View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5221_high_1 (Length: 652)

Name: NF5221_high_1
Description: NF5221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5221_high_1
NF5221_high_1
[»] chr5 (11 HSPs)
chr5 (21-652)||(37704455-37705086)
chr5 (289-652)||(37698974-37699349)
chr5 (349-652)||(37437521-37437823)
chr5 (405-652)||(37698637-37698864)
chr5 (21-163)||(34599459-34599603)
chr5 (21-169)||(2143247-2143394)
chr5 (66-169)||(26325678-26325781)
chr5 (118-166)||(38458771-38458819)
chr5 (189-231)||(30384256-30384298)
chr5 (88-148)||(29531914-29531975)
chr5 (194-230)||(1630012-1630048)
[»] chr4 (7 HSPs)
chr4 (289-525)||(16840857-16841109)
chr4 (38-169)||(22519386-22519518)
chr4 (66-169)||(31095124-31095228)
chr4 (39-169)||(49291205-49291335)
chr4 (189-229)||(31095092-31095132)
chr4 (104-169)||(51580077-51580140)
chr4 (112-154)||(53769786-53769828)
[»] chr2 (6 HSPs)
chr2 (22-154)||(4558769-4558902)
chr2 (21-150)||(8198509-8198637)
chr2 (21-150)||(8203269-8203397)
chr2 (73-154)||(6739472-6739554)
chr2 (109-169)||(42054042-42054102)
chr2 (88-141)||(4923553-4923607)
[»] chr6 (14 HSPs)
chr6 (21-154)||(16419703-16419837)
chr6 (26-153)||(196111-196238)
chr6 (21-169)||(17411121-17411270)
chr6 (27-151)||(28477384-28477509)
chr6 (27-151)||(29789836-29789961)
chr6 (187-229)||(17411089-17411131)
chr6 (39-135)||(32548138-32548235)
chr6 (22-169)||(7004200-7004347)
chr6 (65-148)||(33547849-33547933)
chr6 (21-126)||(7202313-7202419)
chr6 (73-146)||(10544136-10544210)
chr6 (27-127)||(29693282-29693383)
chr6 (187-230)||(196244-196287)
chr6 (44-138)||(9405267-9405362)
[»] chr3 (5 HSPs)
chr3 (39-157)||(30534547-30534666)
chr3 (39-154)||(51265744-51265860)
chr3 (39-106)||(44291115-44291182)
chr3 (187-230)||(44291420-44291463)
chr3 (88-154)||(50898882-50898948)
[»] chr1 (8 HSPs)
chr1 (23-153)||(29954870-29955000)
chr1 (61-154)||(47726457-47726551)
chr1 (61-154)||(47747763-47747857)
chr1 (21-154)||(363718-363853)
chr1 (88-154)||(26706207-26706274)
chr1 (108-154)||(18470384-18470430)
chr1 (21-169)||(47600499-47600648)
chr1 (25-93)||(11016877-11016945)
[»] chr7 (9 HSPs)
chr7 (22-169)||(41331168-41331315)
chr7 (68-154)||(48447315-48447402)
chr7 (65-154)||(12264801-12264890)
chr7 (75-154)||(12422262-12422342)
chr7 (103-154)||(28002279-28002330)
chr7 (108-148)||(32857850-32857890)
chr7 (192-230)||(12422352-12422390)
chr7 (121-169)||(28002235-28002283)
chr7 (187-219)||(32857805-32857837)
[»] chr8 (7 HSPs)
chr8 (39-169)||(3806871-3807000)
chr8 (21-169)||(2510114-2510263)
chr8 (184-229)||(18080600-18080645)
chr8 (22-154)||(12189869-12190002)
chr8 (22-154)||(12434297-12434430)
chr8 (104-168)||(8453098-8453163)
chr8 (33-148)||(32566752-32566867)


Alignment Details
Target: chr5 (Bit Score: 568; Significance: 0; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 21 - 652
Target Start/End: Complemental strand, 37705086 - 37704455
Alignment:
Q  21 cgtaccaattaggtcctctaagctatttaactgtaagaaattgagggatttcagatcttaaaactgcaagttattcgggacctaaagttacaattaaata 120  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37705086 cgtaccaattaggtcctctaagctatttaactgtaacaaattgagggatttcagatcttaaaactgcaagttattcgggacctaaagttacaattaaata 37704987  T
Q  121 acttaaacgacctaagtgttatgaaaaatacttacataactaacttgttttttgagcaactacataactaacttgttataattaaataacttaaatgacg 220  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37704986 acttaaacgacctaagtgttacgaaaaatacttacataactaacttgttttttgagcaactacataactaacttgttataattaaataacttaaatgacg 37704887  T
Q  221 taagtgatacgnnnnnnnnnnnnnnnnccgatttgttataattaaataacttaaaagtatcgtaatttgctctttaaagtatgtacatttgaagaagtct 320  Q
     ||||||||||                ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  37704886 caagtgatacgaaaaaatcttaaaaaaccgatttgttataattaaataacttaaaagtctcgtaatttgctctttaaagtatgtacatttgaagaagtct 37704787  T
Q  321 aagtctccgattctaaatacaattaatgttattttcttcatttcaggtgtatttttaagcacattactcactgtgattgctacttaaatgaatttgttat 420  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37704786 aagtctccgattctaaatacaattaatgttattttcttcatttcaggtgtatttttaagcacattactcactgtgattgctacttaaatgaatttgttat 37704687  T
Q  421 cttatcacaacttgaaataagattccaactttcgtgctaattacgttcaaaaagtctggtcttcgaagatattatttagtttaatgaacaccaaactttt 520  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37704686 cttatcacaacttgaaataagattccaactttcgtgctaattacgttcaaaaagtctggtcttcgaagatattatttagtttaatgaacaccaaactttt 37704587  T
Q  521 ctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagactcaat 620  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37704586 ctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagactcaat 37704487  T
Q  621 ttgcaaacaatctaataagtcaacctttttgg 652  Q
    ||||||||||||||||||||||||||||||||    
T  37704486 ttgcaaacaatctaataagtcaacctttttgg 37704455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 289 - 652
Target Start/End: Complemental strand, 37699349 - 37698974
Alignment:
