View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5223_high_2 (Length: 342)

Name: NF5223_high_2
Description: NF5223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5223_high_2
NF5223_high_2
[»] chr5 (3 HSPs)
chr5 (183-342)||(38816773-38816932)
chr5 (163-207)||(19820459-19820503)
chr5 (163-207)||(22013364-22013408)
[»] scaffold1371 (1 HSPs)
scaffold1371 (30-62)||(1558-1590)
[»] chr7 (3 HSPs)
chr7 (30-62)||(9670725-9670757)
chr7 (163-207)||(27944991-27945035)
chr7 (163-207)||(40132025-40132069)
[»] chr8 (2 HSPs)
chr8 (165-208)||(40332154-40332197)
chr8 (163-207)||(25192412-25192456)
[»] chr6 (1 HSPs)
chr6 (163-207)||(8365584-8365628)
[»] chr2 (1 HSPs)
chr2 (163-207)||(20539739-20539783)
[»] chr1 (1 HSPs)
chr1 (163-207)||(5927405-5927449)


Alignment Details
Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 183 - 342
Target Start/End: Original strand, 38816773 - 38816932
Alignment:
Q  183 cggagtccgtattcgtgcttcatagtatatggttaccgttcaattattctattttctcaaattattgcttcaattcaagcaatgatacaaacaatatacc 282  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  38816773 cggagtccgtattagtgcttcatagtatatggttaccgttcaattattctattttctcaaattattgcttcaattcaaacaatgatacaaacaatatacc 38816872  T
Q  283 atattacattaattgaattgtaaaacccaactatttttaacctgcagcgactctctgttg 342  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816873 atattacattaattgaattgtaaaacccaactatttttaacctgcagcgactctctgttg 38816932  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 19820459 - 19820503
Alignment:
Q  163 gtcagtgtccgtgccgtgtccggagtccgtattcgtgcttcatag 207  Q
    ||||||||||||| ||||||||| |||||||| ||||||||||||    
T  19820459 gtcagtgtccgtgtcgtgtccggtgtccgtatccgtgcttcatag 19820503  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 22013408 - 22013364
Alignment:
Q  163 gtcagtgtccgtgccgtgtccggagtccgtattcgtgcttcatag 207  Q
    ||||||||||||| ||||||||| |||||||| ||||||||||||    
T  22013408 gtcagtgtccgtgtcgtgtccggtgtccgtatccgtgcttcatag 22013364  T

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Target: scaffold1371 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1371
Description:

Target: scaffold1371; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 1590 - 1558
Alignment:
Q  30 atgacaaaatcctgcaaaagctgaactgccact 62  Q
    |||||||||||||||||||||||||||||||||    
T  1590 atgacaaaatcctgcaaaagctgaactgccact 1558  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 9670725 - 9670757
Alignment:
Q  30 atgacaaaatcctgcaaaagctgaactgccact 62  Q
    |||||||||||||||||||||||||||||||||    
T  9670725 atgacaaaatcctgcaaaagctgaactgccact 9670757  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 27945035 - 27944991
Alignment:
Q  163 gtcagtgtccgtgccgtgtccggagtccgtattcgtgcttcatag 207  Q
    ||||||||||||| ||||||||| |||||||| ||||||||||||    
T  27945035 gtcagtgtccgtgtcgtgtccggtgtccgtatccgtgcttcatag 27944991  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 40132025 - 40132069
Alignment:
Q  163 gtcagtgtccgtgccgtgtccggagtccgtattcgtgcttcatag 207  Q
    ||||||||||||||||||||||| |||| ||| ||| ||||||||    
T  40132025 gtcagtgtccgtgccgtgtccggtgtccatatccgtacttcatag 40132069  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 165 - 208
Target Start/End: Complemental strand, 40332197 - 40332154
Alignment:
Q  165 cagtgtccgtgccgtgtccggagtccgtattcgtgcttcatagt 208  Q
    ||||||||||| ||||||||| |||||||| |||||||||||||    
T  40332197 cagtgtccgtgtcgtgtccggtgtccgtatccgtgcttcatagt 40332154  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 25192412 - 25192456
Alignment:
Q  163 gtcagtgtccgtgccgtgtccggagtccgtattcgtgcttcatag 207  Q
    ||||||||||||  ||||||||  |||||||||||||||||||||    
T  25192412 gtcagtgtccgtatcgtgtccgatgtccgtattcgtgcttcatag 25192456  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 8365584 - 8365628
Alignment:
Q  163 gtcagtgtccgtgccgtgtccggagtccgtattcgtgcttcatag 207  Q
    ||||||||||||| |||||| || |||||||| ||||||||||||    
T  8365584 gtcagtgtccgtgtcgtgtctggtgtccgtatccgtgcttcatag 8365628  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 20539739 - 20539783
Alignment:
Q  163 gtcagtgtccgtgccgtgtccggagtccgtattcgtgcttcatag 207  Q
    ||||||||||||| ||||||| | |||||||| ||||||||||||    
T  20539739 gtcagtgtccgtgtcgtgtccagtgtccgtatccgtgcttcatag 20539783  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 5927405 - 5927449
Alignment:
Q  163 gtcagtgtccgtgccgtgtccggagtccgtattcgtgcttcatag 207  Q
    ||||||||||||| ||||||||| |||||||| ||||||| ||||    
T  5927405 gtcagtgtccgtgtcgtgtccggtgtccgtatccgtgcttaatag 5927449  T

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