View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5222-Insertion-2 (Length: 782)

Name: NF5222-Insertion-2
Description: NF5222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5222-Insertion-2
NF5222-Insertion-2
[»] chr3 (23 HSPs)
chr3 (8-782)||(9800479-9801253)
chr3 (517-698)||(17143651-17143835)
chr3 (471-748)||(2311690-2311970)
chr3 (8-212)||(9802065-9802282)
chr3 (523-685)||(30606947-30607111)
chr3 (592-778)||(8122893-8123080)
chr3 (504-749)||(28723662-28723911)
chr3 (582-661)||(16704446-16704525)
chr3 (591-676)||(28715465-28715551)
chr3 (587-730)||(21342260-21342405)
chr3 (589-764)||(20622345-20622524)
chr3 (583-731)||(431285-431435)
chr3 (587-716)||(12516172-12516303)
chr3 (627-731)||(1770797-1770903)
chr3 (604-731)||(17485614-17485743)
chr3 (293-375)||(9802386-9802467)
chr3 (582-720)||(14860067-14860207)
chr3 (662-741)||(21649375-21649455)
chr3 (607-685)||(13932963-13933042)
chr3 (589-749)||(12731536-12731698)
chr3 (508-552)||(6109549-6109593)
chr3 (614-685)||(13085073-13085145)
chr3 (670-748)||(1475704-1475783)
[»] chr6 (38 HSPs)
chr6 (476-780)||(18147229-18147536)
chr6 (486-748)||(30680947-30681212)
chr6 (507-698)||(19305469-19305663)
chr6 (607-744)||(3404855-3404994)
chr6 (584-720)||(9291990-9292127)
chr6 (582-730)||(22572018-22572167)
chr6 (506-731)||(11087474-11087702)
chr6 (586-731)||(20148289-20148434)
chr6 (586-731)||(22184394-22184539)
chr6 (587-704)||(15480314-15480433)
chr6 (507-782)||(33596782-33597060)
chr6 (606-730)||(34187272-34187397)
chr6 (577-679)||(16130993-16131096)
chr6 (583-685)||(34572963-34573066)
chr6 (585-678)||(17380123-17380217)
chr6 (582-749)||(12424282-12424452)
chr6 (585-749)||(31295506-31295672)
chr6 (584-680)||(689828-689924)
chr6 (508-661)||(31423731-31423884)
chr6 (599-679)||(4251029-4251110)
chr6 (607-659)||(12203631-12203683)
chr6 (627-741)||(16343541-16343657)
chr6 (606-731)||(9277293-9277419)
chr6 (582-731)||(12449551-12449702)
chr6 (582-661)||(19277044-19277123)
chr6 (583-720)||(27860917-27861056)
chr6 (583-676)||(18566685-18566779)
chr6 (579-703)||(19730556-19730682)
chr6 (583-731)||(34064167-34064317)
chr6 (588-680)||(10115659-10115752)
chr6 (581-694)||(14268440-14268556)
chr6 (582-680)||(9403196-9403295)
chr6 (621-720)||(14080467-14080567)
chr6 (587-635)||(22692162-22692210)
chr6 (586-633)||(27772537-27772584)
chr6 (627-743)||(12488009-12488127)
chr6 (604-731)||(22497288-22497417)
chr6 (584-622)||(13823348-13823386)
[»] chr7 (20 HSPs)
chr7 (520-746)||(5863144-5863373)
chr7 (507-703)||(26762803-26763002)
chr7 (582-774)||(13292091-13292285)
chr7 (580-661)||(29373490-29373571)
chr7 (588-698)||(9135335-9135447)
chr7 (620-731)||(21161214-21161326)
chr7 (579-778)||(39879312-39879514)
chr7 (613-774)||(9867938-9868101)
chr7 (505-643)||(43171926-43172065)
chr7 (607-720)||(7486528-7486643)
chr7 (582-731)||(16987060-16987211)
chr7 (582-737)||(12644751-12644909)
chr7 (508-659)||(16203768-16203920)
chr7 (587-656)||(16204340-16204409)
chr7 (582-704)||(10287564-10287688)
chr7 (582-720)||(5925443-5925583)
chr7 (507-554)||(16204442-16204490)
chr7 (586-645)||(12265097-12265156)
chr7 (584-634)||(1815512-1815562)
chr7 (627-698)||(5929024-5929097)
[»] chr5 (15 HSPs)
chr5 (520-778)||(26994511-26994772)
chr5 (582-735)||(27083206-27083360)
chr5 (589-744)||(22903052-22903209)
chr5 (582-735)||(25537373-25537528)
chr5 (582-745)||(20025241-20025406)
chr5 (507-661)||(32418378-32418533)
chr5 (585-774)||(22865690-22865881)
chr5 (582-685)||(24647307-24647411)
chr5 (588-717)||(8938898-8939028)
chr5 (608-651)||(34493567-34493610)
chr5 (579-680)||(25333759-25333861)
chr5 (515-557)||(8939059-8939102)
chr5 (631-681)||(19993182-19993233)
chr5 (662-720)||(26348128-26348187)
chr5 (667-720)||(24546330-24546383)
[»] chr4 (19 HSPs)
chr4 (577-737)||(12683751-12683913)
chr4 (507-703)||(47253277-47253476)
chr4 (507-656)||(2674466-2674616)
chr4 (582-745)||(19809660-19809824)
chr4 (585-677)||(19643729-19643822)
chr4 (582-778)||(29157027-29157225)
chr4 (583-730)||(5518513-5518662)
chr4 (514-744)||(10981825-10982056)
chr4 (586-729)||(15514533-15514678)
chr4 (583-742)||(15742122-15742283)
chr4 (615-657)||(19818741-19818783)
chr4 (585-633)||(50151775-50151823)
chr4 (604-717)||(14602005-14602120)
chr4 (673-749)||(3981904-3981981)
chr4 (585-661)||(26894693-26894768)
chr4 (582-633)||(3642974-3643025)
chr4 (685-720)||(17110681-17110716)
chr4 (509-548)||(29157260-29157299)
chr4 (592-633)||(13171137-13171178)
[»] scaffold0023 (1 HSPs)
scaffold0023 (514-704)||(95709-95902)
[»] chr1 (24 HSPs)
chr1 (509-762)||(16050335-16050591)
chr1 (582-720)||(26977723-26977863)
chr1 (587-746)||(34273044-34273205)
chr1 (579-725)||(12177364-12177512)
chr1 (604-749)||(22414729-22414876)
chr1 (584-741)||(16030357-16030516)
chr1 (582-731)||(33101475-33101626)
chr1 (573-698)||(5671775-5671902)
chr1 (604-774)||(52565508-52565681)
chr1 (514-717)||(2140847-2141049)
chr1 (590-745)||(18246101-18246257)
chr1 (589-719)||(23280237-23280367)
chr1 (607-745)||(5459702-5459841)
chr1 (582-661)||(12032221-12032299)
chr1 (579-730)||(4601452-4601605)
chr1 (635-774)||(14255051-14255192)
chr1 (584-763)||(23728790-23728970)
chr1 (585-635)||(8019018-8019068)
chr1 (620-745)||(43344450-43344575)
chr1 (587-720)||(1659762-1659897)
chr1 (585-749)||(21682561-21682727)
chr1 (510-563)||(26977891-26977944)
chr1 (604-720)||(25408079-25408197)
chr1 (631-774)||(16299591-16299735)
[»] chr8 (22 HSPs)
chr8 (585-707)||(30477637-30477761)
chr8 (519-731)||(18322915-18323130)
chr8 (528-743)||(13754718-13754936)
chr8 (538-680)||(26916821-26916965)
chr8 (608-686)||(6928084-6928163)
chr8 (518-714)||(17698188-17698387)
chr8 (607-731)||(24507429-24507555)
chr8 (504-697)||(5859821-5860017)
chr8 (582-708)||(21416733-21416861)
chr8 (583-731)||(3459453-3459602)
chr8 (579-744)||(15057994-15058161)
chr8 (591-720)||(17927681-17927812)
chr8 (583-745)||(23269204-23269356)
chr8 (582-734)||(13764958-13765112)
chr8 (584-645)||(23497133-23497194)
chr8 (584-647)||(17319602-17319665)
chr8 (586-723)||(24576555-24576694)
chr8 (613-685)||(24070871-24070945)
chr8 (505-562)||(6927984-6928041)
chr8 (685-745)||(23497208-23497268)
chr8 (619-650)||(7220617-7220648)
chr8 (580-635)||(22454199-22454253)
[»] chr2 (22 HSPs)
chr2 (508-749)||(3586317-3586561)
chr2 (471-740)||(45258008-45258280)
chr2 (588-737)||(36267464-36267615)
chr2 (582-730)||(12168945-12169096)
chr2 (507-746)||(12127555-12127797)
chr2 (582-733)||(15825124-15825277)
chr2 (607-749)||(27846512-27846656)
chr2 (585-696)||(24499796-24499909)
chr2 (611-720)||(20120330-20120441)
chr2 (584-748)||(19919036-19919202)
chr2 (597-720)||(45714978-45715103)
chr2 (579-729)||(29710992-29711142)
chr2 (589-730)||(10923140-10923283)
chr2 (588-701)||(24755470-24755585)
chr2 (585-655)||(23257832-23257901)
chr2 (584-680)||(18135895-18135992)
chr2 (627-698)||(18770319-18770392)
chr2 (588-657)||(18772296-18772365)
chr2 (582-654)||(15390553-15390625)
chr2 (586-731)||(19050407-19050554)
chr2 (664-708)||(26713586-26713631)
chr2 (514-562)||(30001628-30001677)
[»] scaffold0360 (1 HSPs)
scaffold0360 (525-680)||(13946-14103)
[»] scaffold0505 (1 HSPs)
scaffold0505 (514-743)||(7845-8077)
[»] scaffold0140 (1 HSPs)
scaffold0140 (584-779)||(6222-6419)
[»] scaffold0291 (2 HSPs)
scaffold0291 (587-697)||(15403-15515)
scaffold0291 (608-699)||(8571-8664)
[»] scaffold0002 (2 HSPs)
scaffold0002 (584-749)||(379670-379837)
scaffold0002 (582-677)||(120979-121075)
[»] scaffold0074 (1 HSPs)
scaffold0074 (606-749)||(35207-35353)
[»] scaffold0054 (1 HSPs)
scaffold0054 (586-697)||(68774-68885)
[»] scaffold0205 (2 HSPs)
scaffold0205 (579-774)||(10880-11077)
scaffold0205 (582-774)||(22815-23009)
[»] scaffold0057 (1 HSPs)
scaffold0057 (583-658)||(73771-73846)
[»] scaffold0294 (1 HSPs)
scaffold0294 (582-680)||(210-310)
[»] scaffold0013 (1 HSPs)
scaffold0013 (586-720)||(4396-4532)
[»] scaffold0092 (1 HSPs)
scaffold0092 (582-749)||(21586-21755)
[»] scaffold0101 (1 HSPs)
scaffold0101 (587-647)||(10704-10764)
[»] scaffold0034 (1 HSPs)
scaffold0034 (587-748)||(18444-18606)
[»] scaffold0174 (2 HSPs)
scaffold0174 (525-627)||(24773-24870)
scaffold0174 (622-731)||(29286-29395)
[»] scaffold0103 (1 HSPs)
scaffold0103 (585-703)||(40796-40916)
[»] scaffold0005 (1 HSPs)
scaffold0005 (604-717)||(215258-215373)
[»] scaffold0263 (1 HSPs)
scaffold0263 (582-727)||(20465-20612)
[»] scaffold0380 (1 HSPs)
scaffold0380 (584-661)||(6830-6907)


Alignment Details
Target: chr3 (Bit Score: 663; Significance: 0; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 663; E-Value: 0
Query Start/End: Original strand, 8 - 782
Target Start/End: Original strand, 9800479 - 9801253
Alignment:
Q  8 gaggatgtcatggtgattgatgccatttctaaaatatgatcgtaattctgaactagtctctatgtgttgataccttctatggtgagcaagtggaaagaat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9800479 gaggatgtcatggtgattgatgccatttctaaaatatgatcgtaattctgaactagtctctatgtgttgataccttctatggtgagcaagtggaa-gaat 9800577  T
Q  108 gaatatatggaatgtaaatcatccttttgtggtaggaccatacattatcttatctcattcaagaaatgatcaataagttattgccacgttgaatagttga 207  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9800578 gaatatatggattgtaaatcatccttttgtggtaggaccatacattatcttatctcattcaagaaatgatcaataagttattgccacgttgaatagttga 9800677  T
Q  208 taatggtggaacttgaagatctttggggactggtgtaggtttatcggattaatttaaccattaatcatataaatannnnnnnataaagacaatcgattat 307  Q
    |||||||||||||||||| |||| |||| || ||||||||||| |||||||||||||||||||||||||||||||       ||||||||||||||||||    
T  9800678 taatggtggaacttgaaggtcttggggggctagtgtaggtttaacggattaatttaaccattaatcatataaatatatttttataaagacaatcgattat 9800777  T
Q  308 aattattggattatttaaaatatgtgacttttatcatatatatcttaaatcttaaaagtcatacaaaatatgtgttctggaccgctcagaagatcaatcc 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |    
T  9800778 aattattggattatttaaaatatgtgacttttatcatatatatcttaaatcttaaaagtcatacaaaagatgtgttctggaccgttcagaagatcaattc 9800877  T
Q  408 taagatgacacgtggtctaactgatgctgccttaaagcttcgcgactgaaggaatgcgccatttttaatgcaccgcaccgcatgcgagcatgcccacgtg 507  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9800878 taagatgacacgtggtctaacttatgctgccttaaagctccgcgactgaaggaatgcgccatttttaatgcaccgcaccgcatgcgagcatgcccacgtg 9800977  T
Q  508 cgagggtcaccctacatgtgtcctctaaccgtccctaatcacacgccgcaaaacccgaatgcgccatttttaatgcgcgcctatataaaggtgacattgc 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  9800978 cgagggtcaccctacatgtgtcctctaaccgtccctaatcacacgccgcaaaacccgaatgcgccatttttaatgcgtgcctatataagggtgacattgc 9801077  T
Q  608 ttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtgttgagtgctaacgtgcttgcagac 706  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |    
T  9801078 ttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctctgttctattactgacttgagtgttgagtgctaacgtgcttgcaggc 9801177  T
Q  707 acatttcgttccactgcgaagactcttcgtcaccgtaccggaattcattgccgtcacatcggagcattttccgcca 782  Q
    || ||||||||||||||||||||| ||||||||||||| |||| ||||||| ||||||||||||||||||||||||    
T  9801178 acctttcgttccactgcgaagacttttcgtcaccgtactggaagtcattgctgtcacatcggagcattttccgcca 9801253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 517 - 698
Target Start/End: Original strand, 17143651 - 17143835
Alignment:
Q  517 ccctacatgtgtcctctaaccgtccctaatcacacgccgcaaaacccgaatgc-gccatttttaatgcgcgcctatataaaggtgacattgcttcaccct 615  Q
    ||||||||||||||||||  |||||||||||||||||||| ||||||||| || |  ||||| ||||| ||| ||||||| |||||  ||| |||||||     
T  17143651 ccctacatgtgtcctctagtcgtccctaatcacacgccgcgaaacccgaaggcagttattttcaatgcacgcttatataagggtgatgttgtttcacccc 17143750  T
Q  616 caaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtgt-tgagtgctaacgtgc 698  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||  ||||||||||||||    
T  17143751 caaggtatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgtcggagtgctaacgtgc 17143835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 471 - 748
Target Start/End: Original strand, 2311690 - 2311970
Alignment:
Q  471 tttaatgcaccgcaccgcatgcgagcatgcccacgtgcgagggtcaccctacatgtgtcctctaaccgtccctaatcacacgccgcaaaacccgaatgcg 570  Q
    |||| ||||||||| | ||| | ||||| ||| ||||||||| |||||||||| |  ||||||| |||||| |||||| ||||  ||||||||| | |||    
T  2311690 tttagtgcaccgcatcacatccaagcatacccccgtgcgaggatcaccctacaagcatcctctatccgtccgtaatcaaacgctacaaaacccggaggcg 2311789  T
Q  571 cc-atttttaatgcgcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctat 668  Q
       ||| |||  ||||| ||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||   ||  |    
T  2311790 gttattcttatcgcgcgtctaaataagggtgacattgcttcaccctcaaggtatgattcacctttcacaacactttctacacattctttctcaaatccct 2311889  T
Q  669 tactgacttgagtgtt-gagtgctaacgtgcttgcagacacatttcgttccactgcgaagactcttcgtcaccgtaccgga 748  Q
    | |||| ||||| ||| ||||||||||||   ||||||||| |||| ||||||  ||||||||||||| ||||||||||||    
T  2311890 tgctgatttgagcgttggagtgctaacgtatctgcagacacctttcattccaccacgaagactcttcgccaccgtaccgga 2311970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 8 - 212
Target Start/End: Original strand, 9802065 - 9802282
Alignment:
Q  8 gaggatgtcatggtgattgatgccatttctaaaatatgatcgtaattctgaactagtctctatgtgttgataccttctatggtgagcaagtggaaagaat 107  Q
    ||||||||||||||||||||||||||||||| ||| |||||   ||||||||||||||||||||   ||||| ||||||| ||| |||||||| ||||||    
T  9802065 gaggatgtcatggtgattgatgccatttctacaatgtgatctggattctgaactagtctctatg---tgatagcttctattgtgggcaagtgg-aagaat 9802160  T
Q  108 gaatatatggaatgtaaatcat------------ccttttgt-----ggtaggaccatacattatcttatctcattcaagaaatgatcaataagttattg 190  Q
    ||||||||||||||||||||||             |||||||     ||||||||||||||||||||||||||||| | || |||| |||||||||| ||    
T  9802161 gaatatatggaatgtaaatcatacaaaaatgggagcttttgtggtagggtaggaccatacattatcttatctcattaatgatatgaccaataagttaatg 9802260  T
Q  191 ccacgttgaatagttgataatg 212  Q
    ||||||||||||||||||||||    
T  9802261 ccacgttgaatagttgataatg 9802282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 523 - 685
Target Start/End: Complemental strand, 30607111 - 30606947
Alignment:
Q  523 atgtgtcctctaaccgtccctaatcacacgccgcaaaacccgaatgc-gccatttttaatgcgcgcctatataaaggtgacattgcttcaccctcaaggt 621  Q
    ||||||||||||||||||||||||||||||| || ||||||| |  | |  ||| |||| |||||||||||||| |||| | || |||||||||||||||    
T  30607111 atgtgtcctctaaccgtccctaatcacacgcggcgaaacccggagacagttattcttaacgcgcgcctatataagggtggccttacttcaccctcaaggt 30607012  T
Q  622 atgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtgttg 685  Q
    || ||||||||||||||||||||||||| |||||||||||  ||| |||||||||||||| ||||    
T  30607011 ataattcacttttcacaacactttctactcactctttctcaattccattactgacttgagcgttg 30606947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 592 - 778
Target Start/End: Original strand, 8122893 - 8123080
Alignment:
Q  592 ataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctcgttctattactgacttgagtgtt-gagtgc 690  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||| | | |||    ||  |||||||||||||| ||| ||||||    
T  8122893 ataagggtgacattgcttcaccctcaaggtatgattcacttttcacaacgctttcgacatagttttttcaatttcattactgacttgagcgttggagtgc 8122992  T
Q  691 taacgtgcttgcagacacatttcgttccactgcgaagactcttcgtcaccgtaccggaattcattgccgtcacatcggagcattttcc 778  Q
    |||||||| |||| |||| |||| ||  || | |||||||| ||||||||||||||||| |||||||| |||||  |||||| |||||    
T  8122993 taacgtgcctgcatacacctttcattttaccgtgaagactcatcgtcaccgtaccggaaatcattgccatcacactggagcactttcc 8123080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 504 - 749
Target Start/End: Original strand, 28723662 - 28723911
Alignment:
Q  504 cgtgcgagggtcaccctacatgtgtcctctaaccg-tccctaatcacacgccgcaaaacccgaatgc-gccatttttaatgcgcgcctatataaaggtga 601  Q
    ||||||||| |||||||||||||||||||||| || ||||| ||||||||  |||||| ||  |  | |  ||| | || |||||||||||||| | |||    
T  28723662 cgtgcgaggatcaccctacatgtgtcctctaatcgctccctgatcacacgttgcaaaatccagagacagttattctcaaagcgcgcctatataaggatga 28723761  T
Q  602 cattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttc-tcgttctattactgacttgagtgtt-gagtgctaacgtgct 699  Q
    ||||| ||||||||| || || |||||||||||||||||| ||||||||||||||||| | |||| |||| ||||||||| ||| || ||| |||||||     
T  28723762 cattgtttcaccctccagatacgattcacttttcacaacattttctacacactctttcttagttccattagtgacttgagcgttggattgccaacgtgcc 28723861  T
Q  700 tgcagacacatttcgttccactgcgaagactcttcgtcaccgtaccggaa 749  Q
    |     ||||||||||||||| |||||||||| | | |||||||||||||    
T  28723862 tattagcacatttcgttccaccgcgaagactcattgccaccgtaccggaa 28723911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 582 - 661
Target Start/End: Complemental strand, 16704525 - 16704446
Alignment:
Q  582 gcgcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc 661  Q
    |||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  16704525 gcgcgcctatataagggtgaacttgcttcaccctcaaggtatgattcacttttcacaacactttctacactctctttctc 16704446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 591 - 676
Target Start/End: Original strand, 28715465 - 28715551
