View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5222-Insertion-5 (Length: 370)

Name: NF5222-Insertion-5
Description: NF5222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5222-Insertion-5
NF5222-Insertion-5
[»] chr2 (5 HSPs)
chr2 (40-369)||(30626601-30626930)
chr2 (40-176)||(30663554-30663690)
chr2 (40-176)||(30672234-30672370)
chr2 (214-369)||(30663701-30663856)
chr2 (214-369)||(30672381-30672536)
[»] chr5 (8 HSPs)
chr5 (40-368)||(35371058-35371387)
chr5 (53-368)||(35411230-35411545)
chr5 (53-368)||(35386584-35386899)
chr5 (53-222)||(35755415-35755584)
chr5 (53-263)||(35367436-35367646)
chr5 (53-276)||(35425984-35426207)
chr5 (90-276)||(35377062-35377248)
chr5 (271-339)||(23935955-23936023)
[»] chr1 (2 HSPs)
chr1 (53-368)||(10414980-10415295)
chr1 (53-274)||(10419960-10420181)
[»] chr7 (2 HSPs)
chr7 (89-370)||(29622532-29622813)
chr7 (309-370)||(25829752-25829816)
[»] chr3 (1 HSPs)
chr3 (89-368)||(1154282-1154561)
[»] chr8 (3 HSPs)
chr8 (105-238)||(15294354-15294487)
chr8 (105-238)||(15474723-15474856)
chr8 (124-276)||(13564891-13565043)


Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 40 - 369
Target Start/End: Original strand, 30626601 - 30626930
Alignment:
Q  40 cctaaactgttgatgttgttgtttgaaaagagtatggagcgggtggccaagtatcacctcatggcgatatctacagctacgggattcttctattagaaat 139  Q
    ||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  30626601 cctaaactgttgatgttattgtttgtgaagagtatggagcgggtggccaagtatcacctcatggcgatatctacagctacgggattcttctcttagaaat 30626700  T
Q  140 gctcactggaaagagaccaacaaatagcatgttttctgaaagtctaagtctacatgcattctgtaagatgaaaattccagaaggaatcctcgagatagtc 239  Q
    |||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||| |||||| | ||||||||     
T  30626701 gctcactggaaaaagaccaacaaatagcatgttttctggaagtctcagtctacatgcattctgtaagatgaaagttccagatggaatctttgagatagta 30626800  T
Q  240 gattcacatttgctcgtgccatttgctgaagatcaaaaagggattgtggaagacaagatttggagttgtttggtgatgtttgccgcaattggagttgcat 339  Q
    ||||||||||||||  ||||||||||||||||| | | ||||||||||||| |||||||| ||| ||| || |||||||||||   ||||||||||||||    
T  30626801 gattcacatttgcttttgccatttgctgaagatgagacagggattgtggaaaacaagattaggaattgcttagtgatgtttgctataattggagttgcat 30626900  T
Q  340 gttctgaagagtttcctgctcatcgaatgc 369  Q
    |||| |||||||||||  || |||||||||    
T  30626901 gttcagaagagtttccatctaatcgaatgc 30626930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 40 - 176
Target Start/End: Original strand, 30663554 - 30663690
Alignment:
Q  40 cctaaactgttgatgttgttgtttgaaaagagtatggagcgggtggccaagtatcacctcatggcgatatctacagctacgggattcttctattagaaat 139  Q
    ||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  30663554 cctaaactgttgatgttattgtttgtgaagagtatggagcgggtggccaagtatcacctcatggtgatatctacagctacggaattcttctattagaaat 30663653  T
Q  140 gctcactggaaagagaccaacaaatagcatgttttct 176  Q
    |||||||||||||||||||||||||||||||| ||||    
T  30663654 gctcactggaaagagaccaacaaatagcatgtcttct 30663690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 40 - 176
Target Start/End: Original strand, 30672234 - 30672370
Alignment:
Q  40 cctaaactgttgatgttgttgtttgaaaagagtatggagcgggtggccaagtatcacctcatggcgatatctacagctacgggattcttctattagaaat 139  Q
    ||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  30672234 cctaaactgttgatgttattgtttgtgaagagtatggagcgggtggccaagtatcacctcatggtgatatctacagctacggaattcttctattagaaat 30672333  T
