View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5222-Insertion-3 (Length: 429)
Name: NF5222-Insertion-3
Description: NF5222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5222-Insertion-3 |
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Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 5 - 366
Target Start/End: Original strand, 43338072 - 43338433
Alignment:
| Q |
5 |
acaacaataaccaatcaaattagcaagtcgaggatgacgcaatttgccaacaccagaagcttcttcaacaaactgttttggatccggccaagcagctttc |
104 |
Q |
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| T |
43338072 |
acaacaataaccaatcaaattagcaagtcgaggatgacgcaatttgccaacaccagaagcttcttcaacaaactgttttggatccggccaagcagcttta |
43338171 |
T |
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| Q |
105 |
ccgaacttcttcacagcaatccaacgtttctgattctgtaaccttcctttgtaaaccaaattaggtgccttttcaccgctctcagaaacaatatattctg |
204 |
Q |
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| T |
43338172 |
ccgaacttcttcacagcaatccaacgtttctgattctgtaaccttcctttgtaaaccaaattaggtgccttttcaccgctctcagaaacaatatattctg |
43338271 |
T |
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| Q |
205 |
agctgaaattattggtagctgctttgaggtctgaaagtgaaaactctgaaaaagtgaaagttgaaggatctggtgatgatgattctttattgtcggtttc |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43338272 |
agctgaaattattggtagctgctttgaggtctgaaagtgaaaactctgaaaaagtgaaagttgaaggatctggtgatgatgattctttattgtcggtttc |
43338371 |
T |
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| Q |
305 |
agtagtttgtgtttgattattaagaagattgttgctactacggaggtgttgaagctgatagg |
366 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
43338372 |
agtagtttgtgtttgattattcagaagattgttgctactacggaggtgttgaagctgatagg |
43338433 |
T |
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