View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5221-Insertion-1 (Length: 433)

Name: NF5221-Insertion-1
Description: NF5221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5221-Insertion-1
NF5221-Insertion-1
[»] chr4 (17 HSPs)
chr4 (341-422)||(38676938-38677019)
chr4 (342-422)||(36217869-36217949)
chr4 (342-422)||(38677661-38677741)
chr4 (340-413)||(54208188-54208261)
chr4 (347-422)||(36498905-36498980)
chr4 (347-393)||(40450959-40451005)
chr4 (348-421)||(33164510-33164583)
chr4 (348-392)||(36172194-36172238)
chr4 (347-393)||(24972418-24972464)
chr4 (343-409)||(27992304-27992370)
chr4 (357-423)||(37576541-37576607)
chr4 (358-424)||(47177909-47177975)
chr4 (343-396)||(27992140-27992193)
chr4 (348-409)||(36174584-36174645)
chr4 (348-393)||(46817437-46817482)
chr4 (348-396)||(24974151-24974199)
chr4 (348-404)||(53265809-53265865)
[»] chr7 (10 HSPs)
chr7 (342-421)||(26009369-26009448)
chr7 (342-418)||(26604172-26604248)
chr7 (348-422)||(38790883-38790958)
chr7 (342-424)||(26011952-26012034)
chr7 (360-422)||(28138758-28138820)
chr7 (366-424)||(42548158-42548216)
chr7 (376-425)||(25428727-25428776)
chr7 (348-391)||(48221703-48221746)
chr7 (355-393)||(20379680-20379718)
chr7 (348-421)||(1537251-1537324)
[»] chr1 (19 HSPs)
chr1 (343-425)||(37260913-37260995)
chr1 (344-413)||(35392105-35392174)
chr1 (348-404)||(45688325-45688381)
chr1 (347-393)||(28442950-28442996)
chr1 (340-421)||(5119028-5119109)
chr1 (348-409)||(45691053-45691114)
chr1 (349-409)||(45691196-45691256)
chr1 (349-409)||(45691338-45691398)
chr1 (340-391)||(35391505-35391556)
chr1 (348-421)||(3792560-3792633)
chr1 (348-421)||(39650196-39650269)
chr1 (343-394)||(2093837-2093889)
chr1 (347-423)||(33403130-33403206)
chr1 (342-421)||(11821160-11821239)
chr1 (347-422)||(48025555-48025630)
chr1 (376-421)||(5602944-5602989)
chr1 (370-423)||(42883106-42883159)
chr1 (348-393)||(50069239-50069284)
chr1 (343-399)||(42883754-42883810)
[»] scaffold0041 (1 HSPs)
scaffold0041 (347-432)||(24369-24454)
[»] chr8 (10 HSPs)
chr8 (348-421)||(33220792-33220865)
chr8 (343-422)||(24899066-24899145)
chr8 (348-428)||(5967242-5967322)
chr8 (344-423)||(1349220-1349299)
chr8 (347-421)||(43640977-43641051)
chr8 (349-421)||(14087850-14087922)
chr8 (342-422)||(23558982-23559062)
chr8 (373-421)||(26229068-26229116)
chr8 (373-424)||(37686613-37686664)
chr8 (349-422)||(35841396-35841469)
[»] chr3 (27 HSPs)
chr3 (347-432)||(19866722-19866807)
chr3 (348-421)||(6162687-6162760)
chr3 (345-421)||(30533880-30533956)
chr3 (343-421)||(54528956-54529034)
chr3 (341-398)||(2652934-2652991)
chr3 (349-422)||(53814567-53814640)
chr3 (341-413)||(3539676-3539748)
chr3 (342-394)||(47064891-47064943)
chr3 (342-422)||(50663874-50663954)
chr3 (345-412)||(8150178-8150245)
chr3 (354-421)||(40517534-40517601)
chr3 (357-427)||(4969869-4969939)
chr3 (347-393)||(15042010-15042056)
chr3 (347-393)||(34086844-34086890)
chr3 (348-421)||(35995137-35995210)
chr3 (347-424)||(39688756-39688833)
chr3 (348-393)||(53827666-53827711)
chr3 (277-309)||(54528376-54528408)
chr3 (347-422)||(7666966-7667041)
chr3 (348-427)||(44833464-44833543)
chr3 (348-390)||(2325566-2325608)
chr3 (349-391)||(11342920-11342962)
chr3 (348-428)||(15040674-15040754)
chr3 (343-423)||(26998287-26998367)
chr3 (348-392)||(42947404-42947448)
chr3 (374-422)||(44430417-44430465)
chr3 (349-421)||(53101163-53101235)
[»] chr6 (14 HSPs)
chr6 (343-423)||(806543-806623)
chr6 (389-433)||(18085647-18085691)
chr6 (343-422)||(14431474-14431553)
chr6 (348-422)||(14153353-14153427)
chr6 (345-397)||(7203953-7204005)
chr6 (343-422)||(14430943-14431022)
chr6 (340-423)||(2559616-2559699)
chr6 (347-393)||(17436064-17436110)
chr6 (345-391)||(23608457-23608503)
chr6 (348-393)||(32274212-32274257)
chr6 (348-393)||(35060900-35060945)
chr6 (287-319)||(23608555-23608587)
chr6 (345-409)||(23608981-23609045)
chr6 (357-393)||(25400861-25400897)
[»] chr2 (11 HSPs)
chr2 (342-409)||(37893007-37893074)
chr2 (334-425)||(2675142-2675233)
chr2 (348-399)||(11712980-11713031)
chr2 (348-424)||(12967267-12967344)
chr2 (348-385)||(12969269-12969306)
chr2 (357-421)||(22787999-22788063)
chr2 (347-393)||(11573661-11573707)
chr2 (348-421)||(8273245-8273318)
chr2 (348-421)||(18387241-18387314)
chr2 (357-426)||(20685001-20685070)
chr2 (343-423)||(12965047-12965127)
[»] scaffold0262 (1 HSPs)
scaffold0262 (343-421)||(8384-8462)
[»] chr5 (9 HSPs)
chr5 (343-393)||(17644600-17644650)
chr5 (343-404)||(1145158-1145219)
chr5 (343-404)||(7335550-7335611)
chr5 (346-413)||(16879875-16879943)
chr5 (370-421)||(3758922-3758973)
chr5 (347-422)||(11135740-11135815)
chr5 (348-391)||(30489753-30489796)
chr5 (347-393)||(30491799-30491845)
chr5 (348-409)||(19402004-19402065)
[»] scaffold0163 (1 HSPs)
scaffold0163 (354-424)||(35773-35843)
[»] scaffold1763 (1 HSPs)
scaffold1763 (342-423)||(363-444)


Alignment Details
Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 341 - 422
Target Start/End: Complemental strand, 38677019 - 38676938
Alignment:
Q  341 aacgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattct 422  Q
    ||||| ||||||||||||||| ||||||||| || |||| ||||||||||||||||||||||||  ||||||||||||||||    
T  38677019 aacgtaagttaacatgcgtagaggtattttggacatttattttgggaatgagcaaaaccgtttggataaagaggagaattct 38676938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 342 - 422
Target Start/End: Complemental strand, 36217949 - 36217869
Alignment:
Q  342 acgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattct 422  Q
    |||| |||||||||||||||||| |||||| |||||||||||||||||||| |||||| |||| |||||||| ||||||||    
T  36217949 acgtaagttaacatgcgtaggggcattttggacttttactttgggaatgagtaaaaccatttgagtaaagagcagaattct 36217869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 342 - 422
Target Start/End: Original strand, 38677661 - 38677741
Alignment:
Q  342 acgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattct 422  Q
    |||| |||||||||||| |||| |||||||||  |||||||||||||||| ||||| |||||| |||||||| ||||||||    
T  38677661 acgtaagttaacatgcgcagggatattttgaatatttactttgggaatgaacaaaatcgtttgggtaaagagcagaattct 38677741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 340 - 413
