View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5222-Insertion-4 (Length: 392)
Name: NF5222-Insertion-4
Description: NF5222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5222-Insertion-4 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-137; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 97 - 356
Target Start/End: Original strand, 36992654 - 36992913
Alignment:
| Q |
97 |
tatcgtcatttagcacactgaaatcatgtttttcccttctagcttattgactttctatgcttaaacacttcaaaaccaatgtccaatacacacttatgtc |
196 |
Q |
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| T |
36992654 |
tatcgtcatttagcacactgaaatcatgtttttccctcctagcttattgtctttctatgcttaaacacttcaaaaccaatgtccaatacacacttatgtc |
36992753 |
T |
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| Q |
197 |
gacattttacgacattgtatagtctaataaaataaataacaagccatatgaacggaaacaaattccatctttgttgctgtcagtatgtgcatattataat |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36992754 |
gacattttacgacattgtatagtctaataaaataaataacaagccatatgaacggaaacaaattccatctttgttgctgtcagtatgtgcatattataat |
36992853 |
T |
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| Q |
297 |
gtaacatggaaatatcagattaaatattcaatcacaattttgaaaagctacaaattcaac |
356 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
36992854 |
gtaacatggaaatatcagattaaatattcaatcacaattttgaaaacctacaaattcaac |
36992913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 97 - 356
Target Start/End: Original strand, 37018094 - 37018353
Alignment:
| Q |
97 |
tatcgtcatttagcacactgaaatcatgtttttcccttctagcttattgactttctatgcttaaacacttcaaaaccaatgtccaatacacacttatgtc |
196 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37018094 |
tatcgtcatttagcacactgaaatcatgtttttccctcctagcttattgtctttctatgcttaaacacttcaaaaccaatgtccaatacacacttatgtc |
37018193 |
T |
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| Q |
197 |
gacattttacgacattgtatagtctaataaaataaataacaagccatatgaacggaaacaaattccatctttgttgctgtcagtatgtgcatattataat |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37018194 |
gacattttacgacattgtatagtctaataaaataaataacaagccatatgaacggaaacaaattccatctttgttgctgtcagtatgtgcatattataat |
37018293 |
T |
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| Q |
297 |
gtaacatggaaatatcagattaaatattcaatcacaattttgaaaagctacaaattcaac |
356 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
37018294 |
gtaacatggaaatatcagattaaatattcaatcacaattttgaaaacctacaaattcaac |
37018353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 72
Target Start/End: Original strand, 36992599 - 36992629
Alignment:
| Q |
42 |
cataataagactttattgagctgtacatttt |
72 |
Q |
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| T |
36992599 |
cataataagactttattgagctgtacatttt |
36992629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 72
Target Start/End: Original strand, 37018039 - 37018069
Alignment:
| Q |
42 |
cataataagactttattgagctgtacatttt |
72 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
37018039 |
cataataagactttattgagctgtacatttt |
37018069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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