Q  289 gctctttaaagtatgtacatttgaagaagtctaagtctccgattctaaatacaattaatgtt------attttcttcatttcaggtgtatttttaagcac 382  Q
    |||||||||||| ||| || ||||||||||||||||||||| | ||||||||||||||||||      ||||||||||||| |||||||||||||||||     
T  37699349 gctctttaaagtctgttcagttgaagaagtctaagtctccgttgctaaatacaattaatgttgttattattttcttcattttaggtgtatttttaagcaa 37699250  T
Q  383 attactcactgtgattgctacttaaatgaatttgttatcttat---cacaacttgaaataagattccaactttcgtgctaattacgttcaaaaagtct-g 478  Q
    |||||||| | ||||||||||||||||||||||||||||||||   ||||||||| ||||||||||||||||| ||||||||||||||| |||||||| |    
T  37699249 attactcattctgattgctacttaaatgaatttgttatcttattatcacaacttgcaataagattccaactttagtgctaattacgttcgaaaagtcttg 37699150  T
Q  479 gtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatga 578  Q
    || ||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  37699149 gttttccaagatgttatttagtttaatgaacaccaaacttttctatgattgttactgaattaatattgttgccaaatgtcatatcagtatacggttatga 37699050  T
Q  579 aaagcacccccaaaacaaaataagggaatacgtagactcaa--tttgcaaacaatctaataagtcaacctttttgg 652  Q
    ||||||||||||| ||||||||||||||||| |||||||||  |||| |||||||||||||| |||| ||||||||    
T  37699049 aaagcacccccaacacaaaataagggaatacctagactcaatgtttgtaaacaatctaataactcaaactttttgg 37698974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 349 - 652
Target Start/End: Complemental strand, 37437823 - 37437521
Alignment:
Q  349 ttattttcttcatttcaggtgtatttttaagcacattactcactgtgattgctacttaaatgaatttgttatcttat---cacaacttgaaataagattc 445  Q
    ||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||   ||||||||| ||||||||||    
T  37437823 ttattttcttcatttcaggtgtatttttaagcaaattactcattctgattgctacttaaatgaatttgttatcttattatcacaacttgcaataagattc 37437724  T
Q  446 caactttcgtgctaattacgttcaaaaagtct-ggtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaattaatat 544  Q
    ||||||    ||||||||||||| |||||||| ||||||| || || |||||||||||||||||||||||||||||||||||| |||| |||||||||||    
T  37437723 caactt----gctaattacgttcgaaaagtcttggtcttccaatatgttatttagtttaatgaacaccaaacttttctatgattgttattgaattaatat 37437628  T
Q  545 tgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaac 644  Q
    ||||||||| |||||||||| |||| | |||||||||||| ||||| |  |||| |||||||||  |||||| |||||| ||||||||||||||||||      
T  37437627 tgttgccaattgtcatatcactatacggttatgaaaagca-ccccacattaaaacaagggaatagctagactgaatttgtaaacaatctaataagtcaga 37437529  T
Q  645 ctttttgg 652  Q
    ||||||||    
T  37437528 ctttttgg 37437521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 405 - 652
Target Start/End: Complemental strand, 37698864 - 37698637
Alignment:
Q  405 taaatgaatttgttatcttatcacaacttgaaataagattccaactttcgtgc----taattacgttcaaaaagtc-tggtcttcgaagatattatttag 499  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| ||||    |||||||||| |||||||| |||||||| ||||| ||||||||    
T  37698864 taaatgaatttgttatcttatcacaacttgcaataagattccaactttagtgctaattaattacgttaaaaaagtcttggtcttccaagatgttatttag 37698765  T
Q  500 tttaatgaacaccaaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaat 599  Q
    ||||| ||||||||||||||| |||||| |        |||||||||||||||| |||||||||| |||| | |                  ||||||||    
T  37698764 tttaacgaacaccaaacttttgtatgattg--------ttaatattgttgccaattgtcatatcactatacggt-----------------caacaaaat 37698690  T
Q  600 aagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttgg 652  Q
    |||||||||| ||||||||||||| ||||||||||||||||||| ||||||||    
T  37698689 aagggaatacttagactcaatttgtaaacaatctaataagtcaaactttttgg 37698637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 21 - 163
Target Start/End: Complemental strand, 34599603 - 34599459
Alignment:
Q  21 cgtaccaattaggtcctctaagctatttaactgtaagaaattgaggg-atttcagatcttaaaactgcaagttattcgggacctaaa-gttacaattaaa 118  Q
    ||||| ||||||||| | |||| |||||||| |||| || ||  ||| |||| ||||||||||| || ||||||||| ||||||||| ||||||||||||    
T  34599603 cgtactaattaggtcatttaagttatttaaccgtaacaatttttgggtattttagatcttaaaaatgtaagttattctggacctaaaagttacaattaaa 34599504  T
Q  119 taacttaaacgacctaagtgttatgaaaaatacttacataactaa 163  Q
     |||||||| ||| ||||  ||| |||||||||||| ||||||||    
T  34599503 caacttaaaggacttaagcattaagaaaaatacttaaataactaa 34599459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 21 - 169
Target Start/End: Original strand, 2143247 - 2143394
Alignment:
Q  21 cgtaccaattaggtcctctaagctatttaactgtaagaaattgagggatttcagatcttaaaactgcaagttattcgggacct-aaagttacaattaaat 119  Q
    ||||| ||||||||||| |||| |||||||||  || || ||  ||||||| | ||||||||  || |||||||||||| ||| |||||| |||||||||    
T  2143247 cgtactaattaggtcctttaagttatttaact--aacaatttaggggattttatatcttaaacatgtaagttattcggggcctcaaagtttcaattaaat 2143344  T
Q  120 aacttaaacgacctaagtgttatgaaaaatacttacataactaacttgtt 169  Q
    ||||||||  |||||| ||||| |||||||||| | |  |||||||||||    
T  2143345 aacttaaaaaacctaaatgttacgaaaaatactgaaaggactaacttgtt 2143394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 66 - 169