Target Start/End: Complemental strand, 54208261 - 54208188
Alignment:
Q  340 taacgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagag 413  Q
    |||||| ||||||| || ||||||||||||||| | |||||||||||||||||||||||| ||||  |||||||    
T  54208261 taacgtaagttaacttgagtaggggtattttgatcatttactttgggaatgagcaaaaccatttggataaagag 54208188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 347 - 422
Target Start/End: Complemental strand, 36498980 - 36498905
Alignment:
Q  347 agttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattct 422  Q
    ||||||||||| |||||| ||||| |||||||||||||||||||||| | || ||||| |||| ||| ||||||||    
T  36498980 agttaacatgcataggggcattttcaacttttactttgggaatgagcgatactgtttgagtaatgagcagaattct 36498905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 393
Target Start/End: Complemental strand, 40451005 - 40450959
Alignment:
Q  347 agttaacatgcgtaggggtattttgaacttttactttgggaatgagc 393  Q
    |||||||||||||||||| |||||  |||||||||||||||||||||    
T  40451005 agttaacatgcgtaggggcattttcgacttttactttgggaatgagc 40450959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 348 - 421
Target Start/End: Original strand, 33164510 - 33164583
Alignment:
Q  348 gttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattc 421  Q
    ||||||||||||||||| |||||| || ||||||||| ||||||||  |||| |||| |||| ||| |||||||    
T  33164510 gttaacatgcgtaggggcattttggacatttactttgagaatgagcggaaccatttgggtaatgagcagaattc 33164583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 348 - 392
Target Start/End: Complemental strand, 36172238 - 36172194
Alignment:
Q  348 gttaacatgcgtaggggtattttgaacttttactttgggaatgag 392  Q
    |||||||| | ||||||||||||| ||||||||||||||||||||    
T  36172238 gttaacatacataggggtattttggacttttactttgggaatgag 36172194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 393
Target Start/End: Complemental strand, 24972464 - 24972418
Alignment:
Q  347 agttaacatgcgtaggggtattttgaacttttactttgggaatgagc 393  Q
    ||||||||||||||||||| ||||  ||||||||||| |||||||||    
T  24972464 agttaacatgcgtaggggtgtttttgacttttactttaggaatgagc 24972418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 409
Target Start/End: Original strand, 27992304 - 27992370
Alignment:
Q  343 cgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaa 409  Q
    ||||||||||||||| ||||||||||||| || |||| ||| | |||||||||| || |||| ||||    
T  27992304 cgtgagttaacatgcataggggtattttggacatttattttagaaatgagcaaatccatttgggtaa 27992370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 423
Target Start/End: Complemental strand, 37576607 - 37576541
Alignment:
Q  357 cgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattctt 423  Q
    |||||||||| | || || |||||||||| || ||||||||||||||| |||| ||| |||||||||    
T  37576607 cgtaggggtaatatggacatttactttggaaacgagcaaaaccgtttgggtaatgagcagaattctt 37576541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 424
Target Start/End: Complemental strand, 47177975 - 47177909
Alignment:
Q  358 gtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattctta 424  Q
    ||||||||||||||    ||||||||||||| |||| |||||||||| || ||||| ||||||||||    
T  47177975 gtaggggtattttggtaatttactttgggaacgagcgaaaccgtttgggtcaagagcagaattctta 47177909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 396
Target Start/End: Complemental strand, 27992193 - 27992140
Alignment:
Q  343 cgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaa 396  Q
    ||||||||||||||| |||||| |||| |  | |||||||||||||||||||||    
T  27992193 cgtgagttaacatgcttaggggcatttcggtcatttactttgggaatgagcaaa 27992140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 409
Target Start/End: Original strand, 36174584 - 36174645
Alignment:
Q  348 gttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaa 409  Q
    |||||||||||||| || |||||| | ||||||||||||||||||  ||||| |||| ||||    
T  36174584 gttaacatgcgtagtggcattttggatttttactttgggaatgagtgaaaccatttgagtaa 36174645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 393
Target Start/End: Original strand, 46817437 - 46817482
Alignment:
Q  348 gttaacatgcgtaggggtattttgaacttttactttgggaatgagc 393  Q
    ||||||||||||||||| ||||||||| ||||||||  ||||||||    
T  46817437 gttaacatgcgtaggggcattttgaacatttactttaagaatgagc 46817482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 396
Target Start/End: Original strand, 24974151 - 24974199
Alignment:
Q  348 gttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaa 396  Q
    ||||||||||||||||| |||| |  | |||||||||||||||||||||    
T  24974151 gttaacatgcgtaggggcatttcggtcatttactttgggaatgagcaaa 24974199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 404
Target Start/End: Complemental strand, 53265865 - 53265809
Alignment:
Q  348 gttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttg 404  Q
    ||||||||||||||| | |||||| | ||||||||| ||||||||| ||||| ||||    
T  53265865 gttaacatgcgtaggagcattttggaattttactttaggaatgagcgaaaccatttg 53265809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 342 - 421
Target Start/End: Complemental strand, 26009448 - 26009369
Alignment:
Q  342 acgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattc 421  Q
    |||||||||||||||||||||  |||||||  | |||||||||||||||||||||| |||||| |||||||| |||||||    
T  26009448 acgtgagttaacatgcgtaggaatattttggtcatttactttgggaatgagcaaaatcgtttgggtaaagagcagaattc 26009369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 418
Target Start/End: Original strand, 26604172 - 26604248
Alignment:
Q  342 acgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaa 418  Q
    |||| |||||||||||||||||| ||||| ||||||||||||| ||||||||  |||| |||| |||| ||| ||||    
T  26604172 acgtaagttaacatgcgtaggggcattttaaacttttactttgagaatgagcggaaccatttgagtaatgagcagaa 26604248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 348 - 422
Target Start/End: Complemental strand, 38790958 - 38790883
Alignment:
Q  348 gttaacatgcgtaggggtattttgaacttttactttgg-gaatgagcaaaaccgtttgcgtaaagaggagaattct 422  Q
    |||||||||||||||||||||||| |||||||||||||  ||||||| ||||| ||||  ||| ||| ||||||||    
T  38790958 gttaacatgcgtaggggtattttggacttttactttggaaaatgagcgaaaccatttggataatgagcagaattct 38790883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 424
