View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5222_low_3 (Length: 425)
Name: NF5222_low_3
Description: NF5222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5222_low_3 |
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| [»] chr3 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 44477551 - 44477975
Alignment:
| Q |
1 |
gttcaaagttggtatggactttaagtcaattgcagagttcaaggaggcaattagtgagtggtctgtattaaatttaaggcagataaagtttgtgaaacag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||| |
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| T |
44477551 |
gttcaaagttggtatggactttaagtcaattgcagagttcaaggaggcaattagtgagtggtcagtattaaacttaagacagataaagtttgtgaaacaa |
44477650 |
T |
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| Q |
101 |
gacaaggaaagatgtagggcagtgtgtaaagataccaagtgcaattatgtggtttattgtagcaaagtggcagacagccacacatttaaaataaagacat |
200 |
Q |
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|||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44477651 |
gacaaggaaagatgtagggcagtgtgtaaagatataaaatgcaattatgtggttcattgtagcaaagtggcagacagccacacatttaaaataaagacat |
44477750 |
T |
|
| Q |
201 |
tagttggggaccacacatgtgctaagtccattnnnnnnncaattgctacttccaagtgggtgacaaaggaagtgcttccaaagataatgacaactggtga |
300 |
Q |
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| T |
44477751 |
taagtggggaccacacatgtgccaagtctattaaaaaaacaattgctacttccaagtgggtgacaaaggaagtgcttccaaagataatgacaactggtga |
44477850 |
T |
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| Q |
301 |
catgcctgtcaaagatataatgaaggacttgaggaggaaacattcagtaggtgtatctttccatgtagcttggaaggcaaagaaaatggcaaaagaaatc |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
44477851 |
tatgcctgtcaaagatataatgaaggacttgaggaggaaatattcagtgggtgtatctttccatgtagcttggaaggcaaagaaaatggctaaagaaatc |
44477950 |
T |
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| Q |
401 |
atttaaggtgatgctaagaaacaat |
425 |
Q |
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| T |
44477951 |
attgaaggtgatgctaagaaacaat |
44477975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Complemental strand, 21976627 - 21976203
Alignment:
| Q |
1 |
gttcaaagttggtatggactttaagtcaattgcagagttcaaggaggcaattagtgagtggtctgtattaaatttaaggcagataaagtttgtgaaacag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||| |
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| T |
21976627 |
gttcaaagttggtatggactttaagtcaattgcagagttcaaggaggcaattagtgagtggtcagtattaaacttaagacagataaagtttgtgaaacaa |
21976528 |
T |
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| Q |
101 |
gacaaggaaagatgtagggcagtgtgtaaagataccaagtgcaattatgtggtttattgtagcaaagtggcagacagccacacatttaaaataaagacat |
200 |
Q |
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| T |
21976527 |
gacaaggaaagatgtagggcagtgtgtaaagatataaaatgcaattatgtggttcattgtagcaaagtggcagacagccacacatttaaaataaagacat |
21976428 |
T |
|
| Q |
201 |
tagttggggaccacacatgtgctaagtccattnnnnnnncaattgctacttccaagtgggtgacaaaggaagtgcttccaaagataatgacaactggtga |
300 |
Q |
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| T |
21976427 |
taagtggggaccacacatgtgccaagtctattaaaaaaacaattgctacttccaagtgggtgacaaaggaagtgcttccaaagataatgacaactggtga |
21976328 |
T |
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| Q |
301 |
catgcctgtcaaagatataatgaaggacttgaggaggaaacattcagtaggtgtatctttccatgtagcttggaaggcaaagaaaatggcaaaagaaatc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
21976327 |
tgtgcctgtcaaagatataatgaaggacttgaggaggaaatattcagtgggtgtatctttccatgtagcttggaaggcaaagaaaatggctaaagaaatc |
21976228 |
T |
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| Q |
401 |
atttaaggtgatgctaagaaacaat |
425 |
Q |
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||| ||||||||||||||||||||| |
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| T |
21976227 |
attgaaggtgatgctaagaaacaat |
21976203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 2 - 221
Target Start/End: Complemental strand, 13650674 - 13650449
Alignment:
| Q |
2 |
ttcaaagttggtatggactttaagtcaattgcagagttcaaggaggcaattagtgagtggtctgtattaaatttaaggcagataaagtttgtgaaacagg |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||| || || |||| | |||||||||| | || || |||||||||||| | | |
