View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5222-Insertion-1 (Length: 903)
Name: NF5222-Insertion-1
Description: NF5222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5222-Insertion-1 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 516; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 335 - 892
Target Start/End: Original strand, 1249133 - 1249691
Alignment:
| Q |
335 |
ctgtttgtttctttgctagacccggttaacgatatgtgagggtcatgatgggactgaaacgtctaatggggatgtgttaatctttcctgacatgatcaga |
434 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
1249133 |
ctgtttgtttctttgctagacccggttaacgatatgtgagggtcatgatgggactgaaacatctaatggggatgtgttaatctttcctgacatgatcaga |
1249232 |
T |
|
| Q |
435 |
tacaggtcagtgtgagtgttgttttgctgcatttgattcccttgtgaaggtttttcttttgtttgttgactacaaaatattgtgttaatattgcaggaga |
534 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1249233 |
tacaggttagtgtgagcgttgttttgctgcatttgattcccttgtgaaggtttttcttttgtttgttgactacaaaatattgtgttaatattgcaggaga |
1249332 |
T |
|
| Q |
535 |
ttgacacattttgatgttgaaacttttgttgaagaagttcttgtgaagaatggagagtggctacctggaacacctg-aactctgaaaggttcatatgttt |
633 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
1249333 |
ttgacacattttgatgttgaaacttttgttgaagaagttcttgtgaagaatggagagtggctacctggaacacctgaaactctgaaaggttcatatgttt |
1249432 |
T |
|
| Q |
634 |
ttgtgtgttcacatggatcacgtgatcgtagatgtggggtttgtggacctgttttggttaatagattcagggaagaaatagagtatcatggtctacaagg |
733 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1249433 |
ttgtgtgttcacatggatcacgtgatcgtagatgtggggtttgtggacctgttttggttaatagattcagggaagaaatagagtatcatggtctacaagg |
1249532 |
T |
|
| Q |
734 |
taaggtatttgttagcccatgctcgcacattgggggacataagtatgcaggaaatgtcgttatatttggatcaagcatgaatggaggaagtcactggaca |
833 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
1249533 |
taaagtatttgttagcccatgctcgcacattgggggacataagtatgcaggaaatgtcattatatttggatcaagcatgaatgga-gaagtcactggaca |
1249631 |
T |
|
| Q |
834 |
tt-gtaaggagaagacctgctcggttatcaaaattctttatctcaagaactttctgttta |
892 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1249632 |
ttggtaaggagaagacctgctcggttatcaaaattctttatctcaagaactttctgttta |
1249691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 7 - 330
Target Start/End: Original strand, 1248768 - 1249093
Alignment:
| Q |
7 |
ataatccacttgaaatttgtgaggtttgaactttaaagtttctcttnnnnnnnnnn--ctttaaatttaagtactatatgatctgtaaagggcttttaat |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||| |
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|
| T |
1248768 |
ataatccacttgaaatttgtgaggtttgaactttaaagtttctcttaaaataaaaaaactttaaatataagtactatatgatctgtaaagtgcttttaat |
1248867 |
T |
|
| Q |
105 |
tgaatgtgttgtgaaaatgtgctaattgattttttacaaggttatgtggttatggtgatttgtcagttatgaacttgtaaaaatttaagcttttgggtta |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1248868 |
tgaatgtgttgtgaaaatgtgctaattgattttttacaaggttatgtggttatggtgatttgtcagttatgaacttgtaaaaatttaagcttttgggtta |
1248967 |
T |
|
| Q |
205 |
aatattgtagggtgatgaatcatgaatgatccacttaaattgttggtgtcatggnnnnnnngatagcgaggttatacctttttaagttagctgtatgatc |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1248968 |
aatattgtagggtgatgaatcatgaatgatccacttaaattgttggtgtcatggtttttttgatagcgaggttatacctttttaagttagctgtatgatc |
1249067 |
T |
|
| Q |
305 |
tgtttagtgctagttgattgcattgt |
330 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
1249068 |
tgtttagtgctagttgattgcattgt |
1249093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 137
Target Start/End: Original strand, 1248418 - 1248482
Alignment:
| Q |
71 |
ttaagtactatatgatctgtaaagggcttttaattgaatgtgttgtgaaaatgtgctaattgatttt |
137 |
Q |
| |
|
||||| |||||||||| ||| ||| |||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1248418 |
ttaagaactatatgatttgttaagtgctt--aattgaatgtgttgtgaaaatgtgttaattgatttt |
1248482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 132
Target Start/End: Original strand, 1248059 - 1248092
Alignment:
| Q |
99 |
tttaattgaatgtgttgtgaaaatgtgctaattg |
132 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |
|
|
| T |
1248059 |
tttaattgaatgtattgtgaaaatgtgctaattg |
1248092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 137
Target Start/End: Original strand, 1248635 - 1248672
Alignment:
| Q |
100 |
ttaattgaatgtgttgtgaaaatgtgctaattgatttt |
137 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
1248635 |
ttaattgaatgtattgtgaaaatgtgctaattcatttt |
1248672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 203