Target Start/End: Original strand, 26011952 - 26012034
Alignment:
Q  342 acgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattctta 424  Q
    |||| ||||||||||| ||| |||||||||  | ||||||||| ||||||  |||| |||||| |||||||| ||||||||||    
T  26011952 acgtaagttaacatgcatagaggtattttggtcatttactttgagaatgattaaaatcgtttgggtaaagagcagaattctta 26012034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 360 - 422
Target Start/End: Complemental strand, 28138820 - 28138758
Alignment:
Q  360 aggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattct 422  Q
    ||||||||||||  | |||||||||||||||||||||| | |||| |||||||| ||||||||    
T  28138820 aggggtattttggtcatttactttgggaatgagcaaaatcatttgggtaaagagcagaattct 28138758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 424
Target Start/End: Complemental strand, 42548216 - 42548158
Alignment:
Q  366 attttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattctta 424  Q
    |||||| ||||||||||||||||||||||||||  |||| |||| ||| ||||||||||    
T  42548216 attttggacttttactttgggaatgagcaaaacgatttgggtaatgagcagaattctta 42548158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 376 - 425
Target Start/End: Complemental strand, 25428776 - 25428727
Alignment:
Q  376 tttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattcttat 425  Q
    ||||||||||||||||||| ||||||||| |||||||| | |||||||||    
T  25428776 tttactttgggaatgagcagaaccgtttgggtaaagagcaaaattcttat 25428727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 391
Target Start/End: Original strand, 48221703 - 48221746
Alignment:
Q  348 gttaacatgcgtaggggtattttgaacttttactttgggaatga 391  Q
    |||| ||||||||||||||||||| || ||||||||||||||||    
T  48221703 gttagcatgcgtaggggtattttggacatttactttgggaatga 48221746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 393
Target Start/End: Original strand, 20379680 - 20379718
Alignment:
Q  355 tgcgtaggggtattttgaacttttactttgggaatgagc 393  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  20379680 tgcgtaggggcattttggacttttactttgggaatgagc 20379718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 421
Target Start/End: Original strand, 1537251 - 1537324
Alignment:
Q  348 gttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattc 421  Q
    ||||||||||| ||||| ||||||||| ||||||||| |||||| | | || ||||| |||| ||| |||||||    
T  1537251 gttaacatgcgcaggggcattttgaacatttactttgagaatgaacgatactgtttgggtaatgagcagaattc 1537324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 343 - 425
Target Start/End: Original strand, 37260913 - 37260995
Alignment:
Q  343 cgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattcttat 425  Q
    ||||||||||||||| |||||| |||||| || ||||||||| ||||| ||||||||||||| |||||||| | |||||||||    
T  37260913 cgtgagttaacatgcataggggcattttggacatttactttgagaatgggcaaaaccgtttgggtaaagagcataattcttat 37260995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 344 - 413
Target Start/End: Original strand, 35392105 - 35392174
Alignment:
Q  344 gtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagag 413  Q
    ||||||||||||||||||  ||||||||||| |||||||||||||||||||||||  |||| ||||||||    
T  35392105 gtgagttaacatgcgtagaagtattttgaacatttactttgggaatgagcaaaacaatttgggtaaagag 35392174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 348 - 404
Target Start/End: Complemental strand, 45688381 - 45688325
Alignment:
Q  348 gttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttg 404  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||    
T  45688381 gttaacatgcgtaggggcattttgaacttttactttgggaatgagcagaaccatttg 45688325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 347 - 393
Target Start/End: Complemental strand, 28442996 - 28442950
Alignment:
Q  347 agttaacatgcgtaggggtattttgaacttttactttgggaatgagc 393  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||    
T  28442996 agttaacatgcgtaggggcattttcaacttttactttgggaatgagc 28442950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 340 - 421
Target Start/End: Original strand, 5119028 - 5119109
Alignment:
Q  340 taacgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattc 421  Q
    ||||||||||||| ||| ||||  |||||||  || |||||||| ||||||||||||||||||||  ||||||| |||||||    
T  5119028 taacgtgagttaatatgtgtagcagtattttagacatttactttaggaatgagcaaaaccgtttggataaagagcagaattc 5119109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 348 - 409
Target Start/End: Original strand, 45691053 - 45691114
Alignment:
Q  348 gttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaa 409  Q
    ||||||||| ||||||| |||||| ||||||||||||||||||||| ||||| |||| ||||    
T  45691053 gttaacatgtgtaggggcattttggacttttactttgggaatgagcgaaaccatttgagtaa 45691114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 349 - 409
Target Start/End: Original strand, 45691196 - 45691256
Alignment:
Q  349 ttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaa 409  Q
    |||||||| ||||||| |||||| ||||||||||||||||||||| ||||| |||| ||||    
T  45691196 ttaacatgtgtaggggcattttggacttttactttgggaatgagcgaaaccatttgagtaa 45691256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 349 - 409
Target Start/End: Original strand, 45691338 - 45691398
Alignment:
Q  349 ttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaa 409  Q
    |||||||| ||||||| |||||| ||||||||||||||||||||| ||||| |||| ||||    
T  45691338 ttaacatgtgtaggggcattttggacttttactttgggaatgagcgaaaccatttgagtaa 45691398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 340 - 391
Target Start/End: Complemental strand, 35391556 - 35391505
Alignment:
Q  340 taacgtgagttaacatgcgtaggggtattttgaacttttactttgggaatga 391  Q
    ||||||||||||||||||||| | |||||||| || ||||||||||||||||    
T  35391556 taacgtgagttaacatgcgtatgagtattttggacatttactttgggaatga 35391505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 348 - 421
Target Start/End: Complemental strand, 3792633 - 3792560
Alignment:
Q  348 gttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattc 421  Q
    ||||||||||||| ||| |||||| ||||||||||||| ||||||| ||||  |||| |||| ||| |||||||    
T  3792633 gttaacatgcgtaagggcattttggacttttactttggaaatgagcgaaactatttgggtaatgagcagaattc 3792560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 348 - 421