Q  140 gctcactggaaagagaccaacaaatagcatgttttct 176  Q
    |||||||||||||||||||||||||||||||| ||||    
T  30672334 gctcactggaaagagaccaacaaatagcatgtcttct 30672370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 214 - 369
Target Start/End: Original strand, 30663701 - 30663856
Alignment:
Q  214 ttccagaaggaatcctcgagatagtcgattcacatttgctcgtgccatttgctgaagatcaaaaagggattgtggaagacaagatttggagttgtttggt 313  Q
    ||||||| |||||| | |||||||| ||||||||||||||  ||||||||||||||||| | | ||||||||||||| |||||||| ||| ||| || ||    
T  30663701 ttccagatggaatctttgagatagtagattcacatttgcttttgccatttgctgaagatgagacagggattgtggaaaacaagattaggaattgcttagt 30663800  T
Q  314 gatgtttgccgcaattggagttgcatgttctgaagagtttcctgctcatcgaatgc 369  Q
    |||||||||   ||||||||||||||||||||||||||||||  || |||||||||    
T  30663801 gatgtttgctataattggagttgcatgttctgaagagtttccatcttatcgaatgc 30663856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 214 - 369
Target Start/End: Original strand, 30672381 - 30672536
Alignment:
Q  214 ttccagaaggaatcctcgagatagtcgattcacatttgctcgtgccatttgctgaagatcaaaaagggattgtggaagacaagatttggagttgtttggt 313  Q
    ||||||| |||||| | |||||||| ||||||||||||||  ||||||||||||||||| | | ||||||||||||| |||||||| ||| ||| || ||    
T  30672381 ttccagatggaatctttgagatagtagattcacatttgcttttgccatttgctgaagatgagacagggattgtggaaaacaagattaggaattgcttagt 30672480  T
Q  314 gatgtttgccgcaattggagttgcatgttctgaagagtttcctgctcatcgaatgc 369  Q
    |||||||||   ||||||||||||||||||||||||||||||  || |||||||||    
T  30672481 gatgtttgctataattggagttgcatgttctgaagagtttccatcttatcgaatgc 30672536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 182; Significance: 3e-98; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 40 - 368
Target Start/End: Original strand, 35371058 - 35371387
Alignment:
Q  40 cctaaactgttgatgttgttgtttgaaaa-gagtatggagcgggtggccaagtatcacctcatggcgatatctacagctacgggattcttctattagaaa 138  Q
    ||||||||||||||||||||||||||||| ||||| ||  | ||||  | ||||||||| ||||| |||||||| ||||  ||||||||||| ||||| |    
T  35371058 cctaaactgttgatgttgttgtttgaaaaagagtacgggacaggtgttccagtatcaccacatggagatatctatagctttgggattcttctgttagaga 35371157  T
Q  139 tgctcactggaaagagaccaacaaatagcatgttttctgaaagtctaagtctacatgcattctgtaagatgaaaattccagaaggaatcctcgagatagt 238  Q
    ||||||| ||||||||||||||| ||| |||||||||||| ||||||||||| |||| |||||| || ||||||||||||||||||||||| ||||||||    
T  35371158 tgctcaccggaaagagaccaacagataacatgttttctgagagtctaagtctgcatgaattctgcaaaatgaaaattccagaaggaatccttgagatagt 35371257  T
Q  239 cgattcacatttgctcgtgccatttgctgaagatcaaaaagggattgtggaagacaagatttggagttgtttggtgatgtttgccgcaattggagttgca 338  Q
     ||||||||||||||  | ||||||||||||||| | | ||||||||||||| |||||||| ||| |||||||||||||||||| |||||||||||||||    
T  35371258 agattcacatttgcttttaccatttgctgaagatgatacagggattgtggaaaacaagattaggaattgtttggtgatgtttgctgcaattggagttgca 35371357  T
Q  339 tgttctgaagagtttcctgctcatcgaatg 368  Q
    ||||||||||||| ||||||||||||||||    
T  35371358 tgttctgaagagtctcctgctcatcgaatg 35371387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 53 - 368
Target Start/End: Original strand, 35411230 - 35411545
Alignment:
Q  53 tgttgttgtttgaaaagagtatggagcgggtggccaagtatcacctcatggcgatatctacagctacgggattcttctattagaaatgctcactggaaag 152  Q