Alignment:
Q  591 tataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgact 676  Q
    ||||| ||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||    
T  28715465 tataagggtgatattgtttcaccctcaaggtatgattcacttttcacaacactttatacacactctttctcagttccattactgact 28715551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 587 - 730
Target Start/End: Original strand, 21342260 - 21342405
Alignment:
Q  587 cctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtgttg 685  Q
    ||||||||| ||| || || |||||||||||| ||||||||||||||||||||||||||||| ||||||||| || |||| |||||||||||||| ||||    
T  21342260 cctatataagggtaaccttacttcaccctcaatgtatgattcacttttcacaacactttctatacactctttatcagttccattactgacttgagcgttg 21342359  T
Q  686 -agtgctaacgtgcttgcagacacatttcgttccactgcgaagact 730  Q
     | || |||||||| |||| | || |||||| |||| | |||||||    
T  21342360 tactgttaacgtgcctgcatatacctttcgtcccaccgtgaagact 21342405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 589 - 764
Target Start/End: Complemental strand, 20622524 - 20622345
Alignment:
Q  589 tatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactt--tctacacactctttctcgttct-attactgacttgagtgt-t 684  Q
    ||||||| |||||  ||||||||||||||||||||||||||||||||||| |||||  |||||||||| ||||||  ||| |||||||||||||| ||      
T  20622524 tatataagggtgaacttgcttcaccctcaaggtatgattcacttttcacaccactttatctacacactatttctctatctcattactgacttgagcgtca 20622425  T
Q  685 gagtgctaacgtgcttgcagacacatttcgttccactgcgaagactcttcgtcaccgtaccggaattcattgccgtcaca 764  Q
     |||| |||| ||| |||||  || ||||||| ||||||||||||||  ||   ||||||||||| || |||||||||||    
T  20622424 aagtgttaacatgcctgcaggaacctttcgtttcactgcgaagactcaacgcggccgtaccggaaatcgttgccgtcaca 20622345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 583 - 731
Target Start/End: Original strand, 431285 - 431435
Alignment:
Q  583 cgcgcctatataaaggtg-acattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgag 680  Q
    ||||||||||||| |||| |||| ||||||||||||||| |  |||||||||||||| ||||||| || ||||||||||| |||| |||| |||||||||    
T  431285 cgcgcctatataagggtggacat-gcttcaccctcaagggacaattcacttttcacagcactttccacgcactctttctcagttccattattgacttgag 431383  T
Q  681 tgttg-agtgctaacgtgcttgcagacacatttcgttccactgcgaagactc 731  Q
     || | ||||||||||||  || || ||| |||| |||||| ||||||||||    
T  431384 cgtcgaagtgctaacgtgtctgtaggcacctttctttccaccgcgaagactc 431435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 587 - 716
Target Start/End: Complemental strand, 12516303 - 12516172
Alignment:
Q  587 cctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtgt-t 684  Q
    |||||||||||||||  |||||||||||||||||||    ||||||||||||||||||  |||||| |||||||| |||| |||||| ||||||| ||      
T  12516303 cctatataaaggtgaacttgcttcaccctcaaggtacatatcacttttcacaacacttattacacaatctttctcagttccattactaacttgagcgtcg 12516204  T
Q  685 gagtgctaacgtgcttgcagacacatttcgtt 716  Q
    |||||||||||||  ||||| ||| |||||||    
T  12516203 gagtgctaacgtgtctgcaggcacctttcgtt 12516172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 627 - 731
Target Start/End: Complemental strand, 1770903 - 1770797
Alignment:
Q  627 tcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtgt-tgagtgctaacgtgcttgcagacacatttcgttccactgcg 724  Q
    ||||||||||||||||||||||||||||||| ||| |||| |||||| ||||||| ||  |||| ||||| ||||||||||||| |||| |||||| ||     
T  1770903 tcacttttcacaacactttctacacactcttcctcagttccattactaacttgagcgtcggagtactaacatgcttgcagacacctttccttccaccgca 1770804  T
Q  725 aagactc 731  Q
    |||||||    
T  1770803 aagactc 1770797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 604 - 731
Target Start/End: Original strand, 17485614 - 17485743
Alignment:
Q  604 ttgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtgtt-gagtgctaacgtgcttg 701  Q
    |||||||||||||||||||  ||||| ||| ||||||| | ||||||||||| |||||  ||| |||||||||||||| ||| | ||||||| ||||       
T  17485614 ttgcttcaccctcaaggtactattcattttacacaacattctctacacactccttctcaattccattactgacttgagcgttggggtgctaatgtgccca 17485713  T
Q  702 cagacacatttcgttccactgcgaagactc 731  Q
    ||||||| ||||||||||| ||||||||||    
T  17485714 cagacacctttcgttccaccgcgaagactc 17485743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 293 - 375
Target Start/End: Original strand, 9802386 - 9802467
Alignment:
Q  293 aagacaatcgattataattattggattatttaaaatatgtgacttttatcatatatatcttaaatcttaaaagtcatacaaaa 375  Q
    ||||||||| || |||| |||||||| ||| ||||||| ||||||||||||||| |||||||||||  |||||||||||||||    
T  9802386 aagacaatcaatgataactattggatcatt-aaaatatttgacttttatcatatctatcttaaatccaaaaagtcatacaaaa 9802467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 582 - 720
Target Start/End: Original strand, 14860067 - 14860207
Alignment:
Q  582 gcgcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgag 680  Q
    |||||||||||||| |||||  |||||||||||||||||||    ||||||||||||||||||  |||| ||| |||||| |||| |||||||| |||||    
T  14860067 gcgcgcctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacaaactgtttctcagttccattactgagttgag 14860166  T
Q  681 tgt-tgagtgctaacgtgcttgcagacacatttcgttccac 720  Q
      |  ||||||||| |||| ||||  ||| |||||||||||    
T  14860167 aatcagagtgctaatgtgcctgcaagcacctttcgttccac 14860207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 662 - 741
Target Start/End: Complemental strand, 21649455 - 21649375
Alignment:
Q  662 gttctattactgacttgagtgttgag-tgctaacgtgcttgcagacacatttcgttccactgcgaagactcttcgtcaccg 741  Q
    |||| |||||||||||||  |||| | ||||||||||||||||| ||| ||||||||||| |||||||||| ||| |||||    
T  21649455 gttccattactgacttgatcgttggggtgctaacgtgcttgcaggcacctttcgttccaccgcgaagactcatcgccaccg 21649375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 607 - 685
Target Start/End: Complemental strand, 13933042 - 13932963
Alignment:
Q  607 cttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtgttg 685  Q
    ||||||||  ||||||||||||||||||||||||| |||| || |||  ||| || |||| |||||||||||||||||||    
T  13933042 cttcacccctaaggtatgattcacttttcacaacattttcaacccacattttatcagttcaattactgacttgagtgttg 13932963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 589 - 749
Target Start/End: Original strand, 12731536 - 12731698
Alignment:
Q  589 tatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtgt-tga 686  Q
    ||||||| |||||  ||||||||||||||||||     ||||||||||||||||||  || |||||||||||| |||| |||| |||| |||| ||  ||    
T  12731536 tatataagggtgaacttgcttcaccctcaaggttcacatcacttttcacaacacttcttatacactctttctcagttccattaatgacgtgagcgtcgga 12731635  T
Q  687 gtgctaacgtgcttgcagacacatttcgttccactgcgaagactcttcgtcaccgtaccggaa 749  Q
    || ||||| || ||| || |||  ||||||||||  ||||||||||||| | |||| ||||||    
T  12731636 gtactaacatggttgtaggcaccattcgttccacctcgaagactcttcgccgccgtgccggaa 12731698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 508 - 552
Target Start/End: Original strand, 6109549 - 6109593
Alignment:
Q  508 cgagggtcaccctacatgtgtcctctaaccgtccctaatcacacg 552  Q
    ||||| |||| ||||||||||| ||||||||||||||||||||||    
T  6109549 cgaggatcacactacatgtgtcatctaaccgtccctaatcacacg 6109593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 614 - 685
Target Start/End: Original strand, 13085073 - 13085145
Alignment:
Q  614 ctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtgttg 685  Q
    |||||||| ||||||||||||||||| |||||||||| | |||||||| |||  |||| ||||||||| ||||    
T  13085073 ctcaaggtttgattcacttttcacaatactttctacatattctttctcagtttcattattgacttgagcgttg 13085145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 670 - 748
Target Start/End: Complemental strand, 1475783 - 1475704
Alignment:
Q  670 actgacttgagtgttg-agtgctaacgtgcttgcagacacatttcgttccactgcgaagactcttcgtcaccgtaccgga 748  Q
    ||||||||||| |||| ||||||| | ||| ||||||||| |||||| |||| | ||||||| |||| ||||||||||||    
T  1475783 actgacttgagcgttggagtgctagcatgcctgcagacacctttcgtcccaccgtgaagactattcgccaccgtaccgga 1475704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 104; Significance: 2e-51; HSPs: 38)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 476 - 780
Target Start/End: Complemental strand, 18147536 - 18147229
Alignment:
Q  476 tgcaccgcaccgcatgcgagcatgcccacgtgcgagggtcaccctacatgtgtcctctaaccgtccctaatcacacgccgcaaaacccgaatgcgcc-at 574  Q
    |||||| |||||||| ||||||  ||| | ||||||| ||||| ||||  |||||||||||||||||||||||||||| |||||||||  | |||   |     
T  18147536 tgcaccacaccgcatacgagcacaccctcatgcgaggatcaccttacacatgtcctctaaccgtccctaatcacacgctgcaaaacccagaggcggttaa 18147437  T
Q  575 ttttaatgcgcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactg 673  Q
    |   ||||||| ||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||| |||| ||    
T  18147436 tcccaatgcgcacctatataagggtgacattgcttcaccctaaaggtatgagtcacttttcacaacactttctacacactctttctcggttccattagtg 18147337  T
Q  674 acttgagtgtt-gagtgctaacgtgcttgcagacacatttcgttccactgcgaagactcttcgtcaccgtaccggaattcattgccgtcacatcggagca 772  Q
    ||||||| ||| ||||| |||||| | | ||| ||| ||||||| ||| | |||||||| |||||| ||||||||||  |||||   ||||| | |||||    
T  18147336 acttgagcgttggagtgttaacgttcctacaggcacctttcgtttcaccgagaagactcatcgtcatcgtaccggaagccattgttatcacaccagagca 18147237  T
Q  773 ttttccgc 780  Q
    ||||||||    
T  18147236 ttttccgc 18147229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 486 - 748
Target Start/End: Complemental strand, 30681212 - 30680947
Alignment:
Q  486 cgcatgcgagcatgcccacgtgcgagggtcaccctacatgtgtcctctaaccgtccctaatcacacgccgcaaaacccgaatgcgcc-atttttaatgcg 584  Q
    ||||| |||||| |||| ||||||||| |||   |||| ||||| | ||||| |  |||||||||||||||||||| || | |||   ||| | || |||    
T  30681212 cgcatacgagcaagcccccgtgcgaggatcattgtacacgtgtcttttaaccttttctaatcacacgccgcaaaactcggaggcggttattctcaacgcg 30681113  T
Q  585 cgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtgt 683  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||| |||||| || |||  |||||||||||||| ||    
T  30681112 cgcctatctaaaggtgacattgcttcatcctcaaggtatgattcacttttcacaatacattctacacgctctttatcagtttcattactgacttgagcgt 30681013  T
Q  684 t-gagtgctaacgtgcttgcagacacatttcgttccactgcgaagactcttcgtcaccgtaccgga 748  Q
    | ||||||||||||| |||||||||| |||||| |||| |||||||||| ||  |||| |||||||    
T  30681012 tggagtgctaacgtgattgcagacacctttcgtcccaccgcgaagactcatctccaccttaccgga 30680947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 507 - 698
Target Start/End: Complemental strand, 19305663 - 19305469
Alignment:
Q  507 gcgagggtcaccctacatgtgtcctctaaccgtccctaatcacacgccgcaaaacccgaatgcgcc-atttttaatgcgcgcctatataaaggtgacatt 605  Q
    |||||| |||||||||| ||||||||||| | ||||||||||||| ||||||||| |||| | |   ||  ||||  ||||||||| ||| |||||| ||    
T  19305663 gcgaggatcaccctacacgtgtcctctaatcttccctaatcacaccccgcaaaactcgaaagagtttatccttaactcgcgcctatttaagggtgacctt 19305564  T
Q  606 gcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtg-ttgagtgctaacgtgc 698  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||| | || |||||||||||||    
T  19305563 gcttcaccctcaaggtatgattcacttttcacaacactttctacacactcttactcagttccattactgacttgagcgtttaagtgctaacgtgc 19305469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 607 - 744
Target Start/End: Original strand, 3404855 - 3404994
Alignment:
Q  607 cttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtgtt-gagtgctaacgtgcttgcag 704  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||| |||||| ||||| ||| |||| | |||    
T  3404855 cttcaccctcaaggtatgattcatttttcacaacactttctacacactctttctcagttccattactgacttaagtgttagagtgttaatgtgcctacag 3404954  T
Q  705 acacatttcgttccactgcgaagactcttcgtcaccgtac 744  Q
    |||||||||||  || ||||||||||| ||  ||||||||    
T  3404955 acacatttcgtctcattgcgaagactcatcaccaccgtac 3404994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 584 - 720
Target Start/End: Original strand, 9291990 - 9292127
Alignment:
Q  584 gcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtg 682  Q
    ||||||||||||||||||  | |||||||||||||||||||||||||||||| | ||||||| |||| ||| |||||| |||| | |||||||||||| |    
T  9291990 gcgcctatataaaggtgagttagcttcaccctcaaggtatgattcacttttc-ccacactttttacatactatttctcagttccaatactgacttgagcg 9292088  T
Q  683 tt-gagtgctaacgtgcttgcagacacatttcgttccac 720  Q
    || | |||||||||||||||||| ||| |||||||||||    
T  9292089 ttagcgtgctaacgtgcttgcaggcacctttcgttccac 9292127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 582 - 730
Target Start/End: Complemental strand, 22572167 - 22572018
Alignment:
Q  582 gcgcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctcgttctattactgacttgagt 681  Q
    ||||||| ||||||||||||  |||||||||||||||| ||||||||||||| |||||||| |||||||||||||||    ||| ||||||||| ||||     
T  22572167 gcgcgccaatataaaggtgaacttgcttcaccctcaagatatgattcactttacacaacaccttctacacactcttttcaattccattactgacatgagc 22572068  T
Q  682 gt-tgagtgctaacgtgcttgcagacacatttcgttccactgcgaagact 730  Q
    ||   ||||||||||||| ||||| ||| ||| ||||||| |||||||||    
T  22572067 gtcatagtgctaacgtgcctgcagccaccttttgttccacggcgaagact 22572018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 506 - 731
Target Start/End: Complemental strand, 11087702 - 11087474
Alignment:
Q  506 tgcgagggtcaccctacatgtgtcctctaaccgtccctaatcacacgccgcaaaacccgaatgc-gccatttttaatgcgcgcctatataaaggtgacat 604  Q
    ||||||| |||||||||| ||||||||||||||||| |||| |||||||||| || ||| |  | |  ||  | || |||| ||||||||| |||||  |    
T  11087702 tgcgaggatcaccctacacgtgtcctctaaccgtccttaattacacgccgcataatccggagacagttatgctcaacgcgcacctatataagggtgaact 11087603  T
Q  605 tgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtgt-tgagtgctaacgtgcttgc 702  Q
    || |||| ||||||||||||||||||||||||||||||  |||||| |||||||||| |||  ||||||||||| || ||   |||||||| |||  |||    
T  11087602 tgtttcatcctcaaggtatgattcacttttcacaacacaatctacatactctttctcagttacattactgacttaagggtcaaagtgctaatgtgtctgc 11087503  T
Q  703 agacacatttcgttccactgcgaagactc 731  Q
    |||||  ||||||||||| ||||||||||    
T  11087502 agacagctttcgttccaccgcgaagactc 11087474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 586 - 731
Target Start/End: Complemental strand, 20148434 - 20148289
Alignment:
Q  586 gcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtg-t 683  Q
    |||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||  ||| |||||| ||||||| | |    
T  20148434 gcctatataagggtgaccttgcttcaccatcaaggtatgattcacttttcacaacactttct--acactctttctcaattccattactaacttgagcgat 20148337  T
Q  684 tgagtgctaacgtgcttgcagacacatttcgttccactgcgaagactc 731  Q
     |||||||||||||  ||||  ||| ||||||||||| || |||||||    
T  20148336 ggagtgctaacgtgtctgcatgcacttttcgttccaccgcaaagactc 20148289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 586 - 731
Target Start/End: Original strand, 22184394 - 22184539
Alignment:
Q  586 gcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtg-t 683  Q
    |||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||  ||| |||||| ||||||| | |    
T  22184394 gcctatataagggtgaccttgcttcaccatcaaggtatgattcacttttcacaacactttct--acactctttctcaattccattactaacttgagcgat 22184491  T
Q  684 tgagtgctaacgtgcttgcagacacatttcgttccactgcgaagactc 731  Q
     |||||||||||||  ||||  ||| ||||||||||| || |||||||    
T  22184492 ggagtgctaacgtgtctgcatgcacttttcgttccaccgcaaagactc 22184539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 587 - 704
Target Start/End: Original strand, 15480314 - 15480433
Alignment:
Q  587 cctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtgtt- 684  Q
    ||||||||| |||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||  |||| ||||||||| |||     
T  15480314 cctatataagggtgacttagcttcactctcaaggtatgattcacttttcacaacactttctacacactttttctcagtttcattattgacttgagagttc 15480413  T
Q  685 gagtgctaacgtgcttgcag 704  Q
    ||||| |||| |||||||||    
T  15480414 gagtgataacttgcttgcag 15480433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 507 - 782
Target Start/End: Complemental strand, 33597060 - 33596782
Alignment:
Q  507 gcgagggtcaccctacatgtgtcctctaaccgtccctaatcacacgccgcaaaacccgaatgcgccattttt----aatgcgcgcctatataaaggtgac 602  Q
    |||||||||| ||||||||||||||||||||| ||||||||| |||||||| || |||   | | || || |    || ||||||||||||||  ||||     
T  33597060 gcgagggtcatcctacatgtgtcctctaaccgcccctaatcatacgccgcataatccg---gtgacaattatgctcaaagcgcgcctatataagagtgaa 33596964  T
Q  603 attgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttc-tcgttctattactgacttgagtgtt-gagtgctaacgtgctt 700  Q
     |||||||| ||||||||||||||||  |||||||||||||||||||||||| |||| | |||  |||||||| ||||| ||| ||||| ||| |||| |    
T  33596963 cttgcttcatcctcaaggtatgattccattttcacaacactttctacacactttttcttagtttcattactgagttgagcgttagagtgttaatgtgcct 33596864  T
Q  701 gcagacacatttcgttccactgcgaagactcttcgtcaccgtaccggaattcattgccgtcacatcggagcattttccgcca 782  Q
    ||||  || ||||||||||| || | || |||||| | ||||| | |||  | |  ||||||||  ||||||||||||||||    
T  33596863 gcaggtacctttcgttccaccgcaaggattcttcgccgccgtatcagaagccttcaccgtcacactggagcattttccgcca 33596782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 606 - 730
Target Start/End: Complemental strand, 34187397 - 34187272
Alignment:
Q  606 gcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtgttga-gtgctaacgtgcttgca 703  Q