Target Start/End: Complemental strand, 26325781 - 26325678
Alignment:
Q  66 ggatttcagatcttaaaactgcaagttattcgggacctaaagttacaattaaataacttaaacgacctaagtgttatgaaaaatacttacataactaact 165  Q
    |||||||| || |||||| |  ||||||||| ||| ||||||||| |||||||||| ||||| ||  |||||||||  | ||||||||| || |||||||    
T  26325781 ggatttcaaatattaaaaatataagttattcaggatctaaagttataattaaataatttaaaggatttaagtgttacaataaatacttaaatgactaact 26325682  T
Q  166 tgtt 169  Q
    ||||    
T  26325681 tgtt 26325678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 118 - 166
Target Start/End: Original strand, 38458771 - 38458819
Alignment:
Q  118 ataacttaaacgacctaagtgttatgaaaaatacttacataactaactt 166  Q
    |||||||||| |||| ||||||||||||||||||||| || ||||||||    
T  38458771 ataacttaaaggacccaagtgttatgaaaaatacttaaatgactaactt 38458819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 189 - 231
Target Start/End: Complemental strand, 30384298 - 30384256
Alignment:
Q  189 taacttgttataattaaataacttaaatgacgtaagtgatacg 231  Q
    |||||||||| |||||||||||||||| ||||||||| |||||    
T  30384298 taacttgttacaattaaataacttaaaagacgtaagtaatacg 30384256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 148
Target Start/End: Complemental strand, 29531975 - 29531914
Alignment:
Q  88 aagttattcgggacctaaag-ttacaattaaataacttaaacgacctaagtgttatgaaaaa 148  Q
    |||||||||||||||||||  |||||||||||||||||||| ||| ||| || || ||||||    
T  29531975 aagttattcgggacctaaaaattacaattaaataacttaaatgacgtaaatgatacgaaaaa 29531914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 1630012 - 1630048
Alignment:
Q  194 tgttataattaaataacttaaatgacgtaagtgatac 230  Q
    |||||| ||||||||||||||| ||||||||||||||    
T  1630012 tgttatgattaaataacttaaaagacgtaagtgatac 1630048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 107; Significance: 3e-53; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 289 - 525
Target Start/End: Original strand, 16840857 - 16841109
Alignment:
Q  289 gctctttaaagtatgtacatttgaagaagtctaagtctccgattctaaatacaattaatgtt------attttcttcatttcaggtgtat----ttttaa 378  Q
    ||||||||||||||| | | |||| |||||||||||||||| ||||||||||| ||||||||      ||||||||||||||||||||||    ||||||    
T  16840857 gctctttaaagtatggatagttgacgaagtctaagtctccgcttctaaatacatttaatgttgttattattttcttcatttcaggtgtatatatttttaa 16840956  T
Q  379 gcacattactcactgtgattgctacttaaatgaatttgttatcttat------cacaacttgaaataagattccaactttcgtgctaattacgttcaaaa 472  Q
    ||| |||| ||| |||||||| |||||||||||||||||||||||||      ||||||||| ||||||||||||||||  |||||||||||||||||||    
T  16840957 gcaaattattcattgtgattggtacttaaatgaatttgttatcttattaatatcacaacttgcaataagattccaactta-gtgctaattacgttcaaaa 16841055  T
Q  473 agtct-ggtcttcgaagatattatttagtttaatgaacaccaaacttttctatg 525  Q
    ||||| ||||||| ||||| |||||||||||| | |||||||||||||| ||||    
T  16841056 agtcttggtcttccaagattttatttagtttattaaacaccaaacttttgtatg 16841109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 38 - 169
Target Start/End: Complemental strand, 22519518 - 22519386
Alignment:
Q  38 ctaagctatttaactgtaagaaattgagggatttcagatcttaaaactgcaagttattcgggacctaaa-gttacaattaaataacttaaacgacctaag 136  Q
    ||||| |||||||| |||  || ||| ||||||||||||||||||| || |||||||| |||||||||| ||||||||||||||||||||| ||||||||    
T  22519518 ctaagttatttaaccgtagcaatttgggggatttcagatcttaaaaatgtaagttatttgggacctaaaagttacaattaaataacttaaaggacctaag 22519419  T
Q  137 tgttatgaaaaatacttacataactaacttgtt 169  Q
    ||||| |||||||||||| |  |||||||||||    
T  22519418 tgttacgaaaaatacttaaaggactaacttgtt 22519386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 66 - 169
Target Start/End: Complemental strand, 31095228 - 31095124
Alignment:
Q  66 ggatttcagatcttaaaactgcaagttattcgggacctaaa-gttacaattaaataacttaaacgacctaagtgttatgaaaaatacttacataactaac 164  Q
    |||||||||||||||||| || |||||||||  |||||||| |||||||||||||||||||||  ||||||||||||  || |||||||| || | ||||    
T  31095228 ggatttcagatcttaaaaatgtaagttattcaagacctaaaagttacaattaaataacttaaagaacctaagtgttacaaacaatacttaaatgattaac 31095129  T
Q  165 ttgtt 169  Q
    |||||    
T  31095128 ttgtt 31095124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 39 - 169
Target Start/End: Original strand, 49291205 - 49291335
Alignment:
Q  39 taagctatttaactgtaagaaattgagggatttcagatcttaaaactgcaagttattcgggacctaaagttacaattaaataacttaaacgacctaagtg 138  Q
    |||| |||||||  |||| || || ||| |||||||||||| ||| || |||||| |||||    |||||||||||||||||||||||| ||| ||| ||    
T  49291205 taagttatttaatcgtaacaatttcaggaatttcagatcttcaaaatgtaagttactcgggtttaaaagttacaattaaataacttaaaagacttaaatg 49291304  T
Q  139 ttatgaaaaatacttacataactaacttgtt 169  Q
    |||| ||||||||||| || |||||||||||    
T  49291305 ttataaaaaatacttaaatgactaacttgtt 49291335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 229
Target Start/End: Complemental strand, 31095132 - 31095092
Alignment:
Q  189 taacttgttataattaaataacttaaatgacgtaagtgata 229  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  31095132 taacttgttataattaaataacttaaaggacgtaagtgata 31095092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 169