    ||||||||||||||||||||| ||||  ||||  | ||||||||| |  || |||||||||||||  |||||||||||| |||| ||| |||||| ||||    
T  35411230 tgttgttgtttgaaaagagtacggagaaggtgttccagtatcaccacggggagatatctacagctttgggattcttctactagagatgttcactgcaaag 35411329  T
Q  153 agaccaacaaatagcatgttttctgaaagtctaagtctacatgcattctgtaagatgaaaattccagaaggaatcctcgagatagtcgattcacatttgc 252  Q
    ||||||||||||| ||  |||||||| |||||||||||||||| |||||| || ||||||||| ||||||||||||| |||||||| |||||||||||||    
T  35411330 agaccaacaaataacaacttttctgagagtctaagtctacatgaattctgcaaaatgaaaatttcagaaggaatccttgagatagtagattcacatttgc 35411429  T
Q  253 tcgtgccatttgctgaagatcaaaaagggattgtggaagacaagatttggagttgtttggtgatgtttgccgcaattggagttgcatgttctgaagagtt 352  Q
    |  | ||||||||||||||| | | ||||||||||||| |||||||| ||| ||||||||||||||||||   ||| ||||||||||| ||||| |||||    
T  35411430 ttttaccatttgctgaagatgagacagggattgtggaaaacaagattaggaattgtttggtgatgtttgctagaatcggagttgcatgctctgacgagtt 35411529  T
Q  353 tcctgctcatcgaatg 368  Q
    ||||||||||||||||    
T  35411530 tcctgctcatcgaatg 35411545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 53 - 368
Target Start/End: Original strand, 35386584 - 35386899
Alignment:
Q  53 tgttgttgtttgaaaagagtatggagcgggtggccaagtatcacctcatggcgatatctacagctacgggattcttctattagaaatgctcactggaaag 152  Q
    ||||||||||||||||||||| ||||  ||||  | |||||||||  | || |||||||||||||  |||||||||||| |||| ||| |||| ||||||    
T  35386584 tgttgttgtttgaaaagagtacggagaaggtgttccagtatcaccaaagggagatatctacagctttgggattcttctactagagatgttcaccggaaag 35386683  T
Q  153 agaccaacaaatagcatgttttctgaaagtctaagtctacatgcattctgtaagatgaaaattccagaaggaatcctcgagatagtcgattcacatttgc 252  Q
    ||||||||||||| ||  |||||||| ||  ||||||| |||  |||||| || || ||||||||||||| |||||| |||||||| ||||| || ||||    
T  35386684 agaccaacaaataacaacttttctgagagattaagtctgcataaattctgcaaaataaaaattccagaagcaatccttgagatagtagattctcaattgc 35386783  T
Q  253 tcgtgccatttgctgaagatcaaaaagggattgtggaagacaagatttggagttgtttggtgatgtttgccgcaattggagttgcatgttctgaagagtt 352  Q
    |  | ||||||||||||||| | |  |||||||||||| |||||||| ||| |||||||||||||||||| ||||||||||| ||||||||| ||||| |    
T  35386784 tttttccatttgctgaagatgagatggggattgtggaaaacaagattaggaattgtttggtgatgtttgctgcaattggagtcgcatgttctaaagaggt 35386883  T
Q  353 tcctgctcatcgaatg 368  Q
      || |||||||||||    
T  35386884 cactactcatcgaatg 35386899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 53 - 222
Target Start/End: Original strand, 35755415 - 35755584
Alignment:
Q  53 tgttgttgtttgaaaagagtatggagcgggtggccaagtatcacctcatggcgatatctacagctacgggattcttctattagaaatgctcactggaaag 152  Q
    ||||||||||||||||||||||||||| ||||| |  ||||||||  | || ||||| |||||||| |||||||| || || |||||||| || ||||||    
T  35755415 tgttgttgtttgaaaagagtatggagcaggtggtccggtatcaccggagggagatatttacagctatgggattctgctgttggaaatgcttaccggaaag 35755514  T
Q  153 agaccaacaaatagcatgttttctgaaagtctaagtctacatgcattctgtaagatgaaaattccagaag 222  Q
    ||||||||| ||| |||||||| ||| | ||||| ||||||   |||||||||||||| |||||| ||||    
T  35755515 agaccaacagataacatgttttatgagaatctaactctacacaaattctgtaagatgagaattcctgaag 35755584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 53 - 263
Target Start/End: Original strand, 35367436 - 35367646
Alignment:
Q  53 tgttgttgtttgaaaagagtatggagcgggtggccaagtatcacctcatggcgatatctacagctacgggattcttctattagaaatgctcactggaaag 152  Q