Target Start/End: Complemental strand, 39650269 - 39650196
Alignment:
Q  348 gttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattc 421  Q
    ||||||||||||||||| |||||| || |||||||| ||||||||| ||||| |||  |||| ||| |||||||    
T  39650269 gttaacatgcgtaggggcattttggacatttactttaggaatgagcgaaaccatttaggtaatgagcagaattc 39650196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 343 - 394
Target Start/End: Complemental strand, 2093889 - 2093837
Alignment:
Q  343 cgtgagttaacatgcgtaggggtattttgaacttttactttggg-aatgagca 394  Q
    ||||||||||||||||||||||||||||| || |||| |||||| ||||||||    
T  2093889 cgtgagttaacatgcgtaggggtattttggacatttattttgggtaatgagca 2093837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 347 - 423
Target Start/End: Original strand, 33403130 - 33403206
Alignment:
Q  347 agttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattctt 423  Q
    |||||||||||||||||| |||||  ||||||||||||| ||||||| | || ||||| |||| ||| | |||||||    
T  33403130 agttaacatgcgtaggggcattttcgacttttactttggaaatgagcgatactgtttgggtaatgagcataattctt 33403206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 421
Target Start/End: Complemental strand, 11821239 - 11821160
Alignment:
Q  342 acgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattc 421  Q
    |||| ||||||||||| |||| | |||||| ||||||||||||||||||| | ||||| ||||  ||| ||| |||||||    
T  11821239 acgtaagttaacatgcataggagcattttggacttttactttgggaatgaacgaaaccatttggataatgagcagaattc 11821160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 422
Target Start/End: Complemental strand, 48025630 - 48025555
Alignment:
Q  347 agttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattct 422  Q
    |||||||||||||| ||| ||||| ||||| |||||||||||||||| | || ||||| |||| ||| | ||||||    
T  48025630 agttaacatgcgtaagggcattttcaacttctactttgggaatgagcgatactgtttgggtaacgagcataattct 48025555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 421
Target Start/End: Complemental strand, 5602989 - 5602944
Alignment:
Q  376 tttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattc 421  Q
    ||||||||||||||||||||| || |||| |||||||| |||||||    
T  5602989 tttactttgggaatgagcaaatccatttgggtaaagagcagaattc 5602944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 423
Target Start/End: Complemental strand, 42883159 - 42883106
Alignment:
Q  370 tgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattctt 423  Q
    ||||| |||||||| || ||||||||||| ||||| |||||||| |||||||||    
T  42883159 tgaacatttactttaggtatgagcaaaactgtttgggtaaagagcagaattctt 42883106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 393
Target Start/End: Original strand, 50069239 - 50069284
Alignment:
Q  348 gttaacatgcgtaggggtattttgaacttttactttgggaatgagc 393  Q
    ||||||||||| ||||| |||||| || ||||||||||||||||||    
T  50069239 gttaacatgcgcaggggcattttggacatttactttgggaatgagc 50069284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 399
Target Start/End: Original strand, 42883754 - 42883810
Alignment:
Q  343 cgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaacc 399  Q
    |||||||||||||| |||||| ||||||| || |||| ||| | |||||||||||||    
T  42883754 cgtgagttaacatgtgtagggatattttggacatttattttagaaatgagcaaaacc 42883810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 347 - 432
Target Start/End: Original strand, 24369 - 24454
Alignment:
Q  347 agttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattcttattttattt 432  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||| | || ||||| |||| ||| ||||||||| | ||||||    
T  24369 agttaacatgcgtaggggcattttaaacttttactttgggaatgagcgatactgtttgagtaatgagcagaattcttttattattt 24454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 348 - 421
Target Start/End: Original strand, 33220792 - 33220865
Alignment:
Q  348 gttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattc 421  Q
    ||||||||||||||||| |||||||||||||||||||||||||||  ||||| |||| |||| ||| |||||||    
T  33220792 gttaacatgcgtaggggcattttgaacttttactttgggaatgagtgaaaccatttgggtaatgagcagaattc 33220865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 343 - 422
Target Start/End: Original strand, 24899066 - 24899145
Alignment:
Q  343 cgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattct 422  Q
    |||||||||||||||||||| ||||||||  | |||||| ||||||||| |||||  ||||| |||||||| ||||||||    
T  24899066 cgtgagttaacatgcgtaggagtattttggtcatttactctgggaatgaacaaaagtgtttgggtaaagagtagaattct 24899145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 348 - 428
Target Start/End: Original strand, 5967242 - 5967322
Alignment:
Q  348 gttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattcttatttt 428  Q
    ||||||||||||||||| |||| || | |||||||||||||||||| || || |||| |||| ||| |||||||| |||||    
T  5967242 gttaacatgcgtaggggcatttcgatcatttactttgggaatgagcgaatccatttgggtaatgagcagaattctaatttt 5967322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 344 - 423
Target Start/End: Original strand, 1349220 - 1349299
Alignment:
Q  344 gtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattctt 423  Q
    ||||||||||||||||| ||||||||||  | |||  || |||||||||||||| | |||| |||||||| |||||||||    
T  1349220 gtgagttaacatgcgtaagggtattttggtcatttcattcgggaatgagcaaaaacttttgggtaaagagcagaattctt 1349299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 421
Target Start/End: Original strand, 43640977 - 43641051
Alignment:
Q  347 agttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattc 421  Q
    |||||||||||||||||| | ||||| | |||||||||| ||||||| ||||| |||| |||| ||| |||||||    
T  43640977 agttaacatgcgtaggggcaatttgatcatttactttggaaatgagccaaaccatttgggtaatgagcagaattc 43641051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 349 - 421
Target Start/End: Original strand, 14087850 - 14087922
Alignment:
Q  349 ttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattc 421  Q
    |||| ||||||||||| ||||  ||| |||| |||| ||||||| ||||||||||| |||||||| |||||||    
T  14087850 ttaatatgcgtaggggcatttcaaacatttattttgagaatgagtaaaaccgtttgagtaaagagcagaattc 14087922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 422
Target Start/End: Original strand, 23558982 - 23559062
Alignment:
