View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5222_high_4 (Length: 318)
Name: NF5222_high_4
Description: NF5222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5222_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 24 - 303
Target Start/End: Original strand, 32117411 - 32117677
Alignment:
| Q |
24 |
tgtaaccttgaagttgtgtttaatattaatgtgaatattagtattctacttataatgagtttaaatttgatatataggtataattcaagtaaaaatgaaa |
123 |
Q |
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| T |
32117411 |
tgtaacgttgaagttgtgtttaatattaatgtgaatattagtattctacttataatgggtttaaatttgatata--------attcaagtaaaaatgtaa |
32117502 |
T |
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| Q |
124 |
aacttttcaaatgaatattttccaaattttagtcatagatagggtaggtaaagtttgattgacctcatagatggaattctttgtagaaatggactataaa |
223 |
Q |
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| T |
32117503 |
aacttttcaaatgaatattttccaaattttagtcatagatagggtaggtaaagtttgattgacctcatagttggaattctttgtaaaaatggactataaa |
32117602 |
T |
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| Q |
224 |
gcacacgaatatcatgcacggcatgtttttatgaatgtaaaatattcatatatacataagtaaactacgtgtgttggtgt |
303 |
Q |
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| T |
32117603 |
gcacacgaatatcatgcacgacatgtttttatgaatgtaaaatattcatatat-----agtaaaccacgtgtgttggtgt |
32117677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 87
Target Start/End: Complemental strand, 10587872 - 10587825
Alignment:
| Q |
40 |
tgtttaatattaatgtgaatattagtattctacttataatgagtttaa |
87 |
Q |
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| T |
10587872 |
tgtttaatattaatatgaatattagtattatacttataatgagtttaa |
10587825 |
T |
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