    |||||||||||||||||  ||||||||| ||| ||||||| ||||||||||||||| |||| |||||||||||||||||||  |||||||||||  ||||    
T  34187397 gcttcaccctcaaggtacaattcacttt-caccacactttttacacactctttctcagttccattactgacttgagtgttggtgtgctaacgtgtctgca 34187299  T
Q  704 gacacatttcgttccactgcgaagact 730  Q
    ||||| ||||||||||| || ||||||    
T  34187298 gacacctttcgttccaccgcaaagact 34187272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 577 - 679
Target Start/End: Complemental strand, 16131096 - 16130993
Alignment:
Q  577 ttaatgcgcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgac 675  Q
    ||||||||||||||||||| ||| |  ||| ||||||||||||||||||||||| ||||||||||||||||  ||||||||| || |||| |||||||||    
T  16131096 ttaatgcgcgcctatataagggtaaacttgtttcaccctcaaggtatgattcacgtttcacaacactttctgtacactctttatcagttccattactgac 16130997  T
Q  676 ttga 679  Q
    ||||    
T  16130996 ttga 16130993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 583 - 685
Target Start/End: Original strand, 34572963 - 34573066
Alignment:
Q  583 cgcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttc-tcgttctattactgacttgagt 681  Q
    ||||||||||||| |||||| |  |||||||||||| |||||||||||||||||| |||||||||||||||| |||| | ||||||||||| |||||||     
T  34572963 cgcgcctatataagggtgacttaacttcaccctcaatgtatgattcacttttcaccacactttctacacactttttcttagttctattactaacttgagc 34573062  T
Q  682 gttg 685  Q
    ||||    
T  34573063 gttg 34573066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 585 - 678
Target Start/End: Complemental strand, 17380217 - 17380123
Alignment:
Q  585 cgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttg 678  Q
    ||||||||||| |||||| |||| ||| ||| |||||| |||||||||||||||||||||| | ||||||||||||| |||||||||||||||||    
T  17380217 cgcctatataagggtgaccttgcgtcaacctgaaggtaagattcacttttcacaacactttattcacactctttctcagttctattactgacttg 17380123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 582 - 749
Target Start/End: Original strand, 12424282 - 12424452
Alignment:
Q  582 gcgcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgag 680  Q
    |||||||||||||| |||||  |||||||||||| ||||||     |||||||||||||||||| || ||  ||| |||| |||| |||||||||||||     
T  12424282 gcgcgcctatataagggtgaacttgcttcacccttaaggtacacaacacttttcacaacactttttagactttctctctcagttccattactgacttgat 12424381  T
Q  681 tgttg-agtgctaacgtgcttgcagacacatttcgttccactgc-gaagactcttcgtcaccgtaccggaa 749  Q
    ||| | ||||||||||||| ||||| ||| |||||||||||||| ||||||| |||| | ||| |||||||    
T  12424382 tgtcgtagtgctaacgtgcctgcaggcacctttcgttccactgcagaagacttttcgccgccgcaccggaa 12424452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 585 - 749
Target Start/End: Original strand, 31295506 - 31295672
Alignment:
Q  585 cgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtgt 683  Q
    ||||||| ||| |||||  ||||||||||||| |||||    ||||||||||||||||||  ||||||||||||||| |||  |||||||||||||| ||    
T  31295506 cgcctatgtaagggtgaacttgcttcaccctcgaggtacatatcacttttcacaacacttcatacacactctttctcagtttcattactgacttgagcgt 31295605  T
Q  684 tg-agtgctaacgtgcttgcagacacatttcgttccactgcgaagactcttcgtcaccgtaccggaa 749  Q
     | ||||||||| ||| ||||| ||  |||||||||||  ||||||||| ||||| ||| |||||||    
T  31295606 cgaagtgctaacatgcctgcaggcaactttcgttccacctcgaagactcgtcgtcgccgcaccggaa 31295672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 584 - 680
Target Start/End: Original strand, 689828 - 689924
Alignment:
Q  584 gcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgag 680  Q
    |||||||||||| |||||| ||| | || |||||||||| |||||||||||||||||||||| ||||||| ||||||| |||| ||||||||||||||    
T  689828 gcgcctatataagggtgaccttgat-cagcctcaaggtacgattcacttttcacaacactttatacacacactttctcagttccattactgacttgag 689924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 508 - 661
Target Start/End: Original strand, 31423731 - 31423884
Alignment:
Q  508 cgagggtcaccctacatgtgtcctctaaccgtccctaatcacacgccgcaaaacccgaatgcgccatttttaatgcgcgcctatataaaggtgacattgc 607  Q
    ||||| ||||||||||||||||||||||  |||||  |||||||| |||| |||||| |  ||  ||    ||  ||||||||||||| ||||   ||||    
T  31423731 cgaggatcaccctacatgtgtcctctaattgtccccgatcacacgtcgcataacccggacacggtatgcccaacacgcgcctatataagggtgcacttgc 31423830  T
Q  608 ttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc 661  Q
    ||||||||||||  ||||||||||| ||||||||||||||||| ||||||||||    
T  31423831 ttcaccctcaagacatgattcacttctcacaacactttctacatactctttctc 31423884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 599 - 679
Target Start/End: Original strand, 4251029 - 4251110
Alignment:
Q  599 tgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctcgttct-attactgacttga 679  Q
    |||| |||||||||||||||| ||||||| ||||||||||||||| ||| ||||||||||||| || | |||||||||||||    
T  4251029 tgactttgcttcaccctcaagatatgatttacttttcacaacactctctccacactctttctcattttcattactgacttga 4251110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 607 - 659
Target Start/End: Original strand, 12203631 - 12203683
Alignment:
Q  607 cttcaccctcaaggtatgattcacttttcacaacactttctacacactctttc 659  Q
    |||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  12203631 cttcaccctcaaagtatgattcacttttcacaacactttctacatactctttc 12203683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 627 - 741
Target Start/End: Complemental strand, 16343657 - 16343541
Alignment:
Q  627 tcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtgttg-agtgctaacgtgcttgcagacacatttcgttccactgcg 724  Q
    ||||||| ||||||||||  |||||  ||| |||| |||| ||||||||||||||||||| ||||||||||||| ||||| |||  |||| |||||||||    
T  16343657 tcactttccacaacacttcttacactttctctctcagttccattactgacttgagtgttggagtgctaacgtgcctgcaggcacccttcgctccactgcg 16343558  T
Q  725 aagactcttcgtcaccg 741  Q
    ||||||| ||| |||||    
T  16343557 aagactcatcgccaccg 16343541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 606 - 731
Target Start/End: Original strand, 9277293 - 9277419
Alignment:
Q  606 gcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtgtt-gagtgctaacgtgcttgca 703  Q
    ||||||||||||||||||||||||| |||| | ||||||| |||| |||||||||| |||| | |||||||||||| |||  ||||||||||||  ||||    
T  9277293 gcttcaccctcaaggtatgattcac-tttctccacactttttacatactctttctcagttccaatactgacttgagcgttatagtgctaacgtgtctgca 9277391  T
Q  704 gacacatttcgttccactgcgaagactc 731  Q
    |  || ||||||||||| || |||||||    
T  9277392 ggaacctttcgttccaccgcaaagactc 9277419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 582 - 731
Target Start/End: Original strand, 12449551 - 12449702
Alignment:
Q  582 gcgcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgag 680  Q
    |||||||||||||| ||| |  ||| |||||||||||||||    ||||||| ||||||||||  |||||||||||| || | || ||||||||||||||    
T  12449551 gcgcgcctatataagggtaaacttgattcaccctcaaggtacacatcactttccacaacacttcttacacactctttttcagctccattactgacttgag 12449650  T
Q  681 tgtt-gagtgctaacgtgcttgcagacacatttcgttccactgcgaagactc 731  Q
     ||  |||||||||||||| | ||||||| |||||| ||||  |||||||||    
T  12449651 cgtcagagtgctaacgtgcctacagacacctttcgtcccaccacgaagactc 12449702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 582 - 661
Target Start/End: Original strand, 19277044 - 19277123
Alignment:
Q  582 gcgcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc 661  Q
    |||||||||||||| |||||  |||||||||||||||||||    ||||||||||||||||||  |||||||||||||||    
T  19277044 gcgcgcctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctc 19277123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 583 - 720
Target Start/End: Original strand, 27860917 - 27861056
Alignment:
Q  583 cgcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagt 681  Q
    |||||||||| || |||||  ||||||||||||||| |||    ||||||||||||||||||  ||||| |||| | || |||| |||||||||||||||    
T  27860917 cgcgcctataaaagggtgaacttgcttcaccctcaaagtacacatcacttttcacaacacttcttacactctctctttcagttccattactgacttgagt 27861016  T
Q  682 gtt-gagtgctaacgtgcttgcagacacatttcgttccac 720  Q
    ||| |||| ||||| ||| ||||||||| ||| |||||||    
T  27861017 gttagagtactaacatgcctgcagacaccttttgttccac 27861056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 583 - 676
Target Start/End: Complemental strand, 18566779 - 18566685
Alignment:
Q  583 cgcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgact 676  Q
    |||||||||||| ||||||  |||| ||||||||||||||   ||||||||| ||||| ||||||||||| |||||||| |||| ||||||||||    
T  18566779 cgcgcctatatagaggtgaacttgcctcaccctcaaggtagacttcactttttacaacgctttctacacaatctttctcagttccattactgact 18566685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 579 - 703
Target Start/End: Original strand, 19730556 - 19730682
Alignment:
Q  579 aatgcgcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgactt 677  Q
    ||||||| ||||||||| |||||  |||||||||||||||||||    ||||||| ||| ||||||  ||||||||||||||| |||| |||| ||||||    
T  19730556 aatgcgcacctatataagggtgaacttgcttcaccctcaaggtacacatcactttacacgacacttcttacacactctttctcagttccattattgactt 19730655  T
Q  678 gagtgtt-gagtgctaacgtgcttgca 703  Q
    ||| ||| |||||||||| ||| ||||    
T  19730656 gagcgttggagtgctaacatgcctgca 19730682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 583 - 731
Target Start/End: Complemental strand, 34064317 - 34064167
Alignment:
Q  583 cgcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttc-tcgttctattactgacttgagt 681  Q
    ||||||||||||| |||||  |||||||||||||||||||    ||||||||||||||||||  ||||||||||||| | |||  |||||||||||||      
T  34064317 cgcgcctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttcttagtttcattactgacttgaac 34064218  T
Q  682 gt-tgagtgctaacgtgcttgcagacacatttcgttccactgcgaagactc 731  Q
    ||   |||| |||||||| |||| |||| |||||||| || | ||||||||    
T  34064217 gtcatagtgttaacgtgcctgcacacacctttcgttctaccgtgaagactc 34064167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 588 - 680
Target Start/End: Original strand, 10115659 - 10115752
Alignment:
Q  588 ctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgag 680  Q
    |||||||| | |||| | ||||||||||| |||||||||||||||||||||| ||||| ||| | ||||||||| |||  ||||||||||||||    
T  10115659 ctatataaggctgacttagcttcaccctcgaggtatgattcacttttcacaaaactttttactcgctctttctcagtttcattactgacttgag 10115752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 581 - 694
Target Start/End: Complemental strand, 14268556 - 14268440
Alignment:
Q  581 tgcgcgcctatataaaggtgacattgcttcaccc-tcaaggtatgattcacttttcacaacactttctacacactctttc-tcgttctattactgacttg 678  Q
    |||| |||||||||| |||||| | ||||||||| ||| | |||||||||||||||| ||||||||||||||||| | || | |||| |||||||||||     
T  14268556 tgcgtgcctatataagggtgacttagcttcacccctcacgatatgattcacttttcaaaacactttctacacactatgtcttagttccattactgacttc 14268457  T
Q  679 agtgtt-gagtgctaac 694  Q
    || ||| ||||||||||    
T  14268456 agcgttggagtgctaac 14268440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 582 - 680
Target Start/End: Complemental strand, 9403295 - 9403196
Alignment:
Q  582 gcgcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgag 680  Q
    |||| ||||||||| |||||  |||||||||||||||||||    ||||||| ||||||||||  ||||||||||||||| |||| |||| |||||||||    
T  9403295 gcgcacctatataagggtgaacttgcttcaccctcaaggtacacatcactttccacaacacttcttacacactctttctcagttccattattgacttgag 9403196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 621 - 720
Target Start/End: Complemental strand, 14080567 - 14080467
Alignment:
Q  621 tatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtgt-tgagtgctaacgtgcttgcagacacatttcgttcc 718  Q
    |||||||||||||||||||||||| |||||||||||||||| |||| |||||| ||||||| ||  ||||||||| |||| || || ||| |||||| ||    
T  14080567 tatgattcacttttcacaacacttactacacactctttctcagttc-attactaacttgagcgtcagagtgctaatgtgcctgtaggcacctttcgtccc 14080469  T
Q  719 ac 720  Q
    ||    
T  14080468 ac 14080467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 587 - 635
Target Start/End: Complemental strand, 22692210 - 22692162
Alignment:
Q  587 cctatataaaggtgacattgcttcaccctcaaggtatgattcacttttc 635  Q
    |||||||||||||||| | |||||||||||||| |||||||||||||||    
T  22692210 cctatataaaggtgacttagcttcaccctcaagttatgattcacttttc 22692162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 586 - 633
Target Start/End: Original strand, 27772537 - 27772584
Alignment:
Q  586 gcctatataaaggtgacattgcttcaccctcaaggtatgattcacttt 633  Q
    |||||||||| |||||| |||||||||| |||||||||||||||||||    
T  27772537 gcctatataagggtgaccttgcttcaccttcaaggtatgattcacttt 27772584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 627 - 743
Target Start/End: Original strand, 12488009 - 12488127
Alignment:
Q  627 tcacttttcacaacactttctacacactct-ttctcgttctattactgacttgagtgtt-gagtgctaacgtgcttgcagacacatttcgttccactgcg 724  Q
    |||||||||||||||||   |||||||||| || | ||||||||| |||||| || ||| |||||||||||||| ||||  |||  ||||||||||  ||    
T  12488009 tcacttttcacaacactacttacacactctattttagttctattattgacttcagcgttagagtgctaacgtgcatgcatgcacccttcgttccacaacg 12488108  T
Q  725 aagactcttcgtcaccgta 743  Q
    ||||||| ||||| |||||    
T  12488109 aagactcatcgtcgccgta 12488127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 604 - 731
Target Start/End: Original strand, 22497288 - 22497417
Alignment:
Q  604 ttgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtgt-tgagtgctaacgtgcttg 701  Q
    |||||||||||||||||||     |||||||||||||||||| || || |||| | || |||| |||||||||||||| ||  |||||||||||||  ||    
T  22497288 ttgcttcaccctcaaggtacacaacacttttcacaacactttttatactctctctttctgttccattactgacttgagcgtcggagtgctaacgtgtctg 22497387  T
Q  702 cagacacatttcgttccactgcgaagactc 731  Q
    ||  ||| ||||||||||  ||||||||||    
T  22497388 caagcacctttcgttccatcgcgaagactc 22497417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 584 - 622
Target Start/End: Original strand, 13823348 - 13823386
Alignment:
Q  584 gcgcctatataaaggtgacattgcttcaccctcaaggta 622  Q
    ||||||||||||||||||  |||||||||||||||||||    
T  13823348 gcgcctatataaaggtgaacttgcttcaccctcaaggta 13823386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 7e-48; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 520 - 746
Target Start/End: Complemental strand, 5863373 - 5863144
Alignment:
Q  520 tacatgtgtcctctaaccgtccctaatcacacgccgcaaaacccgaatgcgcc-atttttaatgcgcgcctatataaaggtgacattgcttcaccctcaa 618  Q
    |||| |||||||||||||||||||||||||| ||||  ||||||| | |||   ||||  || ||||||||||| || |||||||||||| |||||||||    
T  5863373 tacacgtgtcctctaaccgtccctaatcacatgccgtgaaacccggaggcggttatttccaacgcgcgcctatacaagggtgacattgctccaccctcaa 5863274  T
Q  619 ggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtg-ttgagtgctaacgtgcttgcagacacatttcgtt 716  Q
    |||||||||||||||| |||||| ||||||||||||||||||| |||| |||||||||||||| | |||||||||||||||||||||  || ||||||||    
T  5863273 ggtatgattcactttttacaacattttctacacactctttctcagttcgattactgacttgagcgtttgagtgctaacgtgcttgcacgcaaatttcgtt 5863174  T
Q  717 ccactgcgaagactcttcgtcaccgtaccg 746  Q
    | || | |||||||| |||  |||||||||    
T  5863173 ctaccgtgaagactcatcgctaccgtaccg 5863144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 507 - 703
Target Start/End: Original strand, 26762803 - 26763002
Alignment:
Q  507 gcgagggtcaccctacatgtgtcctctaaccgtccctaatcacacgccgcaaaacccgaatgcgcc-atttttaatgcgcgcctatataaaggtgacatt 605  Q
    |||||| ||||| |||| |||||||||||||||||||||||||||||| ||||||||| | | |   ||    ||  ||||||||||||  |||| | ||    
T  26762803 gcgaggatcaccatacaagtgtcctctaaccgtccctaatcacacgccccaaaacccggaggtggttatcaacaacacgcgcctatatatgggtgtcctt 26762902  T
Q  606 gcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttct-cgttctattactgacttgagtgtt-gagtgctaacgtgcttgca 703  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |  ||||  ||||||||||||| ||| |||||||||||||| ||||    
T  26762903 gcttcaccctcaaggtatgattcacttttcacaacactttctacacactatttatgagttcctttactgacttgagcgttggagtgctaacgtgcctgca 26763002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 582 - 774
Target Start/End: Original strand, 13292091 - 13292285
Alignment:
Q  582 gcgcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgag 680  Q
    |||||||||||||| |||||  |||||||||||||||||||    ||||||||||||||||||  |||||||||||| || |||  ||||||||||||||    
T  13292091 gcgcgcctatataatggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttttcagtttcattactgacttgag 13292190  T
Q  681 tgtt-gagtgctaacgtgcttgcagacacatttcgttccactgcgaagactcttcgtcaccgtaccggaattcattgccgtcacatcggagcatt 774  Q
     ||| |||||||||||| | ||||||||| |||| ||||||  ||||||||| ||| | |||| ||||||    || ||||||||||||||||||    
T  13292191 cgttagagtgctaacgtacctgcagacacctttccttccaccacgaagactcatcgccgccgtgccggaaactgttaccgtcacatcggagcatt 13292285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 580 - 661
Target Start/End: Complemental strand, 29373571 - 29373490
Alignment:
Q  580 atgcgcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc 661  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  29373571 atgcgcgcctatatgagggtgacattgcttcaccctcaaggtatgattcaattttcacaacattttctacacactctttctc 29373490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 588 - 698