    ||||||| |||||| ||| |||||||| ||||  | |||||| || || || ||| | |||||||  |||||||| || ||||| |||||||||||||||    
T  35367436 tgttgttatttgaatagaatatggagcaggtgttccagtatctccacagggagatgtttacagctttgggattctactgttagagatgctcactggaaag 35367535  T
Q  153 agaccaacaaatagcatgttttctgaaagtctaagtctacatgcattctgtaagatgaaaattccagaaggaatcctcgagatagtcgattcacatttgc 252  Q
    ||||||||| ||||||||||||  || | ||| || || ||   ||||||||||||||||||||| | || ||| || |||||||| |||||||||||||    
T  35367536 agaccaacagatagcatgttttgcgagaatcttagccttcacaaattctgtaagatgaaaattcccgtagaaattcttgagatagtggattcacatttgc 35367635  T
Q  253 tcgtgccattt 263  Q
    |  ||||||||    
T  35367636 ttatgccattt 35367646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 53 - 276
Target Start/End: Original strand, 35425984 - 35426207
Alignment:
Q  53 tgttgttgtttgaaaagagtatggagcgggtggccaagtatcacctcatggcgatatctacagctacgggattcttctattagaaatgctcactggaaag 152  Q
    ||||||||||| || |||||||||| | |||||    |||||||| || || |||||||| ||||| || ||| |||| ||||| ||||| |||||||||    
T  35425984 tgttgttgttttaatagagtatggatcaggtggtatggtatcaccacagggagatatctatagctatggaattgttctgttagagatgcttactggaaag 35426083  T
Q  153 agaccaacaaatagcatgttttctgaaagtctaagtctacatgcattctgtaagatgaaaattccagaaggaatcctcgagatagtcgattcacatttgc 252  Q
    ||||||||| ||| |||||||| ||| | | ||||| ||||   |||||||||||||| |||||| |||||||| || ||  |||| ||||||   ||||    
T  35426084 agaccaacagataacatgttttatgagaatttaagtttacacaaattctgtaagatgagaattcctgaaggaattcttgatgtagtggattcatgcttgc 35426183  T
Q  253 tcgtgccatttgctgaagatcaaa 276  Q
    |  || ||||||||||||||||||    
T  35426184 ttatgtcatttgctgaagatcaaa 35426207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 90 - 276
Target Start/End: Original strand, 35377062 - 35377248
Alignment:
Q  90 gtatcacctcatggcgatatctacagctacgggattcttctattagaaatgctcactggaaagagaccaacaaatagcatgttttctgaaagtctaagtc 189  Q
    |||||||| || || |||||||| ||||| || |||||||| ||||| ||||| |||||||||||||||||| ||| ||| |||| ||| | ||||||      
T  35377062 gtatcaccacagggagatatctatagctatggaattcttctgttagagatgcttactggaaagagaccaacagataacatcttttgtgagaatctaagct 35377161  T
Q  190 tacatgcattctgtaagatgaaaattccagaaggaatcctcgagatagtcgattcacatttgctcgtgccatttgctgaagatcaaa 276  Q
    ||||   ||| |||||||||||||||||||||||||| || || ||||| ||| ||   ||||| ||| |||||| |||||||||||    
T  35377162 tacacaaattttgtaagatgaaaattccagaaggaattcttgatatagtggatccatgcttgcttgtgtcatttgttgaagatcaaa 35377248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 339
Target Start/End: Complemental strand, 23936023 - 23935955
Alignment:
Q  271 atcaaaaagggattgtggaagacaagatttggagttgtttggtgatgtttgccgcaattggagttgcat 339  Q
    |||||| | ||||||||||| |||||||| |||| | |||||||||||||||   ||||| ||||||||    
T  23936023 atcaaacatggattgtggaaaacaagattaggaggtttttggtgatgtttgctagaattgaagttgcat 23935955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 136; Significance: 7e-71; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 53 - 368
Target Start/End: Complemental strand, 10415295 - 10414980
Alignment:
Q  53 tgttgttgtttgaaaagagtatggagcgggtggccaagtatcacctcatggcgatatctacagctacgggattcttctattagaaatgctcactggaaag 152  Q
    |||||||||| || ||||||| ||| | ||||  | ||||||||| || || |||||||| ||||  ||||||||||| ||||| |||||||||||||||    
T  10415295 tgttgttgttcgagaagagtacggaacaggtgttccagtatcaccacagggagatatctatagctttgggattcttctgttagagatgctcactggaaag 10415196  T