Target Start/End: Original strand, 51580077 - 51580140
Alignment:
Q  104 aaagttacaattaaataacttaaacgacctaagtgttatgaaaaatacttacataactaacttgtt 169  Q
    ||||||||||||||||||| |||| ||||||| ||||| |||||||||||| | ||||||||||||    
T  51580077 aaagttacaattaaataacgtaaa-gacctaaatgttacgaaaaatactta-agaactaacttgtt 51580140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 112 - 154
Target Start/End: Original strand, 53769786 - 53769828
Alignment:
Q  112 aattaaataacttaaacgacctaagtgttatgaaaaatactta 154  Q
    |||||||||| ||||| |||||||||| |||||||||||||||    
T  53769786 aattaaataatttaaaagacctaagtggtatgaaaaatactta 53769828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 3e-31; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 22 - 154
Target Start/End: Complemental strand, 4558902 - 4558769
Alignment:
Q  22 gtaccaattaggtcctctaagctatttaactgtaagaaattgagggatttcagatcttaaaactgcaagttattcgggacct-aaagttacaattaaata 120  Q
    |||||||||||||||| ||||||||||||| ||||  | |||||| |||| ||||||||||| ||||||||||||  | ||| |||||||||||||||||    
T  4558902 gtaccaattaggtcctttaagctatttaaccgtaactatttgaggtattttagatcttaaaaatgcaagttattcatggcctaaaagttacaattaaata 4558803  T
Q  121 acttaaacgacctaagtgttatgaaaaatactta 154  Q
    | ||||| ||||||||||||| ||||||||||||    
T  4558802 aattaaaagacctaagtgttacgaaaaatactta 4558769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 21 - 150
Target Start/End: Complemental strand, 8198637 - 8198509
Alignment:
Q  21 cgtaccaattaggtcctctaagctatttaactgtaagaaattgagggatttcagatcttaaaactgcaagttattcgggacct-aaagttacaattaaat 119  Q
    ||||||||||||||||| |||| |||||||| |||| || ||  ||||||||||||||||||| || |||||| | ||  ||| |||||| |||||||||    
T  8198637 cgtaccaattaggtcctttaagttatttaaccgtaacaatttaggggatttcagatcttaaaaatgtaagttagttggagcctaaaagtttcaattaaat 8198538  T
Q  120 aacttaaacgacctaagtgttatgaaaaata 150  Q
    ||||||||  |||||||||||| ||||||||    
T  8198537 aacttaaa--acctaagtgttaagaaaaata 8198509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 21 - 150
Target Start/End: Complemental strand, 8203397 - 8203269
Alignment:
Q  21 cgtaccaattaggtcctctaagctatttaactgtaagaaattgagggatttcagatcttaaaactgcaagttattcgggacct-aaagttacaattaaat 119  Q
    ||||||||||||||||| |||| |||||||| |||| || ||  ||||||||||||||||||| || |||||| | ||  ||| |||||| |||||||||    
T  8203397 cgtaccaattaggtcctttaagttatttaaccgtaacaatttaggggatttcagatcttaaaaatgtaagttagttggagcctaaaagtttcaattaaat 8203298  T
Q  120 aacttaaacgacctaagtgttatgaaaaata 150  Q
    ||||||||  |||||||||||| ||||||||    
T  8203297 aacttaaa--acctaagtgttaagaaaaata 8203269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 73 - 154
Target Start/End: Complemental strand, 6739554 - 6739472
Alignment:
Q  73 agatcttaaaactgcaagttattcgggacctaaagtt-acaattaaataacttaaacgacctaagtgttatgaaaaatactta 154  Q
    ||||||||||| || |||||||| | | | ||||||| |||||||||||||||||| ||||||| |||||  |||||||||||    
T  6739554 agatcttaaaaatgtaagttattagaggcttaaagtttacaattaaataacttaaatgacctaaatgttacaaaaaatactta 6739472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 109 - 169
Target Start/End: Complemental strand, 42054102 - 42054042
Alignment:
Q  109 tacaattaaataacttaaacgacctaagtgttatgaaaaatacttacataactaacttgtt 169  Q
    |||||||||||||||||||  ||||||||| || |||||||||||| |  |||||||||||    
T  42054102 tacaattaaataacttaaagaacctaagtgataggaaaaatacttaaaggactaacttgtt 42054042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 88 - 141
Target Start/End: Complemental strand, 4923607 - 4923553
Alignment:
Q  88 aagttattcgggacctaaa-gttacaattaaataacttaaacgacctaagtgtta 141  Q
    ||||||||||| ||||||| ||| |||||||||||||||||  ||||||||||||    
T  4923607 aagttattcggaacctaaaagttgcaattaaataacttaaagtacctaagtgtta 4923553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 1e-24; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 21 - 154
Target Start/End: Original strand, 16419703 - 16419837
Alignment:
Q  21 cgtaccaattaggtcctctaagctatttaactgtaagaaattgagggatttcagatcttaaaactgcaagttattcgggacctaaa-gttacaattaaat 119  Q
    |||||||||| | |||| |||| |||||||| |||| || ||||||||||| |||||||| || || |||||||| ||| |||||| ||| |||||||||    
T  16419703 cgtaccaatttgatcctttaagttatttaaccgtaacaatttgagggattttagatcttagaaatgtaagttatttggggcctaaaagtttcaattaaat 16419802  T
Q  120 aacttaaacgacctaagtgttatgaaaaatactta 154  Q
    |||||||| ||||||||||||| || |||||||||    
T  16419803 aacttaaaagacctaagtgttacgacaaatactta 16419837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 26 - 153
Target Start/End: Original strand, 196111 - 196238
Alignment:
Q  26 caattaggtcctctaagctatttaactgtaagaaattgagggatttcagatcttaaaactgcaagttattcgggacct-aaagttacaattaaataactt 124  Q
    |||||||||||| |||| || ||||| |||| || |||||| |||||| ||||||||| || ||||||||| || | | |||||||||||||||||||||    
T  196111 caattaggtcctttaagttacttaaccgtaacaatttgaggtatttcatatcttaaaaatgtaagttattcagggcttaaaagttacaattaaataactt 196210  T