Target Start/End: Original strand, 9135335 - 9135447
Alignment:
Q  588 ctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtgtt-g 685  Q
    |||||||| |||||  |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||  ||| |||||||||||||| ||| |    
T  9135335 ctatataagggtgaatttgcttcaccctcaaggtatgattcacttttcacaacagtttttacacactctttctcaattccattactgacttgagcgttag 9135434  T
Q  686 agtgctaacgtgc 698  Q
    |||||||||||||    
T  9135435 agtgctaacgtgc 9135447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 620 - 731
Target Start/End: Complemental strand, 21161326 - 21161214
Alignment:
Q  620 gtatgattcacttttcacaacactttctacacactctttc-tcgttctattactgacttgagtgtt-gagtgctaacgtgcttgcagacacatttcgttc 717  Q
    |||||||||||||||||||||||||||||||||| ||||| | | || |||||||||||||| ||| |||||||||||||| ||||||||| ||||||||    
T  21161326 gtatgattcacttttcacaacactttctacacacactttcttagctccattactgacttgagcgttggagtgctaacgtgcctgcagacac-tttcgttc 21161228  T
Q  718 cactgcgaagactc 731  Q
    ||| ||||||||||    
T  21161227 caccgcgaagactc 21161214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 579 - 778
Target Start/End: Complemental strand, 39879514 - 39879312
Alignment:
Q  579 aatgcgcgcctatataaaggtgacattgcttcaccc-tcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgact 676  Q
    |||| ||| |||||||| |||||||||||||| ||| ||| || ||||||||||||| |||||||||| ||||||||||||||| |||  ||||||||||    
T  39879514 aatgtgcgtctatataagggtgacattgcttcccccctcatggcatgattcactttttacaacactttttacacactctttctcagtttcattactgact 39879415  T
Q  677 tgagtgtt-gagtgctaacgtgcttgcagacacatttcgttccactgcgaagactcttcgtcaccgtaccggaattcattgccgtcacatcggagcattt 775  Q
    |||| |||  |||| |||||||  ||||| ||| |||||||||||  |||||| || || | |||||| |||||  |||  |||||||| ||||||| ||    
T  39879414 tgagcgttaaagtgttaacgtgtctgcaggcacctttcgttccaccacgaagattcatcattaccgtatcggaaaccatcaccgtcacaccggagcactt 39879315  T
Q  776 tcc 778  Q
    |||    
T  39879314 tcc 39879312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 613 - 774
Target Start/End: Original strand, 9867938 - 9868101
Alignment:
Q  613 cctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtgt-tgagtgctaacgtgcttgcagacacat 710  Q
    |||||||||||||||||||||| ||||||||||||||| |||||| ||| |||| |||||||||||||| ||  |||||||||||| | ||||  ||| |    
T  9867938 cctcaaggtatgattcacttttaacaacactttctacaaactcttcctcagttccattactgacttgagcgtcagagtgctaacgttcctgcatgcacct 9868037  T
Q  711 ttcgttccactgcgaagactcttcgtcaccgtaccggaattcattgccgtcacatcggagcatt 774  Q
    ||||| |||| |||||||||| ||| | |||| | ||||  | || ||||||||||| ||||||    
T  9868038 ttcgtcccaccgcgaagactcgtcgccgccgttctggaagccgttaccgtcacatcgaagcatt 9868101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 505 - 643
Target Start/End: Original strand, 43171926 - 43172065
Alignment:
Q  505 gtgcgagggtcaccctacatgtgtcctctaaccgtccctaatcacacgccgcaaaacccgaatgc-gccatttttaatgcgcgcctatataaaggtgaca 603  Q
    |||||||| ||||||| |  |||||||||||| || |||||||| | ||||||||||||| | || |  ||| | ||| ||||||||||||| |||||      
T  43171926 gtgcgaggatcaccctccccgtgtcctctaactgttcctaatcaaatgccgcaaaacccggaggcagttattctcaatccgcgcctatataagggtgaag 43172025  T
Q  604 ttgcttcaccctcaaggtatgattcacttttcacaacact 643  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  43172026 ttgcttcaccctcaatgtatgattcacttttcacaacact 43172065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 607 - 720
Target Start/End: Complemental strand, 7486643 - 7486528
Alignment:
Q  607 cttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtgtt-gagtgctaacgtgcttgcag 704  Q
    ||||||| | |||| ||||||||||||||||||||| ||||||||| |||||||| |||| |||||||| ||||| ||| |||||||||||||| ||||     
T  7486643 cttcacctttaagggatgattcacttttcacaacaccttctacacaatctttctcagttccattactgaattgagcgttggagtgctaacgtgcctgcat 7486544  T
Q  705 acacatttcgttccac 720  Q
     ||| |||| ||||||    
T  7486543 gcacctttcattccac 7486528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 582 - 731
Target Start/End: Original strand, 16987060 - 16987211
Alignment:
Q  582 gcgcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgag 680  Q
    |||||||||||||| |||||  |||||||||| | |||| |    ||||||||||||||||||  |||||||||||||||  ||| ||||||| ||||||    
T  16987060 gcgcgcctatataagggtgaacttgcttcacctttaagggacacatcacttttcacaacacttcttacacactctttctcaattccattactggcttgag 16987159  T
Q  681 tgt-tgagtgctaacgtgcttgcagacacatttcgttccactgcgaagactc 731  Q
    |||  ||||||||||||||  |||  ||| ||||||||||| ||||||||||    
T  16987160 tgtcagagtgctaacgtgcccgcatgcacctttcgttccaccgcgaagactc 16987211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 582 - 737
Target Start/End: Complemental strand, 12644909 - 12644751
Alignment:
Q  582 gcgcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttca-caacactttctacacactctttctc-gttctattactgacttga 679  Q
    |||||||| || || |||||  ||||||||||||||| |||  |||||||||||| |||||||||| ||||||| |||||| |||| ||||||||| |||    
T  12644909 gcgcgcctctacaagggtgaacttgcttcaccctcaacgtacaattcacttttcaccaacactttccacacactttttctcagttccattactgacctga 12644810  T
Q  680 gtgt-tgagtgctaacgtgcttgcagacacatttcgttccactgcgaagactcttcgtc 737  Q
    | ||  |||||||||| ||| ||||  ||| ||||||||||| | |||||||| |||||    
T  12644809 gcgtcggagtgctaacttgcctgcatgcacctttcgttccaccgtgaagactcatcgtc 12644751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 508 - 659
Target Start/End: Complemental strand, 16203920 - 16203768
Alignment:
Q  508 cgagggtcaccctacatgtgtcctctaaccg-tccctaatcacacgccgcaaaacccgaatgcgccatttttaatgc--gcgcctatataaaggtgacat 604  Q
    ||||| |||||||||| |||||||||||||| |||||||||||||||| | |||| || |  ||   || | || ||  || ||||||||| |||||| |    
T  16203920 cgaggatcaccctacacgtgtcctctaaccgctccctaatcacacgccacgaaacacggagacg--gttatcaacgcgagctcctatataagggtgactt 16203823  T
Q  605 tgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttc 659  Q
    | ||||||||| |||||||| ||||||||||| |||||||| |||||||||||||    
T  16203822 ttcttcacccttaaggtatggttcacttttcataacactttatacacactctttc 16203768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 587 - 656
Target Start/End: Complemental strand, 16204409 - 16204340
Alignment:
Q  587 cctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactct 656  Q
    ||||||||| |||||  || ||||||||| |||||||| |||||||||||||||||||| ||||||||||    
T  16204409 cctatataagggtgaattttcttcacccttaaggtatggttcacttttcacaacactttatacacactct 16204340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 582 - 704
Target Start/End: Original strand, 10287564 - 10287688
Alignment:
Q  582 gcgcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgag 680  Q
    |||||||||||||| ||| |  ||| | ||||||||||||||   ||||||||||||||||||  |||||||| |||||| | || ||||||||||||||    
T  10287564 gcgcgcctatataagggtaaacttgttacaccctcaaggtatctctcacttttcacaacacttcttacacactttttctcagatccattactgacttgag 10287663  T
Q  681 tgttga-gtgctaacgtgcttgcag 704  Q
     ||| | |||||||||||| |||||    
T  10287664 cgttaaggtgctaacgtgcctgcag 10287688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 582 - 720
Target Start/End: Original strand, 5925443 - 5925583
Alignment:
Q  582 gcgcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgag 680  Q
    ||||||||| |||| |||||  ||||||||||||||||| |     |||||||||| ||||||  || ||  ||| |||| |||| |||||||||||||     
T  5925443 gcgcgcctacataagggtgaacttgcttcaccctcaaggaacacaacacttttcacgacacttcttagactttctctctcagttccattactgacttgat 5925542  T
Q  681 tgttg-agtgctaacgtgcttgcagacacatttcgttccac 720  Q
     |||| ||||||||||||| ||||||||| |||||||||||    
T  5925543 cgttggagtgctaacgtgcctgcagacacctttcgttccac 5925583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 507 - 554
Target Start/End: Complemental strand, 16204490 - 16204442
Alignment:
Q  507 gcgagggtcaccctacatgtgtcctctaaccg-tccctaatcacacgcc 554  Q
    |||||| |||||||||| |||||||||||||| ||||||||||||||||    
T  16204490 gcgaggatcaccctacacgtgtcctctaaccgctccctaatcacacgcc 16204442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 586 - 645
Target Start/End: Original strand, 12265097 - 12265156
Alignment:
Q  586 gcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacacttt 645  Q
    |||||||||| |||||  |||||| |||||||||||| |  |||||||||||||||||||    
T  12265097 gcctatataagggtgaacttgcttgaccctcaaggtacgcatcacttttcacaacacttt 12265156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 584 - 634
Target Start/End: Complemental strand, 1815562 - 1815512
Alignment:
Q  584 gcgcctatataaaggtgacattgcttcaccctcaaggtatgattcactttt 634  Q
    ||||||||||||| ||||||| |   |||||||||||||||||||||||||    
T  1815562 gcgcctatataaaagtgacatagtgccaccctcaaggtatgattcactttt 1815512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 627 - 698
Target Start/End: Original strand, 5929024 - 5929097
Alignment:
Q  627 tcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtgtt-gagtgctaacgtgc 698  Q
    ||||||||||||||||||  ||||| |||| | || |||| |||||||||||||||||| ||||||||| ||||    
T  5929024 tcacttttcacaacacttcttacactctctctttcagttccattactgacttgagtgttggagtgctaatgtgc 5929097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 2e-45; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 520 - 778
Target Start/End: Original strand, 26994511 - 26994772
Alignment:
Q  520 tacatgtgtcctctaaccgtccctaatcacacgccgcaaaacccgaatgcgcc-atttttaatgcgcgcctatataaaggtgacattgcttcaccctcaa 618  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||||  ||   | | | || |||||||||||||| |||||| ||||||||||| |||    
T  26994511 tacatgtgtcctctaatcgtccctaatcacacgccgcaaaactcgaagacggttactctcaacgcgcgcctatataagggtgaccttgcttcacccccaa 26994610  T
Q  619 ggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtgt-tgagtgctaacgtgcttgcagacacatttcgtt 716  Q
    |||||||||||||||||||||||| ||||| ||||||||||||  ||| |||||||||||||| ||  |||||||||||||  || |||||| ||| ||     
T  26994611 ggtatgattcacttttcacaacaccttctaaacactctttctcaattccattactgacttgagcgtcggagtgctaacgtgtctgaagacaccttttgtc 26994710  T
Q  717 ccactgcgaagactcttcgtcaccgtaccggaattcattgccgtcacatcggagcattttcc 778  Q
    ||||||| | ||||| ||  ||||||||| |||  |||  |||||||||||||||| |||||    
T  26994711 ccactgcaaggactcgtcaccaccgtaccagaaaccatcaccgtcacatcggagcactttcc 26994772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 582 - 735
Target Start/End: Original strand, 27083206 - 27083360
Alignment:
Q  582 gcgcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctcgttctattactgacttgagt 681  Q
    ||||||||||  || |||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||||| |  | | ||||||||||||||    
T  27083206 gcgcgcctatgcaagggtgacttaacttcaccctcaaggtatgattcacttttcacaacactttctacacactctttcacagtttcttactgacttgagt 27083305  T
Q  682 gtt-gagtgctaacgtgcttgcagacacatttcgttccactgcgaagactcttcg 735  Q
    ||| |||||||||||||  |||||||||||||||||| || ||||||||||||||    
T  27083306 gttggagtgctaacgtgtctgcagacacatttcgttctaccgcgaagactcttcg 27083360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 589 - 744
Target Start/End: Complemental strand, 22903209 - 22903052
Alignment:
Q  589 tatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtgttg-a 686  Q
    ||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||| |    
T  22903209 tatataagggtgatattgtttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgttgaa 22903110  T
Q  687 gtgctaacgtgcttgcagacacatttcgttccactgcgaagactcttcgtcaccgtac 744  Q
    |||||||| ||| | |  | || ||||||||||| ||||| |||| ||  ||||||||    
T  22903109 gtgctaacatgcctacgaaaacctttcgttccaccgcgaaaactcatcaccaccgtac 22903052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 582 - 735
Target Start/End: Complemental strand, 25537528 - 25537373
Alignment:
Q  582 gcgcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgag 680  Q
    |||||||||||||| |||||  || |||||||||||||||||   ||||||||||||||||||  |||||| |||||||| |||| |||||   ||||||    
T  25537528 gcgcgcctatataagggtgaactttcttcaccctcaaggtatacatcacttttcacaacacttcatacacaatctttctcagttccattacaatcttgag 25537429  T
Q  681 tgtt-gagtgctaacgtgcttgcagacacatttcgttccactgcgaagactcttcg 735  Q
     ||| |||||||||||||||||||| ||| ||||||||||| ||||||||||||||    
T  25537428 cgttggagtgctaacgtgcttgcaggcacctttcgttccaccgcgaagactcttcg 25537373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 582 - 745
Target Start/End: Complemental strand, 20025406 - 20025241
Alignment:
Q  582 gcgcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgag 680  Q
    |||||||| ||||| |||||| | ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||  ||| |||||   ||    
T  20025406 gcgcgcctgtataagggtgacctagcttcaccctcaaggaatgattcactttacacaacactttctacacactctttctcagtttcattcctgacagtag 20025307  T
Q  681 tgtt-gagtgctaacgtgcttgcagacacatttcgttccactgcgaagactcttcgtcaccgtacc 745  Q
     ||| ||||| |||||||  ||||||||| |||||| |||| |||||||||| | | |||||||||    
T  20025306 cgttggagtgttaacgtgtgtgcagacacctttcgtcccaccgcgaagactcattgacaccgtacc 20025241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 507 - 661
Target Start/End: Original strand, 32418378 - 32418533
Alignment:
Q  507 gcgagggtcaccctacatgtgtcctctaaccgtccctaatcacacgccgcaaaacccgaatgc-gccatttttaatgcgcgcctatataaaggtgacatt 605  Q
    |||||| |||||||||| |||||| |||||| ||||||||||||||||||| |||||| |  | |  |   |||| || || ||||| || |||||  ||    
T  32418378 gcgaggatcaccctacacgtgtcccctaaccatccctaatcacacgccgcataacccggagacagttaagcttaacgcacgtctatacaagggtgaactt 32418477  T
Q  606 gcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc 661  Q
    |||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  32418478 gcttcatcctcaaggtatgattcactcttcacaacactctctacacactctttctc 32418533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 585 - 774
Target Start/End: Complemental strand, 22865881 - 22865690
Alignment:
Q  585 cgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtgt 683  Q
    ||||||||||| |||||  |||||||||||||||||||    ||||||||||||||| ||  |||||||| |||||| |||| |||||| ||||||| ||    
T  22865881 cgcctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacatttcttacacactttttctcagttccattactaacttgagcgt 22865782  T
Q  684 -tgagtgctaacgtgcttgcagacacatttcgttccactgcgaagactcttcgtcaccgtaccggaattcattgccgtcacatcggagcatt 774  Q
       ||||||||||| | ||||  ||| ||||||||||||||||||||   ||| |||||| ||| ||  | || |||||||| |||||||||    
T  22865781 caaagtgctaacgtacctgcatgcacctttcgttccactgcgaagacatgtcgccaccgtgccgaaagccgttaccgtcacaccggagcatt 22865690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 582 - 685
Target Start/End: Complemental strand, 24647411 - 24647307
Alignment:
Q  582 gcgcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgag 680  Q
    |||||||||||||| |||||  |||||||||||| |||||||   ||||||||||||||||||  |||||||||||| || |||| |||||||| |||||    
T  24647411 gcgcgcctatataagggtgaacttgcttcacccttaaggtatacatcacttttcacaacacttcttacacactctttttcagttccattactgaattgag 24647312  T
Q  681 tgttg 685  Q
     ||||    
T  24647311 cgttg 24647307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 588 - 717
Target Start/End: Complemental strand, 8939028 - 8938898
Alignment:
Q  588 ctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtgtt-g 685  Q
    |||||||| |||||| | ||||||||||||| |||||||||||||||| | ||||||| ||||||||||||||| |||| | |||||||| |||  || |    
T  8939028 ctatataacggtgacttagcttcaccctcaatgtatgattcacttttc-ccacactttttacacactctttctcagttccaatactgactagagcattgg 8938930  T
Q  686 agtgctaacgtgcttgcagacacatttcgttc 717  Q
    |||| |||||||| ||||  ||| ||||||||    
T  8938929 agtgttaacgtgcctgcatgcacctttcgttc 8938898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 608 - 651
Target Start/End: Complemental strand, 34493610 - 34493567
Alignment:
Q  608 ttcaccctcaaggtatgattcacttttcacaacactttctacac 651  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  34493610 ttcaccctcaaggtatgattcacttttcacaacactttctacac 34493567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 579 - 680
Target Start/End: Complemental strand, 25333861 - 25333759
Alignment:
Q  579 aatgcgcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttc-tcgttctattactgactt 677  Q
    ||||| ||| |||||||  ||||  ||||||||| ||||| ||||||||||||||| ||||||||||||||||||||| || | |||  |||||||||||    
T  25333861 aatgcacgcttatataagagtgaacttgcttcactctcaaagtatgattcacttttaacaacactttctacacactctctcttagttacattactgactt 25333762  T
Q  678 gag 680  Q
    |||    
T  25333761 gag 25333759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 515 - 557
Target Start/End: Complemental strand, 8939102 - 8939059
Alignment:
Q  515 caccctacatgtgtcctctaaccg-tccctaatcacacgccgca 557  Q
    |||| ||||||||||||||||||| |||||||||||||||||||    
T  8939102 caccgtacatgtgtcctctaaccgctccctaatcacacgccgca 8939059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 631 - 681
Target Start/End: Original strand, 19993182 - 19993233
Alignment:
Q  631 ttttcacaacactttctacacactctttctc-gttctattactgacttgagt 681  Q
    |||||||||||||||| |||| ||||||||| |||| |||||||||||||||    
T  19993182 ttttcacaacactttcaacacgctctttctcagttccattactgacttgagt 19993233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 662 - 720