Q  342 acgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattct 422  Q
    |||| |||||||||||||||||| |||||| |||||||| |||| |||||||  |||| ||||  ||| ||| ||||||||    
T  23558982 acgtaagttaacatgcgtaggggcattttggacttttaccttggcaatgagcggaaccatttggataatgagcagaattct 23559062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 373 - 421
Target Start/End: Original strand, 26229068 - 26229116
Alignment:
Q  373 acttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattc 421  Q
    ||||||||||||||||||| |||||| ||||| |||||||| |||||||    
T  26229068 acttttactttgggaatgaacaaaacagtttgggtaaagagcagaattc 26229116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 424
Target Start/End: Complemental strand, 37686664 - 37686613
Alignment:
Q  373 acttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattctta 424  Q
    ||||||||||||||||||| | ||||  |||| |||||||||||||||||||    
T  37686664 acttttactttgggaatgaacgaaacgatttgggtaaagaggagaattctta 37686613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 422
Target Start/End: Complemental strand, 35841469 - 35841396
Alignment:
Q  349 ttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattct 422  Q
    ||||||||||||||| ||||||| || ||||||||   |||||||| ||| ||||  |||||||| ||||||||    
T  35841469 ttaacatgcgtagggatattttggacatttactttaaaaatgagcacaactgttttggtaaagagcagaattct 35841396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 347 - 432
Target Start/End: Complemental strand, 19866807 - 19866722
Alignment:
Q  347 agttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattcttattttattt 432  Q
    |||||||||||||||||| |||||  ||||||||||||||||||||| | || ||||| |||| ||| ||||||||||| ||||||    
T  19866807 agttaacatgcgtaggggcatttttgacttttactttgggaatgagcgatactgtttgggtaatgagcagaattcttatcttattt 19866722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 348 - 421
Target Start/End: Original strand, 6162687 - 6162760
Alignment:
Q  348 gttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattc 421  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||  |||| |||| |||| ||| |||||||    
T  6162687 gttaacatgcgtaggggcattttggacttttactttgggaatgagcggaaccatttgggtaatgagcagaattc 6162760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 345 - 421
Target Start/End: Original strand, 30533880 - 30533956
Alignment:
Q  345 tgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattc 421  Q
    |||||||||||| |||||||||||||| |  |||||||||  |||||||||||||||| | |||||||| |||||||    
T  30533880 tgagttaacatgtgtaggggtattttggatatttactttgaaaatgagcaaaaccgttcgagtaaagagcagaattc 30533956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 343 - 421
Target Start/End: Original strand, 54528956 - 54529034
Alignment:
Q  343 cgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattc 421  Q
    |||||||||||||| |||||||||||||| || ||||| ||| |||||||||||| | |||  |||||||| |||||||    
T  54528956 cgtgagttaacatgtgtaggggtattttggacatttacattgagaatgagcaaaatcattttggtaaagagcagaattc 54529034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 341 - 398
Target Start/End: Original strand, 2652934 - 2652991
Alignment:
Q  341 aacgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaac 398  Q
    ||||||| |||||||||||||||||||||||| | ||||||||||||||  |||||||    
T  2652934 aacgtgaattaacatgcgtaggggtattttgatcatttactttgggaataggcaaaac 2652991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 349 - 422
Target Start/End: Original strand, 53814567 - 53814640
Alignment:
Q  349 ttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattct 422  Q
    |||||||||||||||| ||||||| | |||||||||||||||||| || || |||| |||| ||| ||||||||    
T  53814567 ttaacatgcgtaggggcattttgatcatttactttgggaatgagcgaatccatttgggtaatgagcagaattct 53814640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 413
Target Start/End: Complemental strand, 3539748 - 3539676
Alignment:
Q  341 aacgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagag 413  Q
    |||||||||||||||| |||||| |||||||| | |||| ||||| ||||||||||||| ||||  |||||||    
T  3539748 aacgtgagttaacatgtgtagggctattttgatcatttattttggaaatgagcaaaaccatttggataaagag 3539676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 394
Target Start/End: Complemental strand, 47064943 - 47064891
Alignment:
Q  342 acgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagca 394  Q
    |||| |||||||||||||||| | |||||| ||||||||||||||||||||||    
T  47064943 acgtaagttaacatgcgtaggagcattttggacttttactttgggaatgagca 47064891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 422
Target Start/End: Complemental strand, 50663954 - 50663874
Alignment:
Q  342 acgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattct 422  Q
    ||||||||||||||||||||||| ||||||    |||||||||||||||||| ||| | |||| || ||||| ||||||||    
T  50663954 acgtgagttaacatgcgtaggggcattttggttatttactttgggaatgagcgaaatcatttgggtgaagagcagaattct 50663874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 345 - 412
Target Start/End: Complemental strand, 8150245 - 8150178
Alignment:
Q  345 tgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaaga 412  Q
    ||||||||||| |||||||||||||||  |  || |||||||||||||||||| |||||| |||||||    
T  8150245 tgagttaacatacgtaggggtattttggtcagtttctttgggaatgagcaaaaacgtttgggtaaaga 8150178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 354 - 421
Target Start/End: Original strand, 40517534 - 40517601
Alignment:
Q  354 atgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattc 421  Q
    |||||||||||||| |||  | |||||||| ||||||||| |||||||||| |||||||| |||||||    
T  40517534 atgcgtaggggtatcttggtcatttactttaggaatgagcgaaaccgtttgggtaaagagcagaattc 40517601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 427
Target Start/End: Complemental strand, 4969939 - 4969869
Alignment:
Q  357 cgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattcttattt 427  Q
    ||||||||||||||  |||||||||||||||||||||  |||| |||| |||| ||| |||||||| ||||    
T  4969939 cgtaggggtattttcgacttttactttgggaatgagcggaaccatttgggtaatgagcagaattctaattt 4969869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 393
Target Start/End: Original strand, 15042010 - 15042056
Alignment:
Q  347 agttaacatgcgtaggggtattttgaacttttactttgggaatgagc 393  Q
