View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5222_low_5 (Length: 395)
Name: NF5222_low_5
Description: NF5222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5222_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 19 - 387
Target Start/End: Original strand, 44891297 - 44891669
Alignment:
| Q |
19 |
cttcactacatccatcattaagaatatcagaatattcatttctgtgaatctttttaacatttcttcccccgtggactctgtaatatcaaaattggaatca |
118 |
Q |
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| T |
44891297 |
cttcaatacatccatcattaagagtaccagaatattcatttctgtgaatctttttgacatttcttcccccgtggactctgtaatatcaaaattggaatca |
44891396 |
T |
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| Q |
119 |
tacaactttgaggccagccacaaattttgccgcaagtttgttgtgtttaatgacactggaaaaagcgaaggnnnnnnnngacttgaggcatgaattgcaa |
218 |
Q |
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| T |
44891397 |
tacaactttgaggccagccacaaattttgccgcaagtttgttgtgtttaatgacactggaaaaagcgaaggatttttttgacttgaggcatgaattgcaa |
44891496 |
T |
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| Q |
219 |
ttcttctagaccacatattt-ctttacttgtgaaatatgtggtaatttgacacattgaatttaaaaaatatcatttcttaatataaagtaatatgaagta |
317 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
44891497 |
ttcttctagaccacatattttctttacttgtgaaatatgtggtaatttgacacattgaatttaaaaaatatcatttcttaatataaagtaatgtgaagta |
44891596 |
T |
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| Q |
318 |
attcttaaatcttagccctttattctgttcaccattcattgagtgccac---tgttgtgtctgttagaattat |
387 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
44891597 |
attcttaaatcttagccctttattctgttcaccattcattgagtgccactgttgttgtgtctgttagaattat |
44891669 |
T |
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