Target Start/End: Original strand, 26348128 - 26348187
Alignment:
Q  662 gttctattactgacttgagtgttg-agtgctaacgtgcttgcagacacatttcgttccac 720  Q
    |||| |||| ||||||||| |||| ||||||||||||| ||||||||| |||||||||||    
T  26348128 gttccattaatgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccac 26348187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 667 - 720
Target Start/End: Complemental strand, 24546383 - 24546330
Alignment:
Q  667 attactgacttgagtgttgagtgctaacgtgcttgcagacacatttcgttccac 720  Q
    ||||||||||| || || |||| ||||||||| ||||||||| |||||||||||    
T  24546383 attactgactttagcgtggagttctaacgtgcctgcagacacctttcgttccac 24546330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 3e-41; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 577 - 737
Target Start/End: Complemental strand, 12683913 - 12683751
Alignment:
Q  577 ttaatgcgcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgac 675  Q
    |||||||||||||| |||| |||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||  |||||| ||    
T  12683913 ttaatgcgcgcctagataagggtgaacttgcttcacccttaaggtatgattcacttttcacaacactttctacacactctttctcagtttcattactaac 12683814  T
Q  676 ttgagtgtt-gagtgctaacgtgcttgcagacacatttcgttccactgcgaagactcttcgtc 737  Q
    ||||| ||| |||||||||||||| ||||| ||| ||||||||||| || ||||||| |||||    
T  12683813 ttgagcgttggagtgctaacgtgcctgcaggcacctttcgttccaccgcaaagactcatcgtc 12683751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 507 - 703
Target Start/End: Complemental strand, 47253476 - 47253277
Alignment:
Q  507 gcgagggtcaccctacatgtgtcctctaaccg-tccctaatcacacgccgcaaaacccgaatgcgccatttttaatgcgcgcctatataaaggtgacatt 605  Q
    |||||| |||| |||||||||||||||||  | || |||||||||| |||||||||||| |  |     || | |||||||||||||||| |||||| |     
T  47253476 gcgaggatcactctacatgtgtcctctaattgctctctaatcacacaccgcaaaacccggagacagttattatcatgcgcgcctatataagggtgactta 47253377  T
Q  606 gcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtgtt-gagtgctaacgtgcttgca 703  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||| ||| |||||||||| ||| ||||    
T  47253376 gcttcaccctcaaggtatgattcacttttcacaacactttttacacactctttctcagttccattactgacttgagcgttggagtgctaacatgcctgca 47253277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 507 - 656
Target Start/End: Original strand, 2674466 - 2674616
Alignment:
Q  507 gcgagggtcaccctacatgtgtcctctaaccgtccctaatcacacgccgcaaaacccgaatgcgcc-atttttaatgcgcgcctatataaaggtgacatt 605  Q
    |||||| |||||||||| |||||||||||| ||||||||||||||||||||||| ||| |  ||   ||  | || |||||| ||||||| |||||  ||    
T  2674466 gcgaggatcaccctacacgtgtcctctaactgtccctaatcacacgccgcaaaatccggagacggttatgctcaacgcgcgcttatataagggtgaactt 2674565  T
Q  606 gcttcaccctcaaggtatgattcacttttcacaacactttctacacactct 656  Q
     ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2674566 acttcatcctcaaggtatgattcacttttcacaacactttctacacactct 2674616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 582 - 745
Target Start/End: Complemental strand, 19809824 - 19809660
Alignment:
Q  582 gcgcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttc-tcgttctattactgacttgag 680  Q
    |||||||||| ||| |||||| | | |||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||  ||||||||||||||    
T  19809824 gcgcgcctatgtaagggtgacttagtttcaccctcaaggtataattcacttttcacaacactttctacacactctttcttagtttcattactgacttgag 19809725  T
Q  681 tgtt-gagtgctaacgtgcttgcagacacatttcgttccactgcgaagactcttcgtcaccgtacc 745  Q
     ||| |||||||||| ||  |||||  || ||||| || || |||||||||| |||||||||||||    
T  19809724 cgttggagtgctaacatgtctgcaggaacctttcg-tcaaccgcgaagactcatcgtcaccgtacc 19809660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 585 - 677
Target Start/End: Complemental strand, 19643822 - 19643729
Alignment:
Q  585 cgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgactt 677  Q
    ||||||||||| |||||  ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||    
T  19643822 cgcctatataagggtgaacttgtttcaccctcaaggtatgattcacttttcacaagactttctacacactctttctcagttccattactgactt 19643729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 582 - 778
Target Start/End: Complemental strand, 29157225 - 29157027
Alignment:
Q  582 gcgcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgag 680  Q
    |||||||||||||| |||||  || ||||||| |||||||||| |||||||| |||||||||| ||||||||| |||||| |||| |||||| |||||||    
T  29157225 gcgcgcctatataagggtgaacttacttcaccatcaaggtatggttcactttacacaacacttactacacactttttctcagttccattactaacttgag 29157126  T
Q  681 tgtt-gagtgctaacgtgcttgcagacacatttcgttccactgcgaagactcttcgtcaccgtaccggaattcattgccgtcacatcggagcattttcc 778  Q
     ||| |||||| ||||||  ||||  ||| ||||||||||| || | || || ||||| || ||||||||  ||| || |||||| ||||||| |||||    
T  29157125 cgttggagtgcaaacgtgtctgcatgcacctttcgttccaccgcaaggattcatcgtcgccttaccggaaaccatcgctgtcacaccggagcactttcc 29157027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 583 - 730
Target Start/End: Complemental strand, 5518662 - 5518513
Alignment:
Q  583 cgcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagt 681  Q
    ||||||||||||| |||||  ||||||||||||||||||| |  ||||||| ||||||||||  |||||| ||| |||| |||| ||||||||||||||     
T  5518662 cgcgcctatataagggtgaacttgcttcaccctcaaggtacgcatcactttccacaacacttcttacacattctctctcagttcaattactgacttgagc 5518563  T
Q  682 gttg-agtgctaacgtgcttgcagacacatttcgttccactgcgaagact 730  Q
    |||| ||||||||||||  ||||  ||| |||||||||| ||||||||||    
T  5518562 gttgaagtgctaacgtgtctgcactcacctttcgttccattgcgaagact 5518513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 514 - 744
Target Start/End: Complemental strand, 10982056 - 10981825
Alignment:
Q  514 tcaccctacatgtgtcctctaaccg-tccctaatcacacgccgcaaaacccgaatgcgccatttttaatgcgcgcctatataaaggtgacattgcttcac 612  Q
    ||||| ||||||||||||||||||| |||||||||||| |||||| | |||| | |||    || | |  | || |||||||| |||||| | | ||| |    
T  10982056 tcaccatacatgtgtcctctaaccgctccctaatcacaagccgcatatcccggaggcggttattctcacacacgtctatataagggtgacttagtttctc 10981957  T
Q  613 cctcaaggtatgattcacttttcacaacactttctacacactctttctcg-ttctattactgacttgagtgttg-agtgctaacgtgcttgcagacacat 710  Q
    || ||| |||||||||||||||| || |||||| |||||||||||||||| ||| ||||||||||||||||||| ||||| |||||   ||||| ||| |    
T  10981956 cc-caatgtatgattcacttttccca-cactttttacacactctttctcggttccattactgacttgagtgttggagtgccaacgttgctgcaggcacct 10981859  T
Q  711 ttcgttccactgcgaagactcttcgtcaccgtac 744  Q
    ||||| ||||||||||||||| || |||||||||    
T  10981858 ttcgtcccactgcgaagactcatcatcaccgtac 10981825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 586 - 729
Target Start/End: Original strand, 15514533 - 15514678
Alignment:
Q  586 gcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtgtt 684  Q
    |||||||||| |||||  |||||||||||||||||||    ||||||| ||||||||||  |||||||||||| || |||| |||||||||||||| |||    
T  15514533 gcctatataagggtgaacttgcttcaccctcaaggtacacatcactttccacaacacttcttacacactctttttcagttccattactgacttgagcgtt 15514632  T
Q  685 -gagtgctaacgtgcttgcagacacatttcgttccactgcgaagac 729  Q
     |||||||||||||| | ||| |||  |||||||||| ||||||||    
T  15514633 ggagtgctaacgtgcctacaggcacccttcgttccaccgcgaagac 15514678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 583 - 742
Target Start/End: Original strand, 15742122 - 15742283
Alignment:
Q  583 cgcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagt 681  Q
    ||||||||||||| |||||  ||||||||  |||||||||    ||||||||||||||||||  |||||||| |||||| |||| ||||||||||||||     
T  15742122 cgcgcctatataagggtgaatttgcttcagtctcaaggtacacatcacttttcacaacacttcttacacactttttctcagttccattactgacttgagc 15742221  T
Q  682 gt-tgagtgctaacgtgcttgcagacacatttcgttccactgcgaagactcttcgtcaccgt 742  Q
    ||  ||||||||||||||  |||| ||| ||||| |||||  ||||||||| ||||| ||||    
T  15742222 gtaagagtgctaacgtgccagcaggcacctttcgctccaccacgaagactcatcgtcgccgt 15742283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 615 - 657
Target Start/End: Complemental strand, 19818783 - 19818741
Alignment:
Q  615 tcaaggtatgattcacttttcacaacactttctacacactctt 657  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  19818783 tcaaggtataattcacttttcacaacactttctacacactctt 19818741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 585 - 633
Target Start/End: Original strand, 50151775 - 50151823
Alignment:
Q  585 cgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttt 633  Q
    ||||||||||| |||||| |||||||||||||||||||||||| |||||    
T  50151775 cgcctatataagggtgactttgcttcaccctcaaggtatgatttacttt 50151823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 604 - 717
Target Start/End: Original strand, 14602005 - 14602120
Alignment:
Q  604 ttgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtgtt-gagtgctaacgtgcttg 701  Q
    |||||||||||||||||||     |||||||||||||||||  |||||||||| | || |||  |||||||||||||| ||| || ||||||||||| ||    
T  14602005 ttgcttcaccctcaaggtacacaacacttttcacaacacttcttacacactctctttcagtttcattactgacttgagcgttggattgctaacgtgcctg 14602104  T
Q  702 cagacacatttcgttc 717  Q
    ||||||  ||||||||    
T  14602105 cagacaactttcgttc 14602120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 673 - 749
Target Start/End: Complemental strand, 3981981 - 3981904
Alignment:
Q  673 gacttgagtgttg-agtgctaacgtgcttgcagacacatttcgttccactgcgaagactcttcgtcaccgtaccggaa 749  Q
    ||||||||||||| ||||||||||||| ||||  ||| ||||||||||| | |||||||| || |||| |||||||||    
T  3981981 gacttgagtgttggagtgctaacgtgcatgcatgcacctttcgttccaccgtgaagactcatcctcactgtaccggaa 3981904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 585 - 661
Target Start/End: Original strand, 26894693 - 26894768
Alignment:
Q  585 cgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc 661  Q
    |||||||||||  |||||||| ||| |||||||||||| |||||||||||| | ||||||| || |||||| |||||    
T  26894693 cgcctatataagtgtgacatttcttaaccctcaaggtacgattcacttttctc-acactttttaaacactccttctc 26894768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 582 - 633
Target Start/End: Original strand, 3642974 - 3643025
Alignment:
Q  582 gcgcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttt 633  Q
    ||||||||| |||| |||||| ||| |||||||||||| |||||||||||||    
T  3642974 gcgcgcctacataagggtgaccttgattcaccctcaagatatgattcacttt 3643025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 685 - 720
Target Start/End: Complemental strand, 17110716 - 17110681
Alignment:
Q  685 gagtgctaacgtgcttgcagacacatttcgttccac 720  Q
    |||||||||||||||||||| |||||||||||||||    
T  17110716 gagtgctaacgtgcttgcaggcacatttcgttccac 17110681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 509 - 548
Target Start/End: Complemental strand, 29157299 - 29157260
Alignment:
Q  509 gagggtcaccctacatgtgtcctctaaccgtccctaatca 548  Q
    |||| ||| |||||||||||||||||||||||||||||||    
T  29157299 gaggatcatcctacatgtgtcctctaaccgtccctaatca 29157260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 592 - 633
Target Start/End: Complemental strand, 13171178 - 13171137
Alignment:
Q  592 ataaaggtgacattgcttcaccctcaaggtatgattcacttt 633  Q
    |||| |||||||||| |||||||||| |||||||||||||||    
T  13171178 ataagggtgacattgattcaccctcacggtatgattcacttt 13171137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 86; Significance: 1e-40; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 514 - 704
Target Start/End: Original strand, 95709 - 95902
Alignment:
Q  514 tcaccctacatgtgtcctctaaccgtccctaatcacacgccgcaaaacccgaatgc-gccatttttaatgcgcgcctatataaaggtgacattgcttcac 612  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| || | |  |  |||   || ||| |||||||||| |||||| |||||||||    
T  95709 tcactctacatgtgtcctctaaccgtccctaatcacacgccgcaaaactcggaggtagatattccaaacgcgtgcctatataagggtgacgttgcttcac 95808  T
Q  613 cctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtgttg-agtgctaacgtgcttgcag 704  Q
    ||| ||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||| ||||||| |||| |||| |||||||| |||||    
T  95809 cctgaaggtatgattcacttttcacaacactttctacgcactctttctcagttccattactaacttgagcgttgaagtggtaacgtgcctgcag 95902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 4e-40; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 509 - 762
Target Start/End: Complemental strand, 16050591 - 16050335
Alignment:
Q  509 gagggtcaccctacatgtgtcctctaaccgtccctaatcacacgccgcaaaacccg-aatgcgccatttttaatgcgcgcctatataaaggtgacattgc 607  Q
    |||| |||||||||| |||||||||||| |||  ||||||||| |||||||| ||| ||||    |||   ||||||| ||||||||| |||| ||||||    
T  16050591 gaggatcaccctacacgtgtcctctaactgtctttaatcacacaccgcaaaatccggaatgatttattcccaatgcgcacctatataagggtggcattgc 16050492  T
Q  608 ttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtgtt-gagtgctaacgtgcttgcaga 705  Q
    |||| |||||||||||| |||||||||||| ||||||||||||||||||||||| |||| || | ||||||||| ||| |||||||||||||| ||||||    
T  16050491 ttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtgctaacgtgcctgcaga 16050392  T
Q  706 cacatttcgttccactgcgaagactcttcgtcaccgtaccggaattcattgccgtca 762  Q
     || ||||  ||||| |||||||||| ||| |||  ||||||||  ||||| |||||    
T  16050391 tacctttctatccaccgcgaagactcatcgccactataccggaaaccattgtcgtca 16050335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 582 - 720
Target Start/End: Complemental strand, 26977863 - 26977723
Alignment:
Q  582 gcgcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgag 680  Q
    |||||||||||||| ||| | ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||| ||||||||||||||    
T  26977863 gcgcgcctatataagggtcaaattgcttcaccctcaaggtatgattcatttttcacaatactttctacacactctttctcggttccattactgacttgag 26977764  T
Q  681 tgtt-gagtgctaacgtgcttgcagacacatttcgttccac 720  Q
     ||| |||||||||||||| ||||| ||| |||||||||||    
T  26977763 cgttggagtgctaacgtgcctgcaggcacctttcgttccac 26977723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 587 - 746
Target Start/End: Complemental strand, 34273205 - 34273044
Alignment:
Q  587 cctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtgtt- 684  Q
    ||||||||| || |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||  |||||||||||||  ||     
T  34273205 cctatataagggcgacattgcttcaccctcaaggtatgagtcactttacacaacactttctacacactctttctcagttccgttactgacttgagcattg 34273106  T
Q  685 gagtgctaacgtgcttgcagacacatttcgttccactgcgaagactcttcgtcaccgtaccg 746  Q
    ||||||||||||||||||||  || |||||| |||| || ||||||| ||| ||||||||||    
T  34273105 gagtgctaacgtgcttgcaggtacctttcgtcccaccgcaaagactcctcgccaccgtaccg 34273044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 579 - 725
Target Start/End: Complemental strand, 12177512 - 12177364
Alignment:
Q  579 aatgcgcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgactt 677  Q
    ||||||| ||||||||| | |||  |||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||    
T  12177512 aatgcgcacctatataaggttgaacttgcttcctcctcaaggtataattcacttttcacaacactttctacacactctttctcagttccattactgactt 12177413  T
Q  678 gagtgt-tgagtgctaacgtgcttgcagacacatttcgttccactgcga 725  Q
    ||||||  |||||||||||||| || || ||| ||||||||||| ||||    
T  12177412 gagtgtcggagtgctaacgtgcatgtaggcacctttcgttccaccgcga 12177364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 604 - 749
Target Start/End: Complemental strand, 22414876 - 22414729
Alignment:
Q  604 ttgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtgt-tgagtgctaacgtgcttg 701  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| ||| || |||  |||||||||||||| ||  |||||||||||||| ||    
T  22414876 ttgcttcaccctcaagatatgattcacttttcacaacactttctacacactttttttcagtttcattactgacttgagcgtcagagtgctaacgtgcctg 22414777  T
Q  702 cagacacatttcgttccactgcgaagactcttcgtcaccgtaccggaa 749  Q
    | | ||| ||||||||||| || ||||||| |||||||||||| ||||    
T  22414776 cgggcacctttcgttccaccgcaaagactcatcgtcaccgtactggaa 22414729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 584 - 741
Target Start/End: Complemental strand, 16030516 - 16030357
Alignment:
Q  584 gcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgag-t 681  Q
    |||||||||||| |||| | | ||||| ||||||||||||||||||||||||||||||||||||||||||||||  || |||| ||||||||||||||      
T  16030516 gcgcctatataagggtggcttagcttcgccctcaaggtatgattcacttttcacaacactttctacacactcttattcagttccattactgacttgagca 16030417  T
Q  682 gttgagtgctaacgtgcttgcagacacatttcgttccactgcgaagactcttcgtcaccg 741  Q
     |||| || |||||||| ||||||||| |||| |||||| | |||||||| ||| |||||    
T  16030416 tttgactgataacgtgcctgcagacacctttcattccaccgtgaagactcatcgccaccg 16030357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 582 - 731
Target Start/End: Original strand, 33101475 - 33101626
Alignment:
Q  582 gcgcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgag 680  Q
    ||||| ||| ||||||||||||||| |||||||||||| || | ||||||||||||||||||||||||||||| |||||| |||| ||||| ||||||||    
T  33101475 gcgcgtctacataaaggtgacattgtttcaccctcaagttacggttcacttttcacaacactttctacacactttttctcagttccattaccgacttgag 33101574  T
Q  681 tgtt-gagtgctaacgtgcttgcagacacatttcgttccactgcgaagactc 731  Q
     ||| |||||||||||||| ||||  ||| |||| ||| || ||||||||||    
T  33101575 cgttggagtgctaacgtgcctgcatgcacctttcattctacagcgaagactc 33101626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 573 - 698