Q  153 agaccaacaaatagcatgttttctgaaagtctaagtctacatgcattctgtaagatgaaaattccagaaggaatcctcgagatagtcgattcacatttgc 252  Q
    ||||||||||||| |||||||||||| |||| ||||||||||| |||||| || |||||||||||||||||||||||||||||||| |||||||| || |    
T  10415195 agaccaacaaataacatgttttctgagagtcaaagtctacatgaattctgcaaaatgaaaattccagaaggaatcctcgagatagtagattcacaattac 10415096  T
Q  253 tcgtgccatttgctgaagatcaaaaagggattgtggaagacaagatttggagttgtttggtgatgtttgccgcaattggagttgcatgttctgaagagtt 352  Q
    |  |||||||||| |||| | | |  |||||||||||| | ||||||  ||  ||||||||||||||||  ||||| ||||||||||||||||||||  |    
T  10415095 ttttgccatttgccgaagttgagacggggattgtggaaaataagattaagaagtgtttggtgatgtttggtgcaatcggagttgcatgttctgaagaagt 10414996  T
Q  353 tcctgctcatcgaatg 368  Q
    |||| |||||||||||    
T  10414995 tccttctcatcgaatg 10414980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 53 - 274
Target Start/End: Complemental strand, 10420181 - 10419960
Alignment:
Q  53 tgttgttgtttgaaaagagtatggagcgggtggccaagtatcacctcatggcgatatctacagctacgggattcttctattagaaatgctcactggaaag 152  Q
    ||||||| |||||| ||| |||||||| ||||  | |||||| || || || ||| | |||||||  ||||||||  | ||||| |||||||||||||||    
T  10420181 tgttgttatttgaatagaatatggagcaggtgttccagtatctccccagggagatgtttacagctttgggattctcttgttagagatgctcactggaaag 10420082  T
Q  153 agaccaacaaatagcatgttttctgaaagtctaagtctacatgcattctgtaagatgaaaattccagaaggaatcctcgagatagtcgattcacatttgc 252  Q
    ||||||||| ||| |||||||    | | ||| || || ||   ||||||||||||||||||||| | || ||| || |||||||| |||||||||||||    
T  10420081 agaccaacagataacatgtttagccagaatcttagccttcacaaattctgtaagatgaaaattcctgtagaaattcttgagatagtggattcacatttgc 10419982  T
Q  253 tcgtgccatttgctgaagatca 274  Q
    |  |||||||| || |||||||    
T  10419981 ttatgccatttcctaaagatca 10419960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 126; Significance: 7e-65; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 89 - 370
Target Start/End: Complemental strand, 29622813 - 29622532
Alignment:
Q  89 agtatcacctcatggcgatatctacagctacgggattcttctattagaaatgctcactggaaagagaccaacaaatagcatgttttctgaaagtctaagt 188  Q
    ||||||||| || || |||||||||||||  || |||||||| ||||| ||||||||||||||||||||| || ||| |||||||| ||| | | ||||     
T  29622813 agtatcaccacagggagatatctacagctttggcattcttctgttagagatgctcactggaaagagaccagcagataacatgttttgtgagaatttaagc 29622714  T
Q  189 ctacatgcattctgtaagatgaaaattccagaaggaatcctcgagatagtcgattcacatttgctcgtgccatttgctgaagatcaaaaagggattgtgg 288  Q
    |||||   ||||||||||||||| |||||||||||||| || |||||||| ||||| | ||| ||  | ||||||||||||||||  | |||||||||||    
T  29622713 ctacacaaattctgtaagatgaagattccagaaggaattcttgagatagtggattcccgtttacttataccatttgctgaagatcggacagggattgtgg 29622614  T
Q  289 aagacaagatttggagttgtttggtgatgtttgccgcaattggagttgcatgttctgaagagtttcctgctcatcgaatgct 370  Q
    || |||||||| ||| ||||||||||||||||||   ||||||||||||||||||| |||||||||||||||||||||||||    
T  29622613 aaaacaagattaggaattgtttggtgatgtttgctagaattggagttgcatgttctcaagagtttcctgctcatcgaatgct 29622532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 370
Target Start/End: Original strand, 25829752 - 25829816
Alignment:
Q  309 ttggtgatgtttgccgcaattggagttgcatgttct---gaagagtttcctgctcatcgaatgct 370  Q
    |||||||||||||  | |||||||||| ||||||||   ||||||||||||||||||| ||||||    