    |||||||||||||||||| |||||  |||||||||||||||||||||    
T  15042010 agttaacatgcgtaggggcattttcgacttttactttgggaatgagc 15042056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 393
Target Start/End: Original strand, 34086844 - 34086890
Alignment:
Q  347 agttaacatgcgtaggggtattttgaacttttactttgggaatgagc 393  Q
    |||||||||||||||||| |||||  |||||||||||||||||||||    
T  34086844 agttaacatgcgtaggggcattttcgacttttactttgggaatgagc 34086890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 348 - 421
Target Start/End: Complemental strand, 35995210 - 35995137
Alignment:
Q  348 gttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattc 421  Q
    ||||||||||| ||||| ||||| ||||||||||||| ||| ||||| |||| |||| |||| ||| |||||||    
T  35995210 gttaacatgcgaaggggcattttaaacttttactttgcgaaggagcagaaccatttgggtaatgagtagaattc 35995137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 347 - 424
Target Start/End: Original strand, 39688756 - 39688833
Alignment:
Q  347 agttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattctta 424  Q
    |||||||||| |||||||||||||  |||||||||||| |||||||||| || ||||  ||||  || ||||||||||    
T  39688756 agttaacatgtgtaggggtattttcgacttttactttgagaatgagcaatactgtttaagtaatcagcagaattctta 39688833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 348 - 393
Target Start/End: Original strand, 53827666 - 53827711
Alignment:
Q  348 gttaacatgcgtaggggtattttgaacttttactttgggaatgagc 393  Q
    ||||||||||||||||| |||||| || ||||||||||||||||||    
T  53827666 gttaacatgcgtaggggcattttggacatttactttgggaatgagc 53827711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 309
Target Start/End: Complemental strand, 54528408 - 54528376
Alignment:
Q  277 tggaatatggatgaaacaaaaccagcgtgagtt 309  Q
    |||||||||||||||||||||||||||||||||    
T  54528408 tggaatatggatgaaacaaaaccagcgtgagtt 54528376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 422
Target Start/End: Original strand, 7666966 - 7667041
Alignment:
Q  347 agttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattct 422  Q
    |||||||||||||||||| |||||  ||||||| ||||||||||||| | || ||||| |||| ||| | ||||||    
T  7666966 agttaacatgcgtaggggcatttttgacttttattttgggaatgagcgatactgtttgggtaatgagcaaaattct 7667041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 427
Target Start/End: Complemental strand, 44833543 - 44833464
Alignment:
Q  348 gttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattcttattt 427  Q
    ||||| ||||||||||| |||||| ||||||||||||| ||| | |  |||| |||| |||| ||| |||||||||||||    
T  44833543 gttaatatgcgtaggggcattttggacttttactttggaaataaacggaaccatttgggtaatgagcagaattcttattt 44833464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 390
Target Start/End: Original strand, 2325566 - 2325608
Alignment:
Q  348 gttaacatgcgtaggggtattttgaacttttactttgggaatg 390  Q
    ||||||||||||||||  ||||| |||||||||||||||||||    
T  2325566 gttaacatgcgtagggacattttaaacttttactttgggaatg 2325608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 391
Target Start/End: Complemental strand, 11342962 - 11342920
Alignment:
Q  349 ttaacatgcgtaggggtattttgaacttttactttgggaatga 391  Q
    ||||||||||||||||  ||||| |||||||||||||||||||    
T  11342962 ttaacatgcgtaggggctttttggacttttactttgggaatga 11342920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 428
Target Start/End: Complemental strand, 15040754 - 15040674
Alignment:
Q  348 gttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattcttatttt 428  Q
    ||||||||||||||||| ||||    | |||||||||||||||||| || || |||| |||| ||| ||||||||| ||||    
T  15040754 gttaacatgcgtaggggcatttcagtcatttactttgggaatgagcgaatccatttgggtaatgagcagaattcttttttt 15040674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 423
Target Start/End: Original strand, 26998287 - 26998367
Alignment:
Q  343 cgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattctt 423  Q
    |||||||||||||| |||||| |||||||| | |||| ||| | ||||||| ||||| ||||  | ||||| |||||||||    
T  26998287 cgtgagttaacatgtgtagggatattttgatcatttattttagaaatgagcgaaaccatttggatgaagagcagaattctt 26998367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 392
Target Start/End: Complemental strand, 42947448 - 42947404
Alignment:
Q  348 gttaacatgcgtaggggtattttgaacttttactttgggaatgag 392  Q
    ||||||||||||||| | |||||| |||||||||||| |||||||    
T  42947448 gttaacatgcgtaggagcattttggacttttactttgagaatgag 42947404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 422
Target Start/End: Complemental strand, 44430465 - 44430417
Alignment:
Q  374 cttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattct 422  Q
    |||||||||||||||||||||||||| ||||  ||| ||| ||||||||    
T  44430465 cttttactttgggaatgagcaaaaccatttggataatgagcagaattct 44430417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 421
Target Start/End: Original strand, 53101163 - 53101235
Alignment:
Q  349 ttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattc 421  Q
    |||||||||||| ||||| |||   | |||||||||| |||||||||||  ||||| |||||||| |||||||    
T  53101163 ttaacatgcgtaagggtaatttcgtcatttactttggaaatgagcaaaaatgtttgggtaaagagtagaattc 53101235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 343 - 423
Target Start/End: Complemental strand, 806623 - 806543
Alignment:
Q  343 cgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattctt 423  Q
    ||||||||||||| |||||| |||||||  || ||||||||| ||||||||||||| ||||| |||||||| |||||||||    
T  806623 cgtgagttaacatacgtaggagtattttagacatttactttgagaatgagcaaaactgtttgggtaaagagcagaattctt 806543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 389 - 433
Target Start/End: Original strand, 18085647 - 18085691
Alignment:
Q  389 tgagcaaaaccgtttgcgtaaagaggagaattcttattttatttg 433  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  18085647 tgagcaaaaccgtttgcgtaaagaggagaattcttattttatttg 18085691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 343 - 422
Target Start/End: Original strand, 14431474 - 14431553
Alignment:
Q  343 cgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattct 422  Q
    |||||||||||||  |||||| | |||||||| |||||||| ||||||| |||||||||||| |||||||| ||||||||    
T  14431474 cgtgagttaacatatgtagggatgttttgaacatttactttaggaatgaacaaaaccgtttgtgtaaagagtagaattct 14431553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 348 - 422