Target Start/End: Complemental strand, 5671902 - 5671775
Alignment:
Q  573 atttttaatgcgcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattac 671  Q
    ||||| |||||||| ||||||||  ||||| |  ||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  5671902 attttcaatgcgcgtctatataagagtgacttaacttcaccttcaatgtatgattcacttttcacaacactttctacacactctttctcagttccattac 5671803  T
Q  672 tgacttgagtgtt-gagtgctaacgtgc 698  Q
    | ||||||| ||| ||||||||||||||    
T  5671802 taacttgagcgttggagtgctaacgtgc 5671775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 604 - 774
Target Start/End: Complemental strand, 52565681 - 52565508
Alignment:
Q  604 ttgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtgt-tgagtgctaacgtgcttg 701  Q
    |||||||||||||||| ||||||||||||||||||||||||||| | |||||||| || ||||  ||||||||||||| ||  |||||||||||||  ||    
T  52565681 ttgcttcaccctcaagttatgattcacttttcacaacactttctgcgcactctttttcagttcctttactgacttgagcgtcagagtgctaacgtgtctg 52565582  T
Q  702 cagacacatttcgttccactgcgaagactcttcgtcaccgtaccggaattcattgccgtcaca-tcggagcatt 774  Q
    ||| ||| ||||||||||   |||| |||| ||| |||| |||||||| |  || |||||||| ||||||||||    
T  52565581 caggcacctttcgttccatcacgaaaactcatcgccaccataccggaagttgttaccgtcacactcggagcatt 52565508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 514 - 717
Target Start/End: Original strand, 2140847 - 2141049
Alignment:
Q  514 tcaccctacatgtgtcctctaaccgtc-cctaatcacacgccgcaaaacccgaatgcgccatttttaatgcgcgcctatataaaggtgacattgcttcac 612  Q
    ||||| |||| |||||||||||||||  ||||||||||| || ||||||||||| | |    || | | ||||| || ||||| |||||| | |||||||    
T  2140847 tcaccatacacgtgtcctctaaccgtttcctaatcacacaccacaaaacccgaaagtggttattctcacgcgcgtctttataagggtgacttagcttcac 2140946  T
Q  613 cctcaaggtatgattcacttttcacaacactttctacacactctttctcgttctattactgacttgagtgtt-gagtgctaacgtgcttgcagacacatt 711  Q
    |||||||||||| |||||||| |||||||||||||||||| |||||    ||| |||||||||||||| ||| |||||||||  ||| |||| |||| ||    
T  2140947 cctcaaggtatggttcactttccacaacactttctacacattcttt---tttcaattactgacttgagcgttggagtgctaagttgcctgcatacacctt 2141043  T
Q  712 tcgttc 717  Q
    ||||||    
T  2141044 tcgttc 2141049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 590 - 745
Target Start/End: Complemental strand, 18246257 - 18246101
Alignment:
Q  590 atataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctcg-ttctattactgacttgagtgttg-ag 687  Q
    |||||| |||||| |  ||||||||||||||||||| ||||||||| || |||||| || ||||||||||||  ||||| |||| ||||||| |||| ||    
T  18246257 atataagggtgacttatcttcaccctcaaggtatgaatcacttttctca-cactttttatacactctttctcaattctaatactcacttgagcgttggag 18246159  T
Q  688 tgctaacgtgcttgcagacacatttcgttccactgcgaagactcttcgtcaccgtacc 745  Q
    || |||||||||| ||||||| ||||||||||| || ||||||| ||  |||||||||    
T  18246158 tgttaacgtgcttacagacacctttcgttccaccgccaagactcatcaccaccgtacc 18246101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 589 - 719
Target Start/End: Original strand, 23280237 - 23280367
Alignment:
Q  589 tatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtg-ttga 686  Q
    |||||||||||||  |||||||||||||| || || ||||||||||||||||||  | ||||||| ||||||| |||| |||||||||||||| | ||||    
T  23280237 tatataaaggtgaacttgcttcaccctcatggcattattcacttttcacaacac--tatacacacactttctcagttccattactgacttgagagtttga 23280334  T
Q  687 gtgctaacgtgcttgcagacacatttcgttcca 719  Q
    ||| |||| ||  ||||| ||| ||||||||||    
T  23280335 gtgataacatgtctgcaggcacctttcgttcca 23280367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 607 - 745
Target Start/End: Original strand, 5459702 - 5459841
Alignment:
Q  607 cttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctcgttctattactgacttgagtgtt-gagtgctaacgtgcttgcaga 705  Q
    ||||| || ||| |||||||||||||| |||||||||||||||||||||||||||  ||  ||||||  ||||  ||| |||||||||||| | ||||      
T  5459702 cttcatccccaatgtatgattcactttacacaacactttctacacactctttctcagtccgttactgttttgaacgttggagtgctaacgtacctgcatg 5459801  T
Q  706 cacatttcgttccactgcgaagactcttcgtcaccgtacc 745  Q
    ||| |||||| ||||  ||||||||| ||| |||||||||    
T  5459802 cacctttcgtcccaccacgaagactcatcgccaccgtacc 5459841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 582 - 661
Target Start/End: Original strand, 12032221 - 12032299
Alignment:
Q  582 gcgcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc 661  Q
    |||||||||||||| |||||| | | |||||| ||||| ||||||||| ||| |||||||||||||||||||||||||||    
T  12032221 gcgcgcctatataagggtgacttagtttcacc-tcaagttatgattcattttacacaacactttctacacactctttctc 12032299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 579 - 730
Target Start/End: Original strand, 4601452 - 4601605
Alignment:
Q  579 aatgcgcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgactt 677  Q
    ||||||||| ||||||| |||||  ||||||||||||||||| |    |||  ||||||| |||||  |||||| | |||||| |||  |||||||||||    
T  4601452 aatgcgcgcgtatataagggtgaacttgcttcaccctcaagggacacatcaaatttcacagcacttattacacattatttctcagtttcattactgactt 4601551  T
Q  678 gagtgttg-agtgctaacgtgcttgcagacacatttcgttccactgcgaagact 730  Q
    ||| || | ||||||||||||| ||||| ||| ||||||||||| |||||||||    
T  4601552 gagcgtcggagtgctaacgtgcctgcagtcacctttcgttccaccgcgaagact 4601605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 635 - 774
Target Start/End: Original strand, 14255051 - 14255192
Alignment:
Q  635 cacaacactttctacacactctttctc-gttctattactgacttgagtgttg-agtgctaacgtgcttgcagacacatttcgttccactgcgaagactct 732  Q
    ||||||||||  ||||||||||||||| |||  |||| ||||||||| |||| ||||||| ||||||||||| |||  ||||||||||  |||||||||     
T  14255051 cacaacacttcttacacactctttctcagtttcattaatgacttgagcgttggagtgctatcgtgcttgcaggcacccttcgttccaccacgaagactca 14255150  T
Q  733 tcgtcaccgtaccggaattcattgccgtcacatcggagcatt 774  Q
    ||| | |||  ||||||  |||| |||||||| |||||||||    
T  14255151 tcgccgccgcgccggaagccattaccgtcacaccggagcatt 14255192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 584 - 763
Target Start/End: Original strand, 23728790 - 23728970
Alignment:
Q  584 gcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtg 682  Q
    |||||||||||| |||||  ||| |||||||||||||||    ||||||||||||||||||  |||||||||||||||  ||| |||| ||||||||| |    
T  23728790 gcgcctatataagggtgaacttgtttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcatttccattaatgacttgagcg 23728889  T
Q  683 t-tgagtgctaacgtgcttgcagacacatttcgttccactgcgaagactcttcgtcaccgtaccggaattcattgccgtcac 763  Q
    |   | ||||||||||| ||||  ||| ||||||| ||| |||||||||| |||||  |||  ||||| ||||| |||||||    
T  23728890 tcataatgctaacgtgcctgcatccacctttcgtt-caccgcgaagactcatcgtcgtcgtgtcggaagtcattaccgtcac 23728970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 585 - 635
Target Start/End: Complemental strand, 8019068 - 8019018
Alignment:
Q  585 cgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttc 635  Q
    ||||||||||| |||||||| ||||||||| ||||||||||||||||||||    
T  8019068 cgcctatataagggtgacatagcttcacccccaaggtatgattcacttttc 8019018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 620 - 745
Target Start/End: Original strand, 43344450 - 43344575
Alignment:
Q  620 gtatgattcacttttcacaacactttctacacactctttctcgttctattactgacttgagtgtt-gagtgctaacgtgcttgcagacacatttcgttcc 718  Q
    |||||||||||||||| |  |||||| |||||||||||||| |||  | |||||||||||| ||| ||||||||||||   ||||||||| |||| | ||    
T  43344450 gtatgattcacttttcccc-cactttttacacactctttctagtttcaatactgacttgagcgttcgagtgctaacgtttctgcagacacctttcatccc 43344548  T
Q  719 actgcgaagactcttcgtcaccgtacc 745  Q
    || || ||||||| ||| |||||||||    
T  43344549 accgcaaagactcatcgccaccgtacc 43344575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 587 - 720
Target Start/End: Original strand, 1659762 - 1659897
Alignment:
Q  587 cctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtgtt- 684  Q
    ||||||||| |||||  ||||| ||||| |||| |||   ||||||||||||||||||  |||||| |||||||| | || |||| ||||||||| |||     
T  1659762 cctatataagggtgaacttgctccacccacaagatatttctcacttttcacaacacttcttacacattctttctcagatccattattgacttgagcgttg 1659861  T
Q  685 gagtgctaacgtgcttgcagacacatttcgttccac 720  Q
    ||||| |||||||  || |||||| |||||||||||    
T  1659862 gagtgataacgtgtatgtagacacctttcgttccac 1659897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 585 - 749
Target Start/End: Original strand, 21682561 - 21682727
Alignment:
Q  585 cgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactct-ttctcgttctattactgacttgagtgt 683  Q
    ||||||||||| |||||  |||| ||||||||||||||    | ||||||||||| | ||  |||||||||| |||| |||| |||||||||||||| ||    
T  21682561 cgcctatataagggtgaatttgcgtcaccctcaaggtacacattacttttcacaatatttcttacacactctcttctagttccattactgacttgagcgt 21682660  T
Q  684 t-gagtgctaacgtgcttgcagacacatttcgttccactgcgaagactcttcgtcaccgtaccggaa 749  Q
    | |||||| ||||| | |  || ||| ||||||||||| ||  |||||| ||| | |||||||||||    
T  21682661 tggagtgcaaacgtacctataggcacctttcgttccacagcagagactcatcgccgccgtaccggaa 21682727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 510 - 563
Target Start/End: Complemental strand, 26977944 - 26977891
Alignment:
Q  510 agggtcaccctacatgtgtcctctaaccgtccctaatcacacgccgcaaaaccc 563  Q
    |||||||| ||||||||||||| |||||||| |||||||||||| ||| |||||    
T  26977944 agggtcacactacatgtgtcctataaccgtctctaatcacacgctgcataaccc 26977891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 604 - 720
Target Start/End: Complemental strand, 25408197 - 25408079
Alignment:
Q  604 ttgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtgtt-gagtgctaacgtgcttg 701  Q
    ||||||||||||||||| |    ||||||||||||||||||  |||||||||| | || |||  ||||||||||||||  || |||||||||||||  ||    
T  25408197 ttgcttcaccctcaagggacacatcacttttcacaacacttcttacacactctctttcagtttcattactgacttgagcattggagtgctaacgtgtctg 25408098  T
Q  702 cagacacatttcgttccac 720  Q
    ||| ||| |||| ||||||    
T  25408097 caggcacctttcattccac 25408079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 631 - 774
Target Start/End: Original strand, 16299591 - 16299735
Alignment:
Q  631 ttttcacaacactttctacacactctttctc-gttctattactgacttgagtgttg-agtgctaacgtgcttgcagacacatttcgttccactgcgaaga 728  Q
    ||||||||||||||  ||| ||||||||||| |||  |||||| ||||||  || | |||||||| |||| ||||||||| ||||||||||| || ||||    
T  16299591 ttttcacaacacttcttacgcactctttctcagtttcattacttacttgaacgtcggagtgctaatgtgcatgcagacacgtttcgttccaccgc-aaga 16299689  T
Q  729 ctcttcgtcaccgtaccggaattcattgccgtcacatcggagcatt 774  Q
    ||| ||| | ||||| ||||| || || | || ||| |||||||||    
T  16299690 ctcatcgccgccgtatcggaagtcgttacggtaacaccggagcatt 16299735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 1e-37; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 585 - 707
Target Start/End: Complemental strand, 30477761 - 30477637
Alignment:
Q  585 cgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtgt 683  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||   ||||||||||||| ||    
T  30477761 cgcctatataagggtgacattacttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctcagtttcgttactgacttgagcgt 30477662  T
Q  684 t-gagtgctaacgtgcttgcagaca 707  Q
    | |||||||||||||| ||||||||    
T  30477661 tggagtgctaacgtgcatgcagaca 30477637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 519 - 731
Target Start/End: Complemental strand, 18323130 - 18322915
Alignment:
Q  519 ctacatgtgtcctctaaccgtccctaatcacacgccgcaaaacccgaatgc-gccatttttaatgcgcgcctatataaaggtgacattgcttcaccctca 617  Q
    |||| |||||||||||||| |||||||||||||||||| ||||||| | || |  ||| | ||  |  |||||||||| |||||| |||||||| |||||    
T  18323130 ctacgtgtgtcctctaaccatccctaatcacacgccgcgaaacccggaggcagttattctcaactcttgcctatataagggtgaccttgcttcatcctca 18323031  T
Q  618 aggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtgtt-gagtgctaacgtgcttgcagacacatttcgt 715  Q
    | |||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||| ||| ||||| |||| ||  ||||  ||| ||| ||    
T  18323030 atgtatgattcacttttcacaacattttctacacaatctttctcagttctattactgacttgagcgttggagtgttaacatgtctgcatgcaccttttgt 18322931  T
Q  716 tccactgcgaagactc 731  Q
    ||||| ||||||||||    
T  18322930 tccaccgcgaagactc 18322915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 528 - 743
Target Start/End: Complemental strand, 13754936 - 13754718
Alignment:
Q  528 tcctctaaccgtcc-ctaatcacacgccgcaaaacccgaatgcgccatttttaatgcgcgcctatataaaggtgacattgcttcaccctcaaggtatgat 626  Q
    |||||||||||| | ||||||||||||||||||| |||||  ||    || | ||||| ||||||||||  ||||| | ||||||||||||||||| |||    
T  13754936 tcctctaaccgttcactaatcacacgccgcaaaatccgaagacggttattctcatgcgtgcctatataagagtgacttagcttcaccctcaaggtaggat 13754837  T
Q  627 tcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtgttg-agtgctaacgtgcttgcagacacatttcgttccactgcg 724  Q
    ||||||| ||||||||||||||||||||||||||| |||  |||||||||||||| | || |||| ||||||||  |||| ||| |||||| ||| ||||    
T  13754836 tcactttacacaacactttctacacactctttctcagtttcattactgacttgagcgatgtagtgttaacgtgccagcaggcacctttcgtcccattgcg 13754737  T
Q  725 aagactcttcgtcaccgta 743  Q
    ||||||||||  |||||||    
T  13754736 aagactcttcaccaccgta 13754718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 538 - 680
Target Start/End: Original strand, 26916821 - 26916965
Alignment:
Q  538 gtccctaatcacacgccgcaaaacccgaatgcgcc-atttttaatgcgcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttca 636  Q
    ||||||||||||||||||||||||| | | |||   ||| | || |||||||||||||| || ||||||||||||  |||||||||||| ||||||||||    
T  26916821 gtccctaatcacacgccgcaaaacctggaggcggttattctcaacgcgcgcctatataagggcgacattgcttcatgctcaaggtatgactcacttttca 26916920  T
Q  637 caacactttctacacactctttctc-gttctattactgacttgag 680  Q
    |||||||||||||||||||| |||| |||| ||||||||||||||    
T  26916921 caacactttctacacactctctctcagttccattactgacttgag 26916965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 608 - 686
Target Start/End: Original strand, 6928084 - 6928163
Alignment:
Q  608 ttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtgttga 686  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  6928084 ttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagtgttga 6928163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 518 - 714
Target Start/End: Original strand, 17698188 - 17698387
Alignment:
Q  518 cctacatgtgtcctctaaccgtccctaatcacacgccgcaaaacccgaatgcgcc-atttttaatgcgcgcctatataaaggtgacattgcttcaccctc 616  Q
    |||| ||||||||| |||||||||||||||||||||||| |||  ||||  ||   ||  |  | |||||||||||||  |||| | |||||||||||||    
T  17698188 cctatatgtgtcctttaaccgtccctaatcacacgccgctaaattcgaagacggttatgctcgacgcgcgcctatatatgggtggccttgcttcaccctc 17698287  T
Q  617 aaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtgtt-gagtgctaacgtgcttgcagacacatttcg 714  Q
    || |||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||  |||| || ||||||||| |  |||||||| |||||    
T  17698288 aaagtataattcacttttcacaacactttctacacactctttctcggttccattactgacttgcatgttggaatgctaacgtacccgcagacacctttcg 17698387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 607 - 731
Target Start/End: Complemental strand, 24507555 - 24507429
Alignment:
Q  607 cttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtgtt-gagtgctaacgtgcttgcag 704  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||| |||| ||||||||  ||| |||| ||||||||| |||||    
T  24507555 cttcaccctcaaggtatgattcacttttcacaacactttctagacactctttctcatttccattattgacttgatcgttggagtactaacgtgcatgcag 24507456  T
Q  705 acacatttcgttccactgcgaagactc 731  Q
    |||| ||||| ||||| || |||||||    
T  24507455 acacctttcgctccaccgcaaagactc 24507429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 504 - 697
Target Start/End: Complemental strand, 5860017 - 5859821
Alignment:
Q  504 cgtgcgagggtcaccctacatgtgtcctctaaccgtccctaatcacacgccgcaaaacccgaatgcgcc-atttttaatgcgcgcctatataaaggtgac 602  Q
    ||||||||| |||| ||||| ||||| | ||||||||||||||||| |||||||||| ||  | |||   ||||  || |||||||||||||| ||||||    
T  5860017 cgtgcgaggatcactctacacgtgtcatttaaccgtccctaatcactcgccgcaaaatccagaggcggttatttccaacgcgcgcctatataagggtgac 5859918  T
Q  603 attgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttc-tcgttctattactgacttgagtgtt-gagtgctaacgtg 697  Q
     ||||||||  ||||||||| ||||||||| ||| |||||| || ||||||| |||| | |||| |||| ||||||||| ||| |||||||||||||    
T  5859917 cttgcttcaatctcaaggtacgattcacttctcaaaacactctcaacacactatttcttagttccattattgacttgagcgttggagtgctaacgtg 5859821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 582 - 708
Target Start/End: Complemental strand, 21416861 - 21416733
Alignment:
Q  582 gcgcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgag 680  Q
    |||| |||||| || |||||  |||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||| |||  ||||||||||||||    
T  21416861 gcgcccctatacaagggtgaacttgcttcacccttaaggtacgattcatttttcacaacactttctacacactctttctcagtttcattactgacttgag 21416762  T
Q  681 tgt-tgagtgctaacgtgcttgcagacac 708  Q
     ||  ||||||||||| || |||||||||    
T  21416761 cgtcggagtgctaacgagcatgcagacac 21416733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 583 - 731