Q  125 aaacgacctaagtgttatgaaaaatactt 153  Q
    ||| ||||||||||||  |||| ||||||    
T  196211 aaa-gacctaagtgtttcgaaatatactt 196238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 21 - 169
Target Start/End: Complemental strand, 17411270 - 17411121
Alignment:
Q  21 cgtaccaattaggtcctctaagctatttaactgtaagaaattgagggatttcagatcttaaaactgcaagttattcgg-gacctaaagttacaattaaat 119  Q
    ||||||||||| || || |||| |||||||  |||| || ||| ||||||||||||||||||| || ||||||||||| |||  || |||||||||||||    
T  17411270 cgtaccaattatgtactttaagttatttaatcgtaataatttgggggatttcagatcttaaaaatgtaagttattcggagactaaacgttacaattaaat 17411171  T
Q  120 aacttaaacgacctaagtgttatgaaaaatacttacataactaacttgtt 169  Q
    |||| ||| ||| || || ||| |||||||| ||| |  |||||||||||    
T  17411170 aactcaaaagacttatgtattacgaaaaatatttaaaagactaacttgtt 17411121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 151
Target Start/End: Original strand, 28477384 - 28477509
Alignment:
Q  27 aattaggtcctctaagctatttaactgtaagaaattgagggatttcagatcttaaaactgcaagttattcgggacct-aaagttacaattaaataactta 125  Q
    |||||||| || |||| |||| |||||||| || ||  | ||||| ||||||||||| || |||||||||||| ||| ||| |||| ||||||||| |||    
T  28477384 aattaggttctttaagttattgaactgtaataatttaggcgattttagatcttaaaaatgtaagttattcggggcctaaaaattacgattaaataattta 28477483  T
Q  126 aacgacctaagtgttatgaaaaatac 151  Q
    ||  |||||| |||||||||||||||    
T  28477484 aagaacctaactgttatgaaaaatac 28477509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 151
Target Start/End: Original strand, 29789836 - 29789961
Alignment:
Q  27 aattaggtcctctaagctatttaactgtaagaaattgagggatttcagatcttaaaactgcaagttattcgggacct-aaagttacaattaaataactta 125  Q
    |||||||| || |||| |||| |||||||| || ||  | ||||| ||||||||||| || |||||||||||| ||| ||| |||| ||||||||| |||    
T  29789836 aattaggttctttaagttattgaactgtaataatttaggcgattttagatcttaaaattgtaagttattcggggcctaaaaattacgattaaataattta 29789935  T
Q  126 aacgacctaagtgttatgaaaaatac 151  Q
    ||  |||||| |||||||||||||||    
T  29789936 aagaacctaactgttatgaaaaatac 29789961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 229
Target Start/End: Complemental strand, 17411131 - 17411089
Alignment:
Q  187 actaacttgttataattaaataacttaaatgacgtaagtgata 229  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  17411131 actaacttgttacaattaaataacttaaatgacgtaagtgata 17411089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 39 - 135
Target Start/End: Original strand, 32548138 - 32548235
Alignment:
Q  39 taagctatttaactgtaagaaattgagggatttcagatcttaaaactgcaagttattcgggacctaaa-gttacaattaaataacttaaacgacctaa 135  Q
    |||| |||||||| |||| || ||| || |||| | ||||||||| || ||| ||||||||| ||||| ||||||||||||||||||||| |||||||    
T  32548138 taagttatttaaccgtaacaatttgcggtattttaaatcttaaaaatgtaagctattcgggatctaaaagttacaattaaataacttaaaggacctaa 32548235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 169
Target Start/End: Complemental strand, 7004347 - 7004200
Alignment:
Q  22 gtaccaattaggtcctctaagctatttaactgtaagaaattgagggatttcagatcttaaaactgcaagttattcgggacctaaa-gttacaattaaata 120  Q
    ||||||||||||| || |||| |||||||| |||| || |||||  |||| ||||||||||| |  ||||||||| ||   |||| ||| ||||||||||    
T  7004347 gtaccaattaggttctttaagttatttaaccgtaacaatttgagaaattttagatcttaaaagtataagttattcagggtttaaatgttgcaattaaata 7004248  T
Q  121 acttaaacgacctaagtgttatgaaaaatacttacataactaacttgtt 169  Q
    ||||||| ||| |||||| ||  ||||||||||| |  |||||||||||    
T  7004247 acttaaa-gacataagtgatacaaaaaatacttaaaggactaacttgtt 7004200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 148
Target Start/End: Complemental strand, 33547933 - 33547849
Alignment:
Q  65 gggatttcagatcttaaaactgcaagttattcgggacctaaa-gttacaattaaataacttaaacgacctaagtgttatgaaaaa 148  Q
    ||||||||||| ||||||| |  ||||||||||  || |||| ||||||||||||||||||||| ||||||| || |||||||||    
T  33547933 gggatttcagaccttaaaaatttaagttattcgaaacttaaaagttacaattaaataacttaaaggacctaaatggtatgaaaaa 33547849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 126
Target Start/End: Original strand, 7202313 - 7202419
Alignment:
Q  21 cgtaccaattaggtcctctaagctatttaactgtaagaaattgagggatttcagatcttaaaactgcaagttattcgggacctaaa-gttacaattaaat 119  Q
    ||||||| ||||||||| || | || |||| ||||| |  ||| | ||||| ||||||||||| |  |||||||||||| |||||| |||||||||||||    
T  7202313 cgtaccatttaggtcctttatgttaattaattgtaacatgttgggagattttagatcttaaaaatttaagttattcggggcctaaaagttacaattaaat 7202412  T
Q  120 aacttaa 126  Q
    |||||||    
T  7202413 aacttaa 7202419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 73 - 146
Target Start/End: Complemental strand, 10544210 - 10544136
Alignment:
Q  73 agatcttaaaactgcaagttattcgggacctaaa-gttacaattaaataacttaaacgacctaagtgttatgaaa 146  Q
    ||||||||||| || || ||||||  |||||||| ||||||||||| ||||||||| ||||||||||||| ||||    
T  10544210 agatcttaaaaatgtaaattattcaagacctaaaagttacaattaactaacttaaatgacctaagtgttacgaaa 10544136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 127