Target Start/End: Complemental strand, 14153427 - 14153353
Alignment:
Q  348 gttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattct 422  Q
    ||||||||||||||||||||||||  | |||||||||||||||||||||| | |||| |||| ||| ||||||||    
T  14153427 gttaacatgcgtaggggtattttggtcatttactttgggaatgagcaaaatcatttgggtaatgagcagaattct 14153353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 7203953 - 7204005
Alignment:
Q  345 tgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaa 397  Q
    |||||||||||||||||||||||||||| | ||||||||||||| ||||||||    
T  7203953 tgagttaacatgcgtaggggtattttgatcatttactttgggaacgagcaaaa 7204005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 343 - 422
Target Start/End: Complemental strand, 14431022 - 14430943
Alignment:
Q  343 cgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattct 422  Q
    |||||||||||||||||||||  ||||| ||| |||||||| | |||||||| ||||||||  ||||| || ||||||||    
T  14431022 cgtgagttaacatgcgtagggacattttaaacatttactttagaaatgagcagaaccgtttaggtaaatagcagaattct 14430943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 423
Target Start/End: Original strand, 2559616 - 2559699
Alignment:
Q  340 taacgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattctt 423  Q
    ||||||||||||||   |||||| | | | ||||| ||||||||||||| |||||||| |||||| |||||||| | |||||||    
T  2559616 taacgtgagttaactcacgtaggagcaatatgaacatttactttgggaacgagcaaaatcgtttgggtaaagagcaaaattctt 2559699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 393
Target Start/End: Complemental strand, 17436110 - 17436064
Alignment:
Q  347 agttaacatgcgtaggggtattttgaacttttactttgggaatgagc 393  Q
    ||||||||||||||| || |||||  |||||||||||||||||||||    
T  17436110 agttaacatgcgtagaggcattttagacttttactttgggaatgagc 17436064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 391
Target Start/End: Complemental strand, 23608503 - 23608457
Alignment:
Q  345 tgagttaacatgcgtaggggtattttgaacttttactttgggaatga 391  Q
    ||||||||||||||||||| ||||||  ||||||| |||||||||||    
T  23608503 tgagttaacatgcgtagggatattttagacttttattttgggaatga 23608457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 393
Target Start/End: Complemental strand, 32274257 - 32274212
Alignment:
Q  348 gttaacatgcgtaggggtattttgaacttttactttgggaatgagc 393  Q
    ||||||||||||||||| |||| || | ||||||||||||||||||    
T  32274257 gttaacatgcgtaggggcatttcgatcatttactttgggaatgagc 32274212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 393
Target Start/End: Original strand, 35060900 - 35060945
Alignment:
Q  348 gttaacatgcgtaggggtattttgaacttttactttgggaatgagc 393  Q
    ||||||||||||||||| |||||| || |||||||||| |||||||    
T  35060900 gttaacatgcgtaggggcattttggacatttactttggaaatgagc 35060945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 319
Target Start/End: Complemental strand, 23608587 - 23608555
Alignment:
Q  287 atgaaacaaaaccagcgtgagttgggttttagt 319  Q
    |||||||||||||||||||||||| ||||||||    
T  23608587 atgaaacaaaaccagcgtgagttgagttttagt 23608555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 409
Target Start/End: Original strand, 23608981 - 23609045
Alignment:
Q  345 tgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaa 409  Q
    |||||||||||||  ||| |||||||||||||||| ||| |||||||| | |||| |||| ||||    
T  23608981 tgagttaacatgcagaggagtattttgaacttttattttaggaatgagaagaaccatttgagtaa 23609045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 393
Target Start/End: Complemental strand, 25400897 - 25400861
Alignment:
Q  357 cgtaggggtattttgaacttttactttgggaatgagc 393  Q
    |||||||||||||||||| |||||||||| |||||||    
T  25400897 cgtaggggtattttgaacatttactttggaaatgagc 25400861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 342 - 409
Target Start/End: Original strand, 37893007 - 37893074
Alignment:
Q  342 acgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaa 409  Q
    |||| ||||||||||| |||||| |||||| ||||||||||||||||||||| ||||| |||| ||||    
T  37893007 acgtaagttaacatgcataggggcattttggacttttactttgggaatgagcgaaaccatttgggtaa 37893074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 334 - 425
Target Start/End: Complemental strand, 2675233 - 2675142
Alignment:
Q  334 gaaagttaacgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattcttat 425  Q
    ||||| || |||||||||||||| |||||| |||||||| | ||||||||| ||| || ||||||  ||||  ||||||| |||||||||||    
T  2675233 gaaagctagcgtgagttaacatgggtagggctattttgatcatttactttgagaacgaacaaaactatttgaataaagagcagaattcttat 2675142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 348 - 399
Target Start/End: Complemental strand, 11713031 - 11712980
Alignment:
Q  348 gttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaacc 399  Q
    |||||||| |||||||| |||||| ||||||||||||||||||||| |||||    
T  11713031 gttaacatacgtaggggcattttggacttttactttgggaatgagcgaaacc 11712980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 348 - 424
Target Start/End: Complemental strand, 12967344 - 12967267
Alignment:
Q  348 gttaacatgcgtaggggtattttgaac-ttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattctta 424  Q
    |||||||||||||||||||||||| || |||||||||| ||||||||  |||| |||  |||| ||| ||||||||||    
T  12967344 gttaacatgcgtaggggtattttggactttttactttgagaatgagcggaaccatttaggtaatgagcagaattctta 12967267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 348 - 385
Target Start/End: Original strand, 12969269 - 12969306
Alignment:
Q  348 gttaacatgcgtaggggtattttgaacttttactttgg 385  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  12969269 gttaacatgcgtaggggcattttgaacttttactttgg 12969306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 357 - 421
Target Start/End: Original strand, 22787999 - 22788063
Alignment:
Q  357 cgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattc 421  Q
    |||||||||||||||  | |||||||||||||||| |||| || |||| |||||||| |||||||    
T  22787999 cgtaggggtattttggtcatttactttgggaatgaacaaatccatttgggtaaagagcagaattc 22788063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 393
Target Start/End: Complemental strand, 11573707 - 11573661
Alignment:
Q  347 agttaacatgcgtaggggtattttgaacttttactttgggaatgagc 393  Q
