View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5222_high_1 (Length: 451)
Name: NF5222_high_1
Description: NF5222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5222_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Original strand, 28512180 - 28512610
Alignment:
| Q |
1 |
tagatcatcacagttgactgcagtgttagtttcataggctggtgttctcaagctcttcgtcctcatccgtaagcaagtcaccaccaccacnnnnnnnnnn |
100 |
Q |
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| T |
28512180 |
tagatcatcacagttgactgcagtgttagtttcataggctggtgttctcaagctcttcgtcctcatccgtaagcaagtcaccaccaccaccatcatcatc |
28512279 |
T |
|
| Q |
101 |
nnnnnnnaatgattctcgatctttaagaaagtatccatccttcgagtacttataatcattccccctccaaactacaatttgttctttatcaaaagtcacc |
200 |
Q |
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| T |
28512280 |
atcatcaaatgattctcgatctttaagaaagtatccatccttcgagtacttataatcattccccctccaaactacaatttgttctttatcaaaagtcacc |
28512379 |
T |
|
| Q |
201 |
agaacacaggggaccaggtcctgcatcgacacatgagacagttgaaaatcagcaatttaaagtgccaagcccaaataaaaagaacctggaagctataaat |
300 |
Q |
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| T |
28512380 |
agaacacaggggaccaggtcctgcatcgacacatgagacagttgaaaatcagcaatttaaagtgccaagcccaaataaaaagaacctggaaactataaat |
28512479 |
T |
|
| Q |
301 |
catgaatctgtgtaaaaagtttgaacggtagaacagaatgccaccaattctgcattacaatcaccactattataattatttacttcacattattaaaagg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28512480 |
catgaatctgtgtaaaaagtttgaacggtagaacagaatgccaccaattctgcattacaatcaccactattataattatttacttcacattattaaaagg |
28512579 |
T |
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| Q |
401 |
gtatattgaactttaccccttaggtttgact |
431 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
28512580 |
gtatattgaactttaccccttaggtttgact |
28512610 |
T |
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