T  25829752 ttggtgatgtttgaaggaattggagttacatgttctgaagaagagtttcctgctcatcaaatgct 25829816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 89 - 368
Target Start/End: Original strand, 1154282 - 1154561
Alignment:
Q  89 agtatcacctcatggcgatatctacagctacgggattcttctattagaaatgctcactggaaagagaccaacaaatagcatgttttctgaaagtctaagt 188  Q
    ||||||||| || || |||||||||||||  ||||||||||| ||||| |||||||| |||||||||||||| ||||| || |||| ||| | | ||||     
T  1154282 agtatcaccacagggagatatctacagctttgggattcttctgttagagatgctcaccggaaagagaccaaccaatagtatattttgtgagaatttaagc 1154381  T
Q  189 ctacatgcattctgtaagatgaaaattccagaaggaatcctcgagatagtcgattcacatttgctcgtgccatttgctgaagatcaaaaagggattgtgg 288  Q
    ||| | |  || ||||| ||||||||| | ||||||||||| |||||||||||   || ||||||  |||| ||||  |||||||| | ||  |||||||    
T  1154382 ctatacgagttttgtaaaatgaaaatttctgaaggaatccttgagatagtcgaccaacgtttgcttatgccgtttgtcgaagatcagacagaaattgtgg 1154481  T
Q  289 aagacaagatttggagttgtttggtgatgtttgccgcaattggagttgcatgttctgaagagtttcctgctcatcgaatg 368  Q
    || ||||||||   |  |||||||||||||||||   |||||||||||||||| ||||||||||||||||||||||||||    
T  1154482 aaaacaagattaaaaagtgtttggtgatgtttgctagaattggagttgcatgtactgaagagtttcctgctcatcgaatg 1154561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 7e-34; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 105 - 238
Target Start/End: Original strand, 15294354 - 15294487
Alignment:
Q  105 gatatctacagctacgggattcttctattagaaatgctcactggaaagagaccaacaaatagcatgttttctgaaagtctaagtctacatgcattctgta 204  Q
    |||||||||||||| |||||||| || || ||||||||||| |||||||||||||||||||||||||| | ||| | ||||||||||||   ||| ||||    
T  15294354 gatatctacagctatgggattctgctgttggaaatgctcaccggaaagagaccaacaaatagcatgttctgtgagaatctaagtctacagaaattttgta 15294453  T
Q  205 agatgaaaattccagaaggaatcctcgagatagt 238  Q
    |||||||||||||||||||||| || ||||||||    
T  15294454 agatgaaaattccagaaggaattcttgagatagt 15294487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 105 - 238
Target Start/End: Original strand, 15474723 - 15474856
Alignment:
Q  105 gatatctacagctacgggattcttctattagaaatgctcactggaaagagaccaacaaatagcatgttttctgaaagtctaagtctacatgcattctgta 204  Q
    |||||||||||||| |||||||| || || ||||||||||| |||||||||||||||||||||||||| | ||| | ||||||||||||   ||| ||||    
T  15474723 gatatctacagctatgggattctgctgttggaaatgctcaccggaaagagaccaacaaatagcatgttctgtgagaatctaagtctacagaaattttgta 15474822  T
Q  205 agatgaaaattccagaaggaatcctcgagatagt 238  Q
    |||||||||||||||||||||| || ||||||||    
T  15474823 agatgaaaattccagaaggaattcttgagatagt 15474856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 124 - 276
Target Start/End: Original strand, 13564891 - 13565043
Alignment:
Q  124 ttcttctattagaaatgctcactggaaagagaccaacaaatagcatgttttctgaaagtctaagtctacatgcattctgtaagatgaaaattccagaagg 223  Q
    ||||| |||| || |||||||| ||||||||||||||  ||| ||||||||| ||  |||||| ||||||    | ||||||||||||||||||||||||    
T  13564891 ttcttatattggagatgctcaccggaaagagaccaacggatatcatgttttccgacggtctaaatctacacaattactgtaagatgaaaattccagaagg 13564990  T
Q  224 aatcctcgagatagtcgattcacatttgctcgtgccatttgctgaagatcaaa 276  Q
    |||||| | |||||| |||  || ||||||  |||||||| | ||||||||||    
T  13564991 aatccttgcgatagtggatcaacgtttgcttatgccatttacggaagatcaaa 13565043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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