    ||||||||| |||||||| |||||  |||||||||||||||||||||    
T  11573707 agttaacatacgtaggggcatttttgacttttactttgggaatgagc 11573661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 421
Target Start/End: Complemental strand, 8273318 - 8273245
Alignment:
Q  348 gttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattc 421  Q
    ||||||||||||||||| |||| |  | |||||||||||||||||| || || |||| |||| ||| |||||||    
T  8273318 gttaacatgcgtaggggcatttcggtcatttactttgggaatgagcgaatccatttgggtaatgagcagaattc 8273245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 421
Target Start/End: Complemental strand, 18387314 - 18387241
Alignment:
Q  348 gttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattc 421  Q
    ||||||||||||| ||| |||||  |  ||||||||||||||||||| |||| |||| |||| ||| |||||||    
T  18387314 gttaacatgcgtaagggcatttttgatatttactttgggaatgagcagaaccatttgagtaatgagcagaattc 18387241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 426
Target Start/End: Complemental strand, 20685070 - 20685001
Alignment:
Q  357 cgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattcttatt 426  Q
    |||| |||||||||  |||||||||||| ||||||||  |||| |||| |||| ||| ||||||||||||    
T  20685070 cgtaagggtattttagacttttactttgagaatgagcggaaccatttgggtaatgagcagaattcttatt 20685001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 423
Target Start/End: Complemental strand, 12965127 - 12965047
Alignment:
Q  343 cgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattctt 423  Q
    |||||||||||   |||||| | ||||||| | |||||||||  |||||||| || |||||| |||||||| |||||||||    
T  12965127 cgtgagttaactcacgtaggagcattttgatcatttactttgaaaatgagcagaaacgtttgggtaaagagcagaattctt 12965047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 343 - 421
Target Start/End: Complemental strand, 8462 - 8384
Alignment:
Q  343 cgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattc 421  Q
    |||||||||||||||||| |||||||||  || |||||||| | |||||||| || |||||| |||||||| |||||||    
T  8462 cgtgagttaacatgcgtaagggtattttacacatttactttagaaatgagcagaaacgtttgggtaaagagcagaattc 8384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 17644600 - 17644650
Alignment:
Q  343 cgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagc 393  Q
    ||||| ||||||||||||||||||||||| || ||||||||||||||||||    
T  17644600 cgtgaattaacatgcgtaggggtattttggacatttactttgggaatgagc 17644650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 404
Target Start/End: Complemental strand, 1145219 - 1145158
Alignment:
Q  343 cgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttg 404  Q
    ||||||||||||||||||| || ||||||  | |||||||||||||||||| |||| |||||    
T  1145219 cgtgagttaacatgcgtagaggcattttggtcatttactttgggaatgagcgaaactgtttg 1145158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 404
Target Start/End: Complemental strand, 7335611 - 7335550
Alignment:
Q  343 cgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttg 404  Q
    ||||||||||||||  |||||||||||||  | |||| ||| ||||||||||||||||||||    
T  7335611 cgtgagttaacatgtataggggtattttggtcatttattttaggaatgagcaaaaccgtttg 7335550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 413
Target Start/End: Original strand, 16879875 - 16879943
Alignment:
Q  346 gagttaacatgcgta-ggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagag 413  Q
    ||||||||||||||| ||||||||||| |  |||||||| |||||| ||||||| ||||| ||||||||    
T  16879875 gagttaacatgcgtaaggggtattttggatatttactttaggaatgtgcaaaacagtttgggtaaagag 16879943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 421
Target Start/End: Complemental strand, 3758973 - 3758922
Alignment:
Q  370 tgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattc 421  Q
    ||||| ||||||||||||||||| ||||||||||  |||||||| |||||||    
T  3758973 tgaacatttactttgggaatgagtaaaaccgttttggtaaagagcagaattc 3758922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 422
Target Start/End: Complemental strand, 11135815 - 11135740
Alignment:
Q  347 agttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattct 422  Q
    |||||||||||||||||||||||||  | |||| ||||| ||||||| ||| | |||| |||||||| | ||||||    
T  11135815 agttaacatgcgtaggggtattttggtcatttattttggaaatgagcgaaatcatttgggtaaagagcataattct 11135740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 391
Target Start/End: Complemental strand, 30489796 - 30489753
Alignment:
Q  348 gttaacatgcgtaggggtattttgaacttttactttgggaatga 391  Q
    ||||||||||||||||| |||||  |||||||||||||||||||    
T  30489796 gttaacatgcgtaggggcattttcgacttttactttgggaatga 30489753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 393
Target Start/End: Original strand, 30491799 - 30491845
Alignment:
Q  347 agttaacatgcgtaggggtattttgaacttttactttgggaatgagc 393  Q
    |||||||||||||||||  |||||  |||||||||||||||||||||    
T  30491799 agttaacatgcgtagggacattttcgacttttactttgggaatgagc 30491845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 409
Target Start/End: Original strand, 19402004 - 19402065
Alignment:
Q  348 gttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaa 409  Q
    ||||||||||||| ||| |||||| |||||||||||| |||||||  ||||| |||| ||||    
T  19402004 gttaacatgcgtatgggcattttggacttttactttgagaatgagtgaaaccatttgggtaa 19402065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 424
Target Start/End: Complemental strand, 35843 - 35773
Alignment:
Q  354 atgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattctta 424  Q
    ||||||||||| |||||| || ||||||||| ||||||||||||  |||||  ||||||| ||||||||||    
T  35843 atgcgtaggggcattttggacatttactttgagaatgagcaaaattgtttggttaaagagcagaattctta 35773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1763 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold1763
Description:

Target: scaffold1763; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 342 - 423
Target Start/End: Original strand, 363 - 444
Alignment:
Q  342 acgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattctt 423  Q
    |||| ||||||||||| || ||| |||| | | ||||||||||||||||||| ||||| |||| |||||||| | |||||||    
T  363 acgtaagttaacatgcataagggcatttgggatttttactttgggaatgagcgaaaccatttgggtaaagagcataattctt 444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University