Target Start/End: Original strand, 29693282 - 29693383
Alignment:
Q  27 aattaggtcctctaagctatttaactgtaagaaattgagggatttcagatcttaaaactgcaagttattcgggacct-aaagttacaattaaataactta 125  Q
    |||||||| || |||| |||| |||||||| || ||  | ||||| ||||||||||| || |||||||||||| ||| |||||||| ||||||||| |||    
T  29693282 aattaggttctttaagttattgaactgtaataatttaggcgattttagatcttaaaaatgtaagttattcgggtcctaaaagttacgattaaataattta 29693381  T
Q  126 aa 127  Q
    ||    
T  29693382 aa 29693383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 196244 - 196287
Alignment:
Q  187 actaacttgttataattaaataacttaaatgacgtaagtgatac 230  Q
    ||||| || ||| |||||||||||||||||||||||||||||||    
T  196244 actaaattattacaattaaataacttaaatgacgtaagtgatac 196287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 138
Target Start/End: Original strand, 9405267 - 9405362
Alignment:
Q  44 tatttaactgtaagaaattgagggatttcagatcttaaaactgcaagttattcgggaccta-aagttacaattaaataacttaaacgacctaagtg 138  Q
    |||||||| |||| || |||||| |||||||||||||||| |   |||||||||| |  || || |||||||||||||||||||| || |||||||    
T  9405267 tatttaaccgtaacaatttgaggaatttcagatcttaaaaattttagttattcggcatttataaattacaattaaataacttaaaggatctaagtg 9405362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 39 - 157
Target Start/End: Original strand, 30534547 - 30534666
Alignment:
Q  39 taagctatttaactgtaagaaattgagggatttcagatcttaaaactgcaagttattcgggaccta-aagttacaattaaataacttaaacgacctaagt 137  Q
    |||| ||||||||||||| || |||||   ||| ||||||||||| || |||||||| ||| |||| ||||||||||||||||| ||||| |||||||||    
T  30534547 taagttatttaactgtaacaatttgagatgttttagatcttaaaaatgtaagttatttggggcctacaagttacaattaaataatttaaaagacctaagt 30534646  T
Q  138 gttatgaaaaatacttacat 157  Q
     ||| |||||||||||||||    
T  30534647 cttacgaaaaatacttacat 30534666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 154
Target Start/End: Complemental strand, 51265860 - 51265744
Alignment:
Q  39 taagctatttaactgtaagaaattgagggatttcagatcttaaaactgcaagttattcgggacct-aaagttacaattaaataacttaaacgacctaagt 137  Q
    |||| |||||||| |||| || ||||| ||||||||||||||||| |  ||||| |||  | | | ||| |||||||||||||||||||| || ||||||    
T  51265860 taagttatttaaccgtaacaatttgagagatttcagatcttaaaaatttaagtttttcaaggcttgaaatttacaattaaataacttaaaggatctaagt 51265761  T
Q  138 gttatgaaaaatactta 154  Q
      |||||||||||||||    
T  51265760 tgtatgaaaaatactta 51265744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 106
Target Start/End: Original strand, 44291115 - 44291182
Alignment:
Q  39 taagctatttaactgtaagaaattgagggatttcagatcttaaaactgcaagttattcgggacctaaa 106  Q
    |||| |||||||| |||| || ||  ||||||| ||||||||||| || |||||||||||||||||||    
T  44291115 taagttatttaaccgtaacaattttggggattttagatcttaaaaatgtaagttattcgggacctaaa 44291182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 44291420 - 44291463
Alignment:
Q  187 actaacttgttataattaaataacttaaatgacgtaagtgatac 230  Q
    |||||||||||| |||||||||||||||| ||| ||||||||||    
T  44291420 actaacttgttacaattaaataacttaaaggacataagtgatac 44291463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 50898948 - 50898882
Alignment:
Q  88 aagttattcgggacctaaa-gttacaattaaataacttaaacgacctaagtgttatgaaaaatactta 154  Q
    |||||||||| ||| |||| |||||||||||| ||||||||  |||||||||||| ||||||||||||    
T  50898948 aagttattcgagacgtaaaagttacaattaaacaacttaaat-acctaagtgttacgaaaaatactta 50898882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 23 - 153
Target Start/End: Original strand, 29954870 - 29955000
Alignment:
Q  23 taccaattaggtcctctaagctatttaactgtaagaaattgagggatttcagatcttaaaactgcaagttattc-gggacctaaagttacaattaaataa 121  Q
    ||||||||||||||| |||| |||||||| |||| || |||  | |||||| ||||||||| || ||||||||| |||||  ||||||||||||||||||    
T  29954870 taccaattaggtcctttaagttatttaaccgtaataatttggagaatttcatatcttaaaaatgtaagttattctgggactaaaagttacaattaaataa 29954969  T
Q  122 cttaaacgacctaagtgttatgaaaaatactt 153  Q
    |||||| |||||||||| || | |||||||||    
T  29954970 cttaaa-gacctaagtggtacggaaaatactt 29955000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 61 - 154
Target Start/End: Complemental strand, 47726551 - 47726457
Alignment:
Q  61 ttgagggatttcagatcttaaaactgcaagttattcgggacctaaa-gttacaattaaataacttaaacgacctaagtgttatgaaaaatactta 154  Q
    |||||| |||||| ||||||||| |||||||||||||||| ||||| |||||||||||||||||||||  ||||||||||||  || ||||||||    
T  47726551 ttgaggaatttcatatcttaaaaatgcaagttattcgggatctaaaagttacaattaaataacttaaagcacctaagtgttacaaacaatactta 47726457  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 61 - 154
Target Start/End: Complemental strand, 47747857 - 47747763
Alignment:
Q  61 ttgagggatttcagatcttaaaactgcaagttattcgggacctaaa-gttacaattaaataacttaaacgacctaagtgttatgaaaaatactta 154  Q
    |||||| |||||| ||||||||| |||||||||||||||| ||||| |||||||||||||||||||||  ||||||||||||  || ||||||||    
