View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5222_low_4 (Length: 410)
Name: NF5222_low_4
Description: NF5222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5222_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 134; Significance: 1e-69; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 21 - 178
Target Start/End: Original strand, 3320832 - 3320989
Alignment:
| Q |
21 |
tcaggaaaattaggtgatattgttcttggatatgatactccaaaggcatatactgtaagtcttgtcctaaaacattgccttgaatatgtttacattttga |
120 |
Q |
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| T |
3320832 |
tcaggaaaattaggtgatattgttcttggatatgatactccaaaggcatatactgtaagtcttgttctaaaacattgccttgaatatgtttacattttgc |
3320931 |
T |
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| Q |
121 |
attttgagttctgttttattttcttgacatttagtcagagaaaaggataaaacttcca |
178 |
Q |
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| T |
3320932 |
atattgagttctgttttattttcttgacatttagttagggaaaaggataaaacgtcca |
3320989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 176 - 303
Target Start/End: Original strand, 3321019 - 3321148
Alignment:
| Q |
176 |
ccacacatattttcttcttagacggcaaagttttgtatgtgacacatttggatttggaatttagagtaccaaaattgtcttttattttag--atttttat |
273 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||| | |
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| T |
3321019 |
ccacacatattttcttcttagacggcaaagttgcctatgtgacacatttggatttggattttacagtaccaaaattgtcttttattttagtttttttttt |
3321118 |
T |
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| Q |
274 |
cttgactccattcaacctggcctacaaaac |
303 |
Q |
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| T |
3321119 |
cttgactctattcaacctggcctaaaaaac |
3321148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 3314019 - 3314082
Alignment:
| Q |
21 |
tcaggaaaattaggtgatattgttcttggatatgatactccaaaggcatatactgtaagtcttg |
84 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3314019 |
tcaggaaacttaggtgatattgttcttggatatgatactcccaaggcatatactgtaagtcttg |
3314082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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