagagcgattctatgcagagaatgtgaccttccaatccatggagcaaatcaacatacacagaaacataacag |
54881233 |
T |
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| Q |
201 |
gtttcttctctctggtgttaagctttcaaccaattctttagacccagattcatcatccaccagtattttctctgaagcaagaaactactctagtagatca |
300 |
Q |
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| T |
54881234 |
gtttcttctctctggtgttaagctttcaagcaattctttagacccagattcatcatccaccagtattgtctctgaagcaagaaactactctagtagatca |
54881333 |
T |
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| Q |
301 |
aaagcaaacataataccaacatcagtttccaatgaaaatgcaagttcttcttgcatg |
357 |
Q |
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| T |
54881334 |
aaagcaaacataataccaacatcagtttccaatgaaaatgcaagttcttcttgcatg |
54881390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 91 - 169
Target Start/End: Original strand, 26846544 - 26846622
Alignment:
| Q |
91 |
ttgcaggagaggcgtggatatctattttgccaagaagatagagcgattctatgcagagaatgtgaccttccaatccatg |
169 |
Q |
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| T |
26846544 |
ttgcaggagaggcgtgcatatctattttgcaaagaagacagagcaatactttgcagggaatgtgacattcctatccatg |
26846622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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