Target Start/End: Original strand, 1248695 - 1248728
Alignment:
| Q |
170 |
gttatgaacttgtaaaaatttaagcttttgggtt |
203 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |
|
|
| T |
1248695 |
gttataaacttgtaaaaatttaagcttttgggtt |
1248728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 512; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 335 - 892
Target Start/End: Original strand, 42015913 - 42016471
Alignment:
| Q |
335 |
ctgtttgtttctttgctagacccggttaacgatatgtgagggtcatgatgggactgaaacgtctaatggggatgtgttaatctttcctgacatgatcaga |
434 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42015913 |
ctgtttgtttctttgctagacccggttaacgatatgtgagggtcatgatgggactgaaacatctaatggggatgtgttaatctttcctgacatgatcaga |
42016012 |
T |
|
| Q |
435 |
tacaggtcagtgtgagtgttgttttgctgcatttgattcccttgtgaaggtttttcttttgtttgttgactacaaaatattgtgttaatattgcaggaga |
534 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42016013 |
tacaggttagtgtgagcgttgttttgctgcatttgattcccttgtgaaggtttttcttttgtttgttgactacaaaatattgtgttaatattgcaggaga |
42016112 |
T |
|
| Q |
535 |
ttgacacattttgatgttgaaacttttgttgaagaagttcttgtgaagaatggagagtggctacctggaacacctg-aactctgaaaggttcatatgttt |
633 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
42016113 |
ttgacacattttgatgttgaaacttttgttgaagaagttcttgtgaagaatggagagtggctacctggaacacctgaaactctgaaaggttcatatgttt |
42016212 |
T |
|
| Q |
634 |
ttgtgtgttcacatggatcacgtgatcgtagatgtggggtttgtggacctgttttggttaatagattcagggaagaaatagagtatcatggtctacaagg |
733 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42016213 |
ttgtgtgttcacatggatcacgtgatcgtagatgtggggtttgtggacctgttttggttaatagattcagggaagaaatagagtatcatggtctacaagg |
42016312 |
T |
|
| Q |
734 |
taaggtatttgttagcccatgctcgcacattgggggacataagtatgcaggaaatgtcgttatatttggatcaagcatgaatggaggaagtcactggaca |
833 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
42016313 |
taaagtatttgttagcccatgctcgcacattgggggacataagtatgcaggaaatgtcattatatttggatcaagcatgaatgga-gaagtcactggaca |
42016411 |
T |
|
| Q |
834 |
tt-gtaaggagaagacctgctcggttatcaaaattctttatctcaagaactttctgttta |
892 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
42016412 |
ttggtaaggagaagacctgctcggttatcaaaactctttatctcaagaactttctgttta |
42016471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 7 - 330
Target Start/End: Original strand, 42015550 - 42015873
Alignment:
| Q |
7 |
ataatccacttgaaatttgtgaggtttgaactttaaagtttctcttnnnnnnnnnnctttaaatttaagtactatatgatctgtaaagggcttttaattg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
42015550 |
ataatccacttgaaatttgtgaggtttgaactttaaagtttctcttaaaaaaaaaactttaaatttaagtactatatgatctgtaaagtgcttttaattg |
42015649 |
T |
|
| Q |
107 |
aatgtgttgtgaaaatgtgctaattgattttttacaaggttatgtggttatggtgatttgtcagttatgaacttgtaaaaatttaagcttttgggttaaa |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42015650 |
aatgtgttgtgaaaatgtgctaattgattttttacaaggttatgttgttatggtgatttgtcagttatgaacttgtaaaaatttaagcttttgggttaaa |
42015749 |
T |
|
| Q |
207 |
tattgtagggtgatgaatcatgaatgatccacttaaattgttggtgtcatggnnnnnnngatagcgaggttatacctttttaagttagctgtatgatctg |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42015750 |
tattgtagggtgatgaatcatgaatgatccacttaaattgttggtgtcatggtttttttgatagcgaggttatacctttttaagttagctgtatgatctg |
42015849 |
T |
|
| Q |
307 |
tttagtgctagttgattgcattgt |
330 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
42015850 |
tttagtgctagttgattgcattgt |
42015873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 139
Target Start/End: Original strand, 42015200 - 42015266
Alignment:
| Q |
71 |
ttaagtactatatgatctgtaaagggcttttaattgaatgtgttgtgaaaatgtgctaattgatttttt |
139 |
Q |
| |
|
||||| |||||||||| ||| ||| |||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
42015200 |
ttaagaactatatgatttgttaagtgctt--aattgaatgtgttgtgaaaatgtgttaattgatttttt |
42015266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 137
Target Start/End: Original strand, 42015417 - 42015454
Alignment:
| Q |
100 |
ttaattgaatgtgttgtgaaaatgtgctaattgatttt |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
42015417 |
ttaattgaatgtgttgtgaaaatgtgctaattcatttt |
42015454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 203
Target Start/End: Original strand, 42015477 - 42015510
Alignment:
| Q |
170 |
gttatgaacttgtaaaaatttaagcttttgggtt |
203 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |
|
|
| T |
42015477 |
gttataaacttgtaaaaatttaagcttttgggtt |
42015510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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