T  47747857 ttgaggaatttcatatcttaaaaatgcaagttattcgggatctaaaagttacaattaaataacttaaagcacctaagtgttacaaacaatactta 47747763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 154
Target Start/End: Original strand, 363718 - 363853
Alignment:
Q  21 cgtaccaattaggtcctctaagctatttaactgtaagaaattgaggg-atttcagatcttaaaactgcaagttattcgggacctaaa-gttacaattaaa 118  Q
    ||||| ||||||||| | |||| |||||||| |||| || ||  ||| |||| ||||||||||| || ||||||||| || |||||| ||||||||||||    
T  363718 cgtactaattaggtcatttaagttatttaaccgtaacaatttttgggtattttagatcttaaaaatgtaagttattctgggcctaaaagttacaattaaa 363817  T
Q  119 taacttaaacgacctaagtgttatgaaaaatactta 154  Q
     |||||||| ||| ||||  ||| ||||||||||||    
T  363818 caacttaaatgacttaagcattacgaaaaatactta 363853  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 26706274 - 26706207
Alignment:
Q  88 aagttattcgggacctaaa-gttacaattaaataacttaaacgacctaagtgttatgaaaaatactta 154  Q
    |||||||||| | |||||| |||||||||||||||||||||  |||||||||||| ||||| ||||||    
T  26706274 aagttattcgaggcctaaaagttacaattaaataacttaaagaacctaagtgttacgaaaactactta 26706207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 108 - 154
Target Start/End: Original strand, 18470384 - 18470430
Alignment:
Q  108 ttacaattaaataacttaaacgacctaagtgttatgaaaaatactta 154  Q
    |||||||||||||||||||| || ||||||  |||||||||||||||    
T  18470384 ttacaattaaataacttaaaggatctaagttgtatgaaaaatactta 18470430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 169
Target Start/End: Complemental strand, 47600648 - 47600499
Alignment:
Q  21 cgtaccaattaggtcctctaagctatttaactgtaagaaattgagggatttcagatcttaaaactgcaagttattcgggacctaaa-gttacaattaaat 119  Q
    |||||||||| |||| | |||| |||||||  |||| |  ||| || ||||||||| |||||| |  |||| ||| ||| |||||| ||||||||||||     
T  47600648 cgtaccaatttggtcatttaagttatttaatcgtaaaagtttgtggtatttcagatgttaaaaattgaagtaatttgggtcctaaaagttacaattaaac 47600549  T
Q  120 aacttaaacgacctaagtgttatgaaaaatacttacataactaacttgtt 169  Q
    ||||  || ||||||||  ||| |||||||||||| || ||||| |||||    
T  47600548 aactcgaaagacctaagcattacgaaaaatacttaaatgactaatttgtt 47600499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 11016945 - 11016877
Alignment:
Q  25 ccaattaggtcctctaagctatttaactgtaagaaattgagggatttcagatcttaaaactgcaagtta 93  Q
    ||||||||||||| ||| ||||||||| |||| || ||||| ||||| | ||||||||| || ||||||    
T  11016945 ccaattaggtcctttaaactatttaaccgtaacaatttgagagatttaaaatcttaaaaatgtaagtta 11016877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 22 - 169
Target Start/End: Complemental strand, 41331315 - 41331168
Alignment:
Q  22 gtaccaattaggtcctctaagctatttaactgtaagaaattgagggatttcagatcttaaaactgcaagttattcgggacctaaa-gttacaattaaata 120  Q
    |||||||| ||||| | |||| |||||||| |||| || ||  ||||||  ||||| ||||| |  ||||||||||  ||||||| |||| |||||||||    
T  41331315 gtaccaatgaggtcatttaagttatttaaccgtaacaattttggggattctagatcctaaaaattgaagttattcgatacctaaaagttataattaaata 41331216  T
Q  121 acttaaacgacctaagtgttatgaaaaatacttacataactaacttgtt 169  Q
    ||||||| |||||||||| ||||||||||| ||| |  |||||||||||    
T  41331215 acttaaa-gacctaagtgctatgaaaaatatttaaactactaacttgtt 41331168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 68 - 154
Target Start/End: Complemental strand, 48447402 - 48447315
Alignment:
Q  68 atttcagatcttaaaactgcaagttattcgggacctaaa-gttacaattaaataacttaaacgacctaagtgttatgaaaaatactta 154  Q
    |||| ||||||||||| || ||||||||  || | |||| ||||||||||||||||||||| |||||||| |||| ||||||||||||    
T  48447402 attttagatcttaaaaatgtaagttattttgggcataaaagttacaattaaataacttaaaggacctaagcgttacgaaaaatactta 48447315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 65 - 154
Target Start/End: Complemental strand, 12264890 - 12264801
Alignment:
Q  65 gggatttcagatcttaaaactgcaagttattcgggacctaaagttacaattaaataacttaaacgacctaagtgttatgaaaaatactta 154  Q
    ||||||||| ||||| ||| || |||||||||  | || ||||||||| ||||||||||| || |||||||||| || ||||||||||||    
T  12264890 gggatttcaaatctttaaaatgtaagttattcatggccaaaagttacacttaaataacttgaaagacctaagtggtacgaaaaatactta 12264801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 154
Target Start/End: Original strand, 12422262 - 12422342
Alignment:
Q  75 atcttaaaactgcaagttattcgggacctaaa-gttacaattaaataacttaaacgacctaagtgttatgaaaaatactta 154  Q
    ||||||||| |  ||||||||||||||||||| ||||||||||||||||||||| ||  |||||||||  || ||||||||    
T  12422262 atcttaaaagtataagttattcgggacctaaaagttacaattaaataacttaaaggatttaagtgttacaaacaatactta 12422342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 103 - 154
Target Start/End: Complemental strand, 28002330 - 28002279
Alignment:
Q  103 taaagttacaattaaataacttaaacgacctaagtgttatgaaaaatactta 154  Q
    |||||||||||||||| |||||||| |||||||||| |||||||| ||||||    
T  28002330 taaagttacaattaaacaacttaaaggacctaagtggtatgaaaagtactta 28002279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 108 - 148
Target Start/End: Complemental strand, 32857890 - 32857850
Alignment:
Q  108 ttacaattaaataacttaaacgacctaagtgttatgaaaaa 148  Q
