View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5222-Insertion-8 (Length: 140)

Name: NF5222-Insertion-8
Description: NF5222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5222-Insertion-8
NF5222-Insertion-8
[»] scaffold0018 (1 HSPs)
scaffold0018 (48-140)||(73850-73942)
[»] chr5 (2 HSPs)
chr5 (48-140)||(21972833-21972925)
chr5 (7-45)||(21976074-21976112)
[»] chr1 (1 HSPs)
chr1 (48-140)||(32621620-32621712)
[»] chr3 (3 HSPs)
chr3 (48-140)||(44481234-44481326)
chr3 (48-140)||(22736094-22736183)
chr3 (7-45)||(44478066-44478104)
[»] chr2 (1 HSPs)
chr2 (57-140)||(854660-854743)


Alignment Details
Target: scaffold0018 (Bit Score: 71; Significance: 1e-32; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 48 - 140
Target Start/End: Original strand, 73850 - 73942
Alignment:
Q  48 tggaagaaatttatgagttgaagaaagataagtggaagaagaagttgttasctgagaaaaagaaagtggcatggctgaagtgcattctggtgg 140  Q
    |||||| ||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| | ||||||||    
T  73850 tggaaggaatttatgacttgaagaaagataagtggaagaagaagatgttagctgagaaaaagaaagtggcatggctgaagtggagtctggtgg 73942  T

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Target: chr5 (Bit Score: 71; Significance: 1e-32; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 48 - 140
Target Start/End: Original strand, 21972833 - 21972925
Alignment:
Q  48 tggaagaaatttatgagttgaagaaagataagtggaagaagaagttgttasctgagaaaaagaaagtggcatggctgaagtgcattctggtgg 140  Q
    |||||| ||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| | ||||||||    
T  21972833 tggaaggaatttatgacttgaagaaagataagtggaagaagaagatgttagctgagaaaaagaaagtggcatggctgaagtggagtctggtgg 21972925  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 45
Target Start/End: Complemental strand, 21976112 - 21976074
Alignment:
Q  7 atcaaccaaggttcaacaagttttatttctgctttgaag 45  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  21976112 atcaaccaaggttcaacaagttttatttctgttttgaag 21976074  T

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Target: chr1 (Bit Score: 71; Significance: 1e-32; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 48 - 140
Target Start/End: Complemental strand, 32621712 - 32621620
Alignment:
Q  48 tggaagaaatttatgagttgaagaaagataagtggaagaagaagttgttasctgagaaaaagaaagtggcatggctgaagtgcattctggtgg 140  Q
    |||||| ||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| | ||||||||    
T  32621712 tggaaggaatttatgacttgaagaaagataagtggaagaagaagatgttagctgagaaaaagaaagtggcatggctgaagtggagtctggtgg 32621620  T

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Target: chr3 (Bit Score: 67; Significance: 2e-30; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 2e-30
Query Start/End: Original strand, 48 - 140
Target Start/End: Complemental strand, 44481326 - 44481234
Alignment:
Q  48 tggaagaaatttatgagttgaagaaagataagtggaagaagaagttgttasctgagaaaaagaaagtggcatggctgaagtgcattctggtgg 140  Q
    |||||| ||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||| | ||||||||    
T  44481326 tggaaggaatttatgacttgaagaaagataagtggaagaagaagatgttagctgagaaaaagaaagtggcatagctgaagtggagtctggtgg 44481234  T

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Target: chr3; HSP #2
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 48 - 140
Target Start/End: Original strand, 22736094 - 22736183
Alignment:
Q  48 tggaagaaatttatgagttgaagaaagataagtggaagaagaagttgttasctgagaaaaagaaagtggcatggctgaagtgcattctggtgg 140  Q
    |||||| ||||||||| |||||||||||||||||||||||||   ||||| ||||| ||||||||||||||||||||||||| ||||||||||    
T  22736094 tggaaggaatttatgacttgaagaaagataagtggaagaaga---tgttagctgagtaaaagaaagtggcatggctgaagtggattctggtgg 22736183  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 44478066 - 44478104
Alignment:
Q  7 atcaaccaaggttcaacaagttttatttctgctttgaag 45  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  44478066 atcaaccaaggttcaacaagttttatttctgttttgaag 44478104  T

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Target: chr2 (Bit Score: 46; Significance: 9e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 9e-18
Query Start/End: Original strand, 57 - 140
Target Start/End: Complemental strand, 854743 - 854660
Alignment:
Q  57 tttatgagttgaagaaagataagtggaagaagaagttgttasctgagaaaaagaaagtggcatggctgaagtgcattctggtgg 140  Q
    ||||||| ||||||||||| |||||||||||||| ||||||  ||||||||||||||||| |||  ||||||| ||| ||||||    
T  854743 tttatgaattgaagaaagacaagtggaagaagaatttgttagttgagaaaaagaaagtggaatgattgaagtgaattatggtgg 854660  T

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