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| T |
13650674 |
ttcaaagttggtatggactttaagtcaattgcagagttcagaatggccatgagggagttgaatgtattaaatggatatcaaattaagtttgtgaaaaatg |
13650575 |
T |
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| Q |
102 |
acaaggaaagatgtagggcagtgtgtaaagata---ccaa---gtgcaattatgtggtttattgtagcaaagtggcagacagccacacatttaaaataaa |
195 |
Q |
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|||||||||| ||||||| || |||||| |||| ||| |||||| ||||||| | || ||||||||||| ||||||| |||| ||||||||| |
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| T |
13650574 |
acaaggaaaggtgtagggtagagtgtaaggataagcacaaggggtgcaagtatgtggcccactgcagcaaagtggctaacagccatacatataaaataaa |
13650475 |
T |
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| Q |
196 |
gacattagttggggaccacacatgtg |
221 |
Q |
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| T |
13650474 |
gacattgggtgtggaccacacatgtg |
13650449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 2 - 221
Target Start/End: Original strand, 47734520 - 47734745
Alignment:
| Q |
2 |
ttcaaagttggtatggactttaagtcaattgcagagttcaaggaggcaattagtgagtggtctgtattaaatttaaggcagataaagtttgtgaaacagg |
101 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||| ||| || || |||| | |||||||||| | || || |||||||||||| | | |
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| T |
47734520 |
ttcaaagttggtatggactttaagtcaattgaagagttcagaatggccataagggagtagaatgtattaaatggatatcaaattaagtttgtgaaaaatg |
47734619 |
T |
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| Q |
102 |
acaaggaaagatgtagggcagtgtgtaaagata---ccaa---gtgcaattatgtggtttattgtagcaaagtggcagacagccacacatttaaaataaa |
195 |
Q |
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|||||||||| ||||||| || |||||| |||| ||| |||||| ||||||| | || ||||||||||| ||||||| |||| ||||||||| |
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| T |
47734620 |
acaaggaaaggtgtagggtagagtgtaaggataagcacaaggggtgcaagtatgtggcccactgcagcaaagtggctaacagccatacatataaaataaa |
47734719 |
T |
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| Q |
196 |
gacattagttggggaccacacatgtg |
221 |
Q |
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|||||| | || |||||||||||||| |
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| T |
47734720 |
gacattgggtgtggaccacacatgtg |
47734745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 2 - 221
Target Start/End: Original strand, 35597981 - 35598206
Alignment:
| Q |
2 |
ttcaaagttggtatggactttaagtcaattgcagagttcaaggaggcaattagtgagtggtctgtattaaatttaaggcagataaagtttgtgaaacagg |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| ||| ||||| |||||| |||||||||| | || || |||||||||||| | | |
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| T |
35597981 |
ttcaaagttggtatggactttaagtcaattgtagagttcagaatggccattagggagtggaatgtattaaatggatatcaaattaagtttgtgaaaaatg |
35598080 |
T |
|
| Q |
102 |
acaaggaaagatgtagggcagtgtgtaaagata---ccaa---gtgcaattatgtggtttattgtagcaaagtggcagacagccacacatttaaaataaa |
195 |
Q |
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|||||||||| ||||||| || |||||| |||| ||| |||||| |||| || | || ||||||||||| ||||||| |||| ||||||||| |
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| T |
35598081 |
acaaggaaaggtgtagggtagagtgtaaggataaacacaatgggtgcaagtatgaggcccactgcagcaaagtggctaacagccatacatataaaataaa |
35598180 |
T |
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| Q |
196 |
gacattagttggggaccacacatgtg |
221 |
Q |
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|||||| | || || ||||||||||| |
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| T |
35598181 |
gacattgggtgtggcccacacatgtg |
35598206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 221
Target Start/End: Complemental strand, 41772036 - 41771976
Alignment:
| Q |
161 |
agcaaagtggcagacagccacacatttaaaataaagacattagttggggaccacacatgtg |
221 |
Q |
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|||||||||||| ||||||| |||| ||||||||||||||| | | || ||||||||||| |
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| T |
41772036 |
agcaaagtggcaaacagccatacatataaaataaagacattgggtatggcccacacatgtg |
41771976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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