    |||||||||||||||||||| ||||||||||||| ||||||    
T  32857890 ttacaattaaataacttaaaagacctaagtgttacgaaaaa 32857850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 192 - 230
Target Start/End: Original strand, 12422352 - 12422390
Alignment:
Q  192 cttgttataattaaataacttaaatgacgtaagtgatac 230  Q
    ||||||| |||||||||||||||| ||||||||||||||    
T  12422352 cttgttaaaattaaataacttaaaagacgtaagtgatac 12422390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 121 - 169
Target Start/End: Complemental strand, 28002283 - 28002235
Alignment:
Q  121 acttaaacgacctaagtgttatgaaaaatacttacataactaacttgtt 169  Q
    ||||||| |||||||||| ||||||||||||||| |  |||||||||||    
T  28002283 acttaaatgacctaagtggtatgaaaaatacttaaaggactaacttgtt 28002235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 187 - 219
Target Start/End: Complemental strand, 32857837 - 32857805
Alignment:
Q  187 actaacttgttataattaaataacttaaatgac 219  Q
    |||||||||||| ||||||||||||||||||||    
T  32857837 actaacttgttacaattaaataacttaaatgac 32857805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 169
Target Start/End: Complemental strand, 3807000 - 3806871
Alignment:
Q  39 taagctatttaactgtaagaaattgagggatttcagatcttaaaactgcaagttattcgggacctaaagttacaattaaataacttaaacgacctaagtg 138  Q
    |||| ||||||||||||| || |||||  |||||| ||||||||| || |||||| || || |  ||| ||| |||||||||| | ||| ||||||||||    
T  3807000 taagttatttaactgtaacaa-ttgagatatttcatatcttaaaaatgtaagttactcagggctaaaaattataattaaataattaaaaggacctaagtg 3806902  T
Q  139 ttatgaaaaatacttacataactaacttgtt 169  Q
     || |||||||||||| || |||||||||||    
T  3806901 ctacgaaaaatacttaaatgactaacttgtt 3806871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 21 - 169
Target Start/End: Original strand, 2510114 - 2510263
Alignment:
Q  21 cgtaccaattaggtcctctaagctatttaactgtaagaaattgagggatttcagatcttaaaactgcaagttattcgggacctaaag-ttacaattaaat 119  Q
    ||||| |||||| |||| |||| || |||| || || || ||||| ||||||| || |||||| || |||||||||| |  |||||  ||||| ||||||    
T  2510114 cgtacaaattagatcctttaagttacttaattgcaacaatttgagagatttcatattttaaaaatgtaagttattcgtggtctaaaaattacacttaaat 2510213  T
Q  120 aacttaaacgacctaagtgttatgaaaaatacttacataactaacttgtt 169  Q
    |||||||| || ||||||||||  ||||||| ||| | ||||||||||||    
T  2510214 aacttaaaggagctaagtgttacaaaaaataattaaagaactaacttgtt 2510263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 18080645 - 18080600
Alignment:
Q  184 ataactaacttgttataattaaataacttaaatgacgtaagtgata 229  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||    
T  18080645 ataactaacttattacaattaaataacttaaatgacgtaagtgata 18080600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 22 - 154
Target Start/End: Original strand, 12189869 - 12190002
Alignment:
Q  22 gtaccaattaggtcctctaagctatttaactgtaagaaattga-gggatttcagatcttaaaactgcaagttattcgggacct-aaagttacaattaaat 119  Q
    |||||||||||||| | |||| ||||||||||| | ||||| | || |||||||||||| |||  | ||| |||| |||  || ||||||||||||||||    
T  12189869 gtaccaattaggtcatttaagttatttaactgt-acaaattaacggaatttcagatcttgaaaacgtaagatattaggggtctaaaagttacaattaaat 12189967  T
Q  120 aacttaaacgacctaagtgttatgaaaaatactta 154  Q
    || |||||  ||||||||||||   ||||||||||    
T  12189968 aaattaaagaacctaagtgttacagaaaatactta 12190002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 22 - 154
Target Start/End: Original strand, 12434297 - 12434430
Alignment:
Q  22 gtaccaattaggtcctctaagctatttaactgtaagaaattga-gggatttcagatcttaaaactgcaagttattcgggacct-aaagttacaattaaat 119  Q
    |||||||||||||| | |||| ||||||||||| | ||||| | || |||||||||||| |||  | ||| |||| |||  || ||||||||||||||||    
T  12434297 gtaccaattaggtcatttaagttatttaactgt-acaaattaacggaatttcagatcttgaaaacgtaagatattaggggtctaaaagttacaattaaat 12434395  T
Q  120 aacttaaacgacctaagtgttatgaaaaatactta 154  Q
    || |||||  ||||||||||||   ||||||||||    
T  12434396 aaattaaagaacctaagtgttacagaaaatactta 12434430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 168
Target Start/End: Complemental strand, 8453163 - 8453098
Alignment:
Q  104 aaagttacaattaaataacttaaacg-acctaagtgttatgaaaaatacttacataactaacttgt 168  Q
    ||||||||||| |||||||||||| | |  |||||||||||| ||||||||| || ||||||||||    
T  8453163 aaagttacaatcaaataacttaaaaggatgtaagtgttatgagaaatacttaaatgactaacttgt 8453098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 33 - 148
Target Start/End: Original strand, 32566752 - 32566867
Alignment:
Q  33 gtcctctaagctatttaactgtaagaaattgagggatttcagatcttaaaactgcaagttattcgggacctaaa-gttacaattaaataacttaaacgac 131  Q
    ||||| |||| |||||||| |||| || ||  | ||||||| ||||||||| |  |||||||||| |||||||| ||| ||||| |||||| |||| ||     
T  32566752 gtcctttaagttatttaaccgtaacaatttaggagatttcaaatcttaaaa-tataagttattcgagacctaaaagtttcaattcaataacgtaaaagat 32566850  T
Q  132 ctaagtgttatgaaaaa 148  Q
     ||||||||||||||||    
T  32566851 gtaagtgttatgaaaaa 32566867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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