Target Start/End: Original strand, 3459453 - 3459602
Alignment:
Q  583 cgcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcac-aacactttctacacactctttctc-gttctattactgacttgag 680  Q
    ||||||||||||| |||||  |||||||||| |||||||| |||| ||||||||| |||||||||||||||||||| ||| |||| ||||||||||||||    
T  3459453 cgcgcctatataagggtgaacttgcttcacc-tcaaggtacgatttacttttcaccaacactttctacacactcttgctcagttccattactgacttgag 3459551  T
Q  681 tg-ttgagtgctaacgtgcttgcagacacatttcgttccactgcgaagactc 731  Q
     |   |||||||||||||| ||||| ||| |||||  |||| ||||||||||    
T  3459552 cgccggagtgctaacgtgcctgcaggcacctttcg-cccaccgcgaagactc 3459602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 579 - 744
Target Start/End: Complemental strand, 15058161 - 15057994
Alignment:
Q  579 aatgcgcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgactt 677  Q
    ||||||| | |||||||  ||||| ||| |||||||||||||||||||| | ||||||| |||||||||||||| | ||||||  ||  |||||| ||||    
T  15058161 aatgcgcacttatataagtgtgacgttgtttcaccctcaaggtatgatttatttttcaccacactttctacacattttttctcaatttcattactaactt 15058062  T
Q  678 gagtgttg-agtgctaacgtgcttgcagacacatttcgttccactgcgaagactcttcgtcaccgtac 744  Q
    | | |||| ||||||||||||| ||||  ||| |||||||||||  | ||||||| ||||||||||||    
T  15058061 gtgcgttgtagtgctaacgtgcctgcatgcacctttcgttccaccacaaagactcatcgtcaccgtac 15057994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 591 - 720
Target Start/End: Original strand, 17927681 - 17927812
Alignment:
Q  591 tataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtgtt-gagt 688  Q
    ||||| |||| |||||||||||||| |||||||||||||| ||||| ||||||||||||| ||||  |||| |||| ||||||||||| || ||| ||||    
T  17927681 tataagggtggcattgcttcacccttaaggtatgattcacctttcataacactttctacatactcaatctcagttccattactgacttaagcgttggagt 17927780  T
Q  689 gctaacgtgcttgcagacacatttcgttccac 720  Q
    |||||||||| ||||  ||| |||||| ||||    
T  17927781 gctaacgtgcatgcatgcacctttcgtcccac 17927812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 583 - 745
Target Start/End: Complemental strand, 23269356 - 23269204
Alignment:
Q  583 cgcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagt 681  Q
    ||||||||||||  |||||||||||||||||||||||||| ||||||||||            ||||||||||||| || |||| ||||||||||| |||    
T  23269356 cgcgcctatatatgggtgacattgcttcaccctcaaggtacgattcacttt------------ctacacactctttatcagttccattactgacttaagt 23269269  T
Q  682 gttg-agtgctaacgtgcttgcagacacatttcgttccactgcgaagactcttcgtcaccgtacc 745  Q
    |||| ||||||||| ||| || |||||| ||||||||||| || ||||||| ||| |||||||||    
T  23269268 gttggagtgctaacttgcctgtagacacctttcgttccaccgcaaagactcatcgccaccgtacc 23269204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 582 - 734
Target Start/End: Complemental strand, 13765112 - 13764958
Alignment:
Q  582 gcgcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgag 680  Q
    |||||| ||| ||| |||||| | |||||||| |||||  || ||||||||| ||||||||||||||||||||||||||| |||  |||||| ||||||     
T  13765112 gcgcgcttatttaagggtgacttagcttcaccttcaagacattattcactttacacaacactttctacacactctttctcagtttcattactcacttgaa 13765013  T
Q  681 tgtt-gagtgctaacgtgcttgcagacacatttcgttccactgcgaagactcttc 734  Q
      || ||||  |||||||| ||||||||| ||||||  ||| |||||||||||||    
T  13765012 cattggagtcttaacgtgcctgcagacacctttcgtcacaccgcgaagactcttc 13764958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 584 - 645
Target Start/End: Original strand, 23497133 - 23497194
Alignment:
Q  584 gcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacacttt 645  Q
    |||||||||||| |||||| |||||| ||||||||||||||||||||| |||||||||||||    
T  23497133 gcgcctatataagggtgactttgcttaaccctcaaggtatgattcactattcacaacacttt 23497194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 584 - 647
Target Start/End: Original strand, 17319602 - 17319665
Alignment:
Q  584 gcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttct 647  Q
    ||||||||||||||||||  ||||||||||||| ||| ||||||||||||||||||| ||||||    
T  17319602 gcgcctatataaaggtgaacttgcttcaccctcgaggcatgattcacttttcacaactctttct 17319665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 586 - 723
Target Start/End: Original strand, 24576555 - 24576694
Alignment:
Q  586 gcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactc-tttctcgttctattactgacttgagtgtt 684  Q
    |||||||||| |||||  || ||||||||||||||||    | ||||||||||||||||  ||||||||| ||| | |||| |||||||||||||| ||     
T  24576555 gcctatataagggtgaacttccttcaccctcaaggtacacattacttttcacaacacttcttacacactcatttttagttccattactgacttgagcgtc 24576654  T
Q  685 -gagtgctaacgtgcttgcagacacatttcgttccactgc 723  Q
     ||||| |||||||| ||||| ||| ||||||||||||||    
T  24576655 agagtgttaacgtgcctgcaggcacctttcgttccactgc 24576694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 613 - 685
Target Start/End: Complemental strand, 24070945 - 24070871
Alignment:
Q  613 cctcaaggt-atgattcacttttcacaacactttctacacactctttc-tcgttctattactgacttgagtgttg 685  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||||| | |||| ||||||||||| |||||||    
T  24070945 cctcaaggttatgattcacttctcacaacactttctacacactctttcttagttccattactgacttaagtgttg 24070871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 505 - 562
Target Start/End: Original strand, 6927984 - 6928041
Alignment:
Q  505 gtgcgagggtcaccctacatgtgtcctctaaccgtccctaatcacacgccgcaaaacc 562  Q
    |||||||| |||| ||||| ||||||||| ||||| ||||||||||||| ||||||||    
T  6927984 gtgcgaggatcactctacacgtgtcctcttaccgttcctaatcacacgctgcaaaacc 6928041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 685 - 745
Target Start/End: Original strand, 23497208 - 23497268
Alignment:
Q  685 gagtgctaacgtgcttgcagacacatttcgttccactgcgaagactcttcgtcaccgtacc 745  Q
    |||||||||| ||| |||||| || |||||||||||||| ||||||| ||| |||||||||    
T  23497208 gagtgctaacatgcgtgcagatacctttcgttccactgcaaagactcatcgccaccgtacc 23497268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 619 - 650
Target Start/End: Complemental strand, 7220648 - 7220617
Alignment:
Q  619 ggtatgattcacttttcacaacactttctaca 650  Q
    ||||||||||||||||||||||||||||||||    
T  7220648 ggtatgattcacttttcacaacactttctaca 7220617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 580 - 635
Target Start/End: Original strand, 22454199 - 22454253
Alignment:
Q  580 atgcgcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttc 635  Q
    |||||||||||||||| |||||| |||||||| || ||||| ||||||||||||||    
T  22454199 atgcgcgcctatataagggtgactttgcttca-ccacaaggaatgattcacttttc 22454253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 1e-37; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 508 - 749
Target Start/End: Complemental strand, 3586561 - 3586317
Alignment:
Q  508 cgagggtcaccctacatgtgtcctctaaccgtccctaatcacacgccgcaaaacccgaatgcgcc-atttttaatgcgcgcctatataaaggtgacattg 606  Q
    ||||| ||| ||||||||||||||||||||||||||| |||||||||||| ||||   | |||   ||    || |||||||||||||| |||||  |||    
T  3586561 cgaggatcatcctacatgtgtcctctaaccgtccctattcacacgccgcataaccaagaagcggttatgaccaacgcgcgcctatataagggtgaacttg 3586462  T
Q  607 cttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtgt-tgagtgctaacgtgcttgcag 704  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||| |||||||||||||| ||  |||| |||||||||  |||     
T  3586461 cttcaccctcaaggtatgattcacttttcacaacactttctactcactttttctcagttccattactgacttgagcgtcggagtcctaacgtgccggcat 3586362  T
Q  705 acacatttcgttccactgcgaagactcttcgtcaccgtaccggaa 749  Q
     ||| |||| |||||| || |||||||  |||| |||||||||||    
T  3586361 gcacctttcattccaccgcaaagactcaacgtcgccgtaccggaa 3586317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 471 - 740
Target Start/End: Original strand, 45258008 - 45258280
Alignment:
Q  471 tttaatgcaccgcaccgcatgcgagcatgcccacgtgcgagggtcaccctacatgtgtcctctaaccg-tccctaatcacacgccgcaaaacccgaatgc 569  Q
    |||| ||||||||| | ||| | |||| |||  ||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||| || |  |    
T  45258008 tttagtgcaccgcatcacatccaagcacgcctccgtgcgaggatcaccctgcatgtgtcctctaaccgctccctaatcacacgccgcaaaactcggagac 45258107  T
Q  570 gccatttttaatgcgcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttc-tcgttctat 668  Q
    |    |  | | | |  ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| | |||  ||    
T  45258108 ggttatcgtcacgaggacctatataagggtgactttgcttcaccctcaaggtatgattcacttttcacaacactttcgacacattctttcttagtttcat 45258207  T
Q  669 tactgacttgag-tgttgagtgctaacgtgcttgcagacacatttcgttccactgcgaagactcttcgtcacc 740  Q
    |||| ||||||| | | ||||| |||||||| ||||||||  ||||||||||| |||||||||| ||| ||||    
T  45258208 tacttacttgagctttggagtgttaacgtgcctgcagacatctttcgttccaccgcgaagactcatcgccacc 45258280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 588 - 737
Target Start/End: Complemental strand, 36267615 - 36267464
Alignment:
Q  588 ctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtgtt-g 685  Q
    |||||||| |||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||  |||||||||||||| ||| |    
T  36267615 ctatataagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactctttctcagtttcattactgacttgagcgttgg 36267516  T
Q  686 agtgctaacgtgcttgcagacacatttcgttccactgcgaagactcttcgtc 737  Q
    |||| |||| ||| ||||| ||| |||| ||||||||||||||||| |||||    
T  36267515 agtgttaacatgcatgcaggcacctttcattccactgcgaagactcatcgtc 36267464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 582 - 730
Target Start/End: Complemental strand, 12169096 - 12168945
Alignment:
Q  582 gcgcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttc-tcgttctattactgacttg-a 679  Q
    |||||||||| ||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||| |||||||||||| |    
T  12169096 gcgcgcctatttaagggtggcattgcttcaccctcaaggtataattcacttttcacaacactttctacacactctttcttagttccattactgacttgaa 12168997  T
Q  680 gtgtt-gagtgctaacgtgcttgcagacacatttcgttccactgcgaagact 730  Q
    | ||| ||||| ||| |||| ||||||||| ||||||||||| || ||||||    
T  12168996 gcgttggagtgttaatgtgcctgcagacacctttcgttccaccgcaaagact 12168945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 507 - 746
Target Start/End: Original strand, 12127555 - 12127797
Alignment:
Q  507 gcgagggtcaccctacatgtgtcctctaaccgtccctaatcacacgccgcaaaacccgaatgcgcc-atttttaatgcgcgcctatataaaggtgacatt 605  Q
    |||||| |||| ||||| |||| ||||||||||||||||||||||||  |||||| |||| |||   ||| | || ||| || ||||||| | |||||||    
T  12127555 gcgaggatcactctacacgtgttctctaaccgtccctaatcacacgctacaaaactcgaaggcggatattctcaaagcgtgcatatataaggttgacatt 12127654  T
Q  606 gcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttc-tcgttctattactgacttgagtgtt-gagtgctaacgtgcttgca 703  Q
    ||||||||  ||| |||||||||||||||||||||||||||||||||| | ||| | |||  |||||||||||||| ||| |||||||||||||| ||||    
T  12127655 gcttcaccaccaaagtatgattcacttttcacaacactttctacacacacgttcttagtttcattactgacttgagcgttggagtgctaacgtgcctgca 12127754  T
Q  704 gacacatttcgttccactgcgaagactcttcgtcaccgtaccg 746  Q
    |  || |||||| |||| |||||||| | ||  ||||||||||    
T  12127755 ggtacctttcgtcccaccgcgaagacccatcaccaccgtaccg 12127797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 582 - 733
Target Start/End: Complemental strand, 15825277 - 15825124
Alignment:
Q  582 gcgcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgag 680  Q
    ||||||||||| || |||||  |||||||||||||||||||    | ||||||||||||||||||||||||||||||||| |||| ||||| ||||||||    
T  15825277 gcgcgcctatacaagggtgaacttgcttcaccctcaaggtacacatgacttttcacaacactttctacacactctttctcagttccattaccgacttgag 15825178  T
Q  681 tgt-tgagtgctaacgtgcttgcagacacatttcgttccactgcgaagactctt 733  Q
     ||   ||||||||||||| |||||||||||||||||||||  | |||||||||    
T  15825177 cgtcaaagtgctaacgtgcctgcagacacatttcgttccaccacaaagactctt 15825124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 607 - 749
Target Start/End: Original strand, 27846512 - 27846656
Alignment:
Q  607 cttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtgtt-gagtgctaacgtgcttgcag 704  Q
    ||||||||||||||||  ||||||||| |||||||||||||||| ||| |||||| |||| |||||||||||||  ||| |||||||||||||| |||||    
T  27846512 cttcaccctcaaggtacaattcactttacacaacactttctacaaactgtttctcagttccattactgacttgatcgttggagtgctaacgtgcctgcag 27846611  T
Q  705 acacatttcgttccactgcgaagactcttcgtcaccgtaccggaa 749  Q
     ||| |||||| | ||||||||||||| | | |||||||||||||    
T  27846612 gcacttttcgtccaactgcgaagactcattgccaccgtaccggaa 27846656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 585 - 696
Target Start/End: Complemental strand, 24499909 - 24499796
Alignment:
Q  585 cgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtgt 683  Q
    ||||| ||||| |||||  |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||  ||| |||||||||||||| ||    
T  24499909 cgcctttataagggtgaacttgcttcacccttaaggtatgattcacttttcacaacattttctacacactctttctcatttccattactgacttgagcgt 24499810  T
Q  684 t-gagtgctaacgt 696  Q
    | ||||||||||||    
T  24499809 tggagtgctaacgt 24499796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 611 - 720
Target Start/End: Complemental strand, 20120441 - 20120330
Alignment:
Q  611 accctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtgt-tgagtgctaacgtgcttgcagacac 708  Q
    |||||||||||||||||||||| ||||| ||||||| |||||||||||||| |||  |||||||||||||| ||  |||||||||||||| |||||||||    
T  20120441 accctcaaggtatgattcacttatcacaccactttccacacactctttctcagtttcattactgacttgagagtcggagtgctaacgtgcctgcagacac 20120342  T
Q  709 atttcgttccac 720  Q
     |||||||||||    
T  20120341 ctttcgttccac 20120330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 584 - 748
Target Start/End: Original strand, 19919036 - 19919202
Alignment:
Q  584 gcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtg 682  Q
    ||||||||||||  |||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||  ||| |||| ||||||  | |    
T  19919036 gcgcctatataagagtgatattgcttcatcctcaaggtatgattcacttttcacaacactttctacatactctttctcatttccattattgactttggcg 19919135  T
Q  683 tt-gagtgctaacgtgcttgcagacacatttcgttccactgcgaagactcttcgtcaccgtaccgga 748  Q
    || |||| |||| || | ||||| ||| |||||||||||  ||||||||  ||| |||| |||||||    
T  19919136 ttagagttctaatgttcctgcaggcacctttcgttccaccacgaagactgatcgccaccataccgga 19919202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 597 - 720
Target Start/End: Complemental strand, 45715103 - 45714978
Alignment:
Q  597 ggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtgtt-gagtgctaac 694  Q
    |||||| | |||||||| ||||||||||||||| ||||||| ||||||| ||||||||||||||| |||  |||||||||||||| ||| ||||||||||    
T  45715103 ggtgacttagcttcaccttcaaggtatgattcaattttcaccacactttttacacactctttctcagtttcattactgacttgagcgttggagtgctaac 45715004  T
Q  695 gtgcttgcagacacatttcgttccac 720  Q
    |||| ||||  ||| |||||||||||    
T  45715003 gtgcctgcatgcacctttcgttccac 45714978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 579 - 729
Target Start/End: Complemental strand, 29711142 - 29710992
Alignment:
Q  579 aatgcgcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctcgttctattactgacttg 678  Q
    ||||||||||||||||| |||||  |||||||||||||||||||    ||||||||||||||||||  ||||| |||||||   ||| |||| |||||||    
T  29711142 aatgcgcgcctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcgtacactctctttc-aattccattagtgacttg 29711044  T
Q  679 agtgtt-gagtgctaacgtgcttgcagacacatttcgttccactgcgaagac 729  Q
    || ||| |||||||||||||| |||| |||| ||| ||||||| ||||||||    
T  29711043 agcgttggagtgctaacgtgcatgcatacaccttttgttccaccgcgaagac 29710992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 589 - 730
Target Start/End: Original strand, 10923140 - 10923283
Alignment:
Q  589 tatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttct-cgttctattactgacttgagtgt-tga 686  Q
    ||||||| |||||  ||||||||||||||||| |   ||||||||||||| ||||||||||||||||||| |  |||| || ||||||||||||||  ||    
T  10923140 tatataagggtgaacttgcttcaccctcaaggcacacttcacttttcacagcactttctacacactctttataagttccataactgacttgagtgtcgga 10923239  T
Q  687 gtgctaacgtgcttgcagacacatttcgttccactgcgaagact 730  Q
    ||| |||||||| | || |||| ||||||||||| |||||||||    
T  10923240 gtgataacgtgcctacatacacctttcgttccaccgcgaagact 10923283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 588 - 701
Target Start/End: Complemental strand, 24755585 - 24755470
Alignment:
Q  588 ctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttc-tcgttctattactgacttgagtgtt-g 685  Q
    ||||||||| ||||| | |||||| | | |||||| |||||||||||||||||| |||||||||||| ||||   |||| || ||||||||||| ||| |    
T  24755585 ctatataaaagtgacttagcttcatcttaaaggtacgattcacttttcacaacaatttctacacactttttcagagttccatcactgacttgagggttgg 24755486  T
Q  686 agtgctaacgtgcttg 701  Q
    ||| ||||||||||||    
T  24755485 agtactaacgtgcttg 24755470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 585 - 655
Target Start/End: Complemental strand, 23257901 - 23257832
Alignment:
Q  585 cgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactc 655  Q
    ||||||||||| |||||| ||| |||||||||||||||  ||||||||||| | |||||||||||||||||    
T  23257901 cgcctatataagggtgaccttgattcaccctcaaggtacaattcacttttc-ccacactttctacacactc 23257832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 584 - 680
Target Start/End: Complemental strand, 18135992 - 18135895
Alignment:
Q  584 gcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgag 680  Q
    |||||||||||| |||||  |||||||||| || ||||||   |||||||| |||||||||  ||||||||||||||| |||| |||||| |||||||    
T  18135992 gcgcctatataagggtgaacttgcttcaccttctaggtatacatcacttttgacaacacttcttacacactctttctcagttccattactaacttgag 18135895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 627 - 698
Target Start/End: Complemental strand, 18770392 - 18770319
Alignment:
Q  627 tcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtgt-tgagtgctaacgtgc 698  Q
    |||||||||||||||||||||||||||||||||||  ||  |||||||||||||| ||  ||||||||||||||    
T  18770392 tcacttttcacaacactttctacacactctttctcaatttcattactgacttgagcgtcagagtgctaacgtgc 18770319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 588 - 657
Target Start/End: Complemental strand, 18772365 - 18772296
Alignment:
Q  588 ctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctt 657  Q
    |||||||| |||||  ||||||||||||||||||     |||||||||||||||||||||||||||||||    
T  18772365 ctatataagggtgaacttgcttcaccctcaaggtgcacgtcacttttcacaacactttctacacactctt 18772296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 582 - 654
Target Start/End: Original strand, 15390553 - 15390625
Alignment:
Q  582 gcgcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacact 654  Q
    |||||||||||||| |||||  |||||||||||||||||||    ||||||||||||||||||  ||||||||    
T  15390553 gcgcgcctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacact 15390625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 586 - 731
Target Start/End: Original strand, 19050407 - 19050554
Alignment:
Q  586 gcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttc-tcgttctattactgacttgagtgt- 683  Q
    |||||||||| |||||  || |||||| |||| ||||    ||||||||||||||||||  ||||| ||||||| | ||||||||||||||||||| ||     
T  19050407 gcctatataagggtgaacttacttcactctcagggtacacatcacttttcacaacacttcttacactctctttcttagttctattactgacttgagcgtc 19050506  T
Q  684 tgagtgctaacgtgcttgcagacacatttcgttccactgcgaagactc 731  Q
     ||||||||||| |  |||| | || ||||||||||| ||||| ||||    
T  19050507 agagtgctaacgggtctgcaaatacctttcgttccaccgcgaacactc 19050554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 664 - 708
Target Start/End: Original strand, 26713586 - 26713631
Alignment:
Q  664 tctattactgacttgagtgttg-agtgctaacgtgcttgcagacac 708  Q
    |||| ||||||||||||||||| ||||||||||||| |||||||||    
T  26713586 tctaatactgacttgagtgttggagtgctaacgtgcctgcagacac 26713631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 514 - 562
Target Start/End: Original strand, 30001628 - 30001677
Alignment:
Q  514 tcaccctacatgtgtcctctaaccg-tccctaatcacacgccgcaaaacc 562  Q
    |||| |||||||||||||||||||| |||||||| | |||||||||||||    
T  30001628 tcactctacatgtgtcctctaaccgttccctaattatacgccgcaaaacc 30001677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 70; Significance: 4e-31; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 525 - 680
Target Start/End: Complemental strand, 14103 - 13946
Alignment:
Q  525 gtgtcctctaaccgtccctaatcacacgccgcaaaacccgaatgcgcc-atttttaatgcgcgcctatataaaggtgacattgcttcaccctcaaggtat 623  Q
    |||||||||||| |||||||||||||| |||||||||| | | |||   |||   ||||| | ||||||||| |||||  ||||||||||||||||||||    
T  14103 gtgtcctctaacggtccctaatcacacaccgcaaaacctggaggcggttattcccaatgcacacctatataagggtgatcttgcttcaccctcaaggtat 14004  T
Q  624 gattcacttttcacaacactttctacacactctttctc-gttctattactgacttgag 680  Q
    ||||||||| |||||||||||||||||||||||||||| |||  ||||||||||||||    
T  14003 gattcacttctcacaacactttctacacactctttctcagtttcattactgacttgag 13946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 66; Significance: 9e-29; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 514 - 743
Target Start/End: Complemental strand, 8077 - 7845
Alignment:
Q  514 tcaccctacatgtgtcctctaaccgtccctaatcacacgccgcaaaacccgaatgcgccattttt---aatgcgcgcctatataaaggtgacattgcttc 610  Q
    |||| ||||| |||||||||||||||  ||||| ||| || |||||||||| |||||  ||| ||   ||||||   |||||||| |||||||||| |||    
T  8077 tcacgctacacgtgtcctctaaccgttgctaatgacatgctgcaaaacccggatgcg--attattcccaatgcggctctatataatggtgacattgtttc 7980  T
Q  611 accctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtgtt-gagtgctaacgtgcttgcagacac 708  Q
    || |||||  |||||||||||||||||||||||||||||||||||||||||  ||  |||||||| ||||| ||| |||||||||||||| | ||  |||    
T  7979 acactcaaattatgattcacttttcacaacactttctacacactctttctcaattgcattactgatttgagcgttagagtgctaacgtgcctacatgcac 7880  T
Q  709 atttcgttccactgcgaagactcttcgtcaccgta 743  Q
     |||| |||||| | |||||||| ||| |||||||    
T  7879 ctttccttccaccgtgaagactcatcgccaccgta 7845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 66; Significance: 9e-29; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 584 - 779
Target Start/End: Complemental strand, 6419 - 6222
Alignment:
Q  584 gcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtg 682  Q
    |||||||||||| | |||  ||||||||| ||||||||| || |||||||||||||||||||||||||||| |||||| |||| ||||||||||||||      
T  6419 gcgcctatataaggatgaacttgcttcacgctcaaggtacgactcacttttcacaacactttctacacactatttctcagttccattactgacttgagct 6320  T
Q  683 ttg-agtgctaacgtgcttgcagacacatttcgttccactgcgaagactcttcgtcaccgtaccggaattcattgccgtcacatcggagcattttccg 779  Q
    | | ||||||||||||| |||| |||| ||| ||||||||||  ||||||  |||  |||||||| || || || |||||||| | ||||||| ||||    
T  6319 tcgaagtgctaacgtgcctgcaaacaccttttgttccactgcagagactcaacgttgccgtaccgaaagtcgttaccgtcacaccagagcattatccg 6222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 61; Significance: 9e-26; HSPs: 2)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 587 - 697
Target Start/End: Original strand, 15403 - 15515
Alignment:
Q  587 cctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtgt-t 684  Q
    ||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||| |||||||||| ||| ||      
T  15403 cctatataagggtgaacttgcttcaccctcaaggtatgattcacttttcacaacactttctagatactctttctcagttccattactgactggagcgtcg 15502  T
Q  685 gagtgctaacgtg 697  Q
    |||||||||||||    
T  15503 gagtgctaacgtg 15515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 608 - 699
Target Start/End: Original strand, 8571 - 8664
Alignment:
Q  608 ttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtgttg-agtgctaacgtgct 699  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||| || |||  |||||||||||||| || | ||||||||||||||    
T  8571 ttcacccttaaggtatgattcacttttcacaacactttctacacactgtttttcagtttcattactgacttgagcgtcgaagtgctaacgtgct 8664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 584 - 749
Target Start/End: Complemental strand, 379837 - 379670
Alignment:
Q  584 gcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtg 682  Q
    |||||||||||  |||||  |||||||||||||||||||    ||||||||||||||||||  ||||||||||||||| |||| ||||||||||| ||||    
T  379837 gcgcctatatacgggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccattactgacttcagtg 379738  T
Q  683 ttga-gtgctaacgtgcttgcagacacatttcgttccactgcgaagactcttcgtcaccgtaccggaa 749  Q
    |  | |||||||||||| |  |  ||| ||||||||||| |||||||||| ||||| |||||||||||    
T  379737 tcaaagtgctaacgtgcctagatgcacctttcgttccaccgcgaagactcatcgtcgccgtaccggaa 379670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 582 - 677
Target Start/End: Original strand, 120979 - 121075
Alignment:
Q  582 gcgcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgactt 677  Q
    |||||||||||||| |||||  |||||||||||||||||||    ||||||||||||||||||| ||||||||||||||| |||| |||||||||||    
T  120979 gcgcgcctatataagggtgaatttgcttcaccctcaaggtacacatcacttttcacaacactttatacacactctttctcagttccattactgactt 121075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 606 - 749
Target Start/End: Complemental strand, 35353 - 35207
Alignment:
Q  606 gcttcaccctcaaggtatgattcactttt-cacaacactttctacacactctttctc-gttctattactgacttgagtgtt-gagtgctaacgtgcttgc 702  Q
    ||||| ||||||| | ||||||||||||| |||||||||||| |||||||||||||| ||||  ||||||||||||||||  |||||||||||||| |||    
T  35353 gcttccccctcaaaggatgattcactttttcacaacactttccacacactctttctcagttccgttactgacttgagtgtcagagtgctaacgtgcctgc 35254  T
Q  703 agacacatttcgttccactgcgaagactcttcgtcaccgtaccggaa 749  Q
    |  ||||||||||| |||| |||||||||  || | |||||||||||    
T  35253 aagcacatttcgttgcactacgaagactcaacgccgccgtaccggaa 35207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 586 - 697
Target Start/End: Original strand, 68774 - 68885
Alignment:
Q  586 gcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtgtt 684  Q
    |||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||  | |||||||||| |||| |||||| ||||||| |||    
T  68774 gcctatataagggtgaccttgcttctccctcaaggtatgattcacttttcacaacactttct--atactctttctcagttccattactaacttgagcgtt 68871  T
Q  685 -gagtgctaacgtg 697  Q
     |||||||||||||    
T  68872 ggagtgctaacgtg 68885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 58; Significance: 5e-24; HSPs: 2)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 579 - 774
Target Start/End: Original strand, 10880 - 11077
Alignment:
Q  579 aatgcgcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgactt 677  Q
    |||||||| ||||||||||||||  ||| |||||||||||||||    ||||||||||||||||||  |||||||||| | || |||| |||| ||||||    
T  10880 aatgcgcgtctatataaaggtgaacttgtttcaccctcaaggtacacatcacttttcacaacacttcttacacactctctttcagttccattattgactt 10979  T
Q  678 gagtgtt-gagtgctaacgtgcttgcagacacatttcgttccactgcgaagactcttcgtcaccgtaccggaattcattgccgtcacatcggagcatt 774  Q
    ||| ||| |||||||||||||| |||| |||| ||| ||||||| ||  ||| || ||| | ||||||||||| || || ||| | ||||||||||||    
T  10980 gagcgttggagtgctaacgtgcctgcatacaccttttgttccaccgcagagattcatcgccgccgtaccggaagtcgttaccgactcatcggagcatt 11077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 582 - 774
Target Start/End: Complemental strand, 23009 - 22815
Alignment:
Q  582 gcgcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgag 680  Q
    |||| |||| |||| |||||  |||||||||||||||||||    ||||||||||||||||||  |||||||  |||||| |||| ||||||||||||||    
T  23009 gcgcacctacataagggtgaacttgcttcaccctcaaggtacacgtcacttttcacaacacttcttacacacgatttctcagttccattactgacttgag 22910  T
Q  681 tgtt-gagtgctaacgtgcttgcagacacatttcgttccactgcgaagactcttcgtcaccgtaccggaattcattgccgtcacatcggagcatt 774  Q
     ||  ||||||||||||||  |||| ||| |||||| ||||||||||||| | ||| |   |||||| || |  || ||||||||||||||||||    
T  22909 cgtcagagtgctaacgtgcccgcaggcacctttcgtcccactgcgaagacccatcgccgttgtaccgaaagtttttaccgtcacatcggagcatt 22815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 583 - 658
Target Start/End: Original strand, 73771 - 73846
Alignment:
Q  583 cgcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactcttt 658  Q
    ||||||||||||  |||||  |||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||    
T  73771 cgcgcctatatattggtgaacttgcttcaccctgaaggtatgatttacttttcacaacactttctacgcactcttt 73846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 582 - 680
Target Start/End: Original strand, 210 - 310
Alignment:
Q  582 gcgcgcctatataaaggtgacattgcttcaccctcaaggtatgat-tcacttttcacaacactttctacacactctttctc-gttctattactgacttga 679  Q
    ||||||||| |||| |||||  |||||||||||||||||||   | ||||||||||||||||||  ||||||||||||||| |||| |||||||||||||    
T  210 gcgcgcctagataagggtgaacttgcttcaccctcaaggtacattctcacttttcacaacacttcttacacactctttctcagttccattactgacttga 309  T
Q  680 g 680  Q
    |    
T  310 g 310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 586 - 720
Target Start/End: Original strand, 4396 - 4532
Alignment:
Q  586 gcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtgtt 684  Q
    |||||||||| |||||  |||||||||||||||||||    ||| |||||| |||||||  ||||| |||| | || |||  |||| ||||||||| |||    
T  4396 gcctatataagggtgaacttgcttcaccctcaaggtacacatcatttttcataacacttcttacactctctctttcagtttcattagtgacttgagcgtt 4495  T
Q  685 g-agtgctaacgtgcttgcagacacatttcgttccac 720  Q
    | ||||||||||||||||||||||| |||||||||||    
T  4496 ggagtgctaacgtgcttgcagacacctttcgttccac 4532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 582 - 749
Target Start/End: Original strand, 21586 - 21755
Alignment:
Q  582 gcgcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgag 680  Q
    ||||| |||| ||| |||||  |||||||||||||||||||    ||||||| ||||||||||  || ||||||| | || |||  | ||||||||||||    
T  21586 gcgcgtctatgtaagggtgaatttgcttcaccctcaaggtacacatcactttccacaacacttcttaaacactctctttcagtttcaatactgacttgag 21685  T
Q  681 tgttg-agtgctaacgtgcttgcagacacatttcgttccactgcgaagactcttcgtcaccgtaccggaa 749  Q
    ||||| |||||||||||||  |||| |||| |||||||||||||  |||||| ||| |  ||||||||||    
T  21686 tgttggagtgctaacgtgcccgcaggcacacttcgttccactgcagagactcatcgccgtcgtaccggaa 21755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 587 - 647
Target Start/End: Original strand, 10704 - 10764
Alignment:
Q  587 cctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttct 647  Q
    |||||||||||||||  ||||||||||||| ||| ||||||||||||||||||| ||||||    
T  10704 cctatataaaggtgaacttgcttcaccctcgaggcatgattcacttttcacaactctttct 10764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 587 - 748
Target Start/End: Original strand, 18444 - 18606
Alignment:
Q  587 cctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctcgttctat-tactgacttgagtgttg 685  Q
    ||||||||| |||||| | |||||| ||  ||||||||||||| ||||  | ||||||| ||||||||| ||||  |||  | |||||||||||||||||    
T  18444 cctatataagggtgacttagcttcaacccgaaggtatgattcatttttt-ctacactttgtacacactccttcttattccctatactgacttgagtgttg 18542  T
Q  686 -agtgctaacgtgcttgcagacacatttcgttccactgcgaagactcttcgtcaccgtaccgga 748  Q
     |||||||| |||  |||||  |||||||||| ||| | |||||||| ||| ||||||||||||    
T  18543 gagtgctaaagtgtctgcaggaacatttcgtttcaccgtgaagactcatcgccaccgtaccgga 18606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 525 - 627
Target Start/End: Original strand, 24773 - 24870
Alignment:
Q  525 gtgtcctctaaccgtccctaatcacacgccgcaaaacccgaatgcgccatttttaatgcgcgcctatataaaggtgacattgcttcaccctcaaggtatg 624  Q
    ||||||||||||| ||||||||||||| |||  ||||||||||     |||   || |||||||||||||| | ||||||||||||| ||||||||||||    
T  24773 gtgtcctctaaccatccctaatcacacaccgtgaaacccgaat-----attcccaacgcgcgcctatataaggttgacattgcttcaacctcaaggtatg 24867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 622 - 731
Target Start/End: Original strand, 29286 - 29395
Alignment:
Q  622 atgattcacttttcacaacactttctacacactctttctcgttct-attactgacttgagtgttg-agtgctaacgtgcttgcagacacatttcgttcca 719  Q
    ||||||||||||||||||||||||||||||  |||| ||  || | |||||||||||||| |||| ||||||||| ||  | ||  ||| ||||||||||    
T  29286 atgattcacttttcacaacactttctacac--tcttccttattttcattactgacttgagcgttggagtgctaacatgactccatgcacctttcgttcca 29383  T
Q  720 ctgcgaagactc 731  Q
    | ||||||||||    
T  29384 ccgcgaagactc 29395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 585 - 703
Target Start/End: Complemental strand, 40916 - 40796
Alignment:
Q  585 cgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtgt 683  Q
    |||||||| || |||||  |||||||||||||||||||    |||||||||| ||||||| |||||| |||| | || |||| || ||||||||||| ||    
T  40916 cgcctataaaagggtgaacttgcttcaccctcaaggtacacatcacttttcataacacttcctacactctctctttcagttccatcactgacttgagcgt 40817  T
Q  684 t-gagtgctaacgtgcttgca 703  Q
    | |||||||||||||| ||||    
T  40816 tggagtgctaacgtgcctgca 40796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 604 - 717
Target Start/End: Complemental strand, 215373 - 215258
Alignment:
Q  604 ttgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgagtgtt-gagtgctaacgtgcttg 701  Q
    |||||||||||||||||||     |||||||||||||||||  |||||||||| | || |||  |||||||||||||| ||| || ||||||||||| ||    
T  215373 ttgcttcaccctcaaggtacacaacacttttcacaacacttcttacacactctctttcagtttcattactgacttgagcgttggattgctaacgtgcctg 215274  T
Q  702 cagacacatttcgttc 717  Q
    ||||||  ||||||||    
T  215273 cagacaactttcgttc 215258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 582 - 727
Target Start/End: Original strand, 20465 - 20612
Alignment:
Q  582 gcgcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc-gttctattactgacttgag 680  Q
    |||||||||||||  |||||  ||  ||||||| |||||||    |||||||||| |||| ||||||||||||||||||| ||||  ||| |||||||||    
T  20465 gcgcgcctatatatgggtgaatttatttcacccacaaggtacacatcacttttcataacattttctacacactctttctcagttcctttagtgacttgag 20564  T
Q  681 tgt-tgagtgctaacgtgcttgcagacacatttcgttccactgcgaag 727  Q
     ||  |||||||||| || ||| |  ||| ||||||||||| ||||||    
T  20565 cgtcagagtgctaacatgtttgtaagcacctttcgttccaccgcgaag 20612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 584 - 661
Target Start/End: Original strand, 6830 - 6907
Alignment:
Q  584 gcgcctatataaaggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc 661  Q
    ||||||||| || |||||  ||| |||||||||||||||    ||||||||||||||||||  ||||||||| |||||    
T  6830 gcgcctatacaagggtgaacttgtttcaccctcaaggtacacatcacttttcacaacacttcttacacactcgttctc 6907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University