View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5223_high_3 (Length: 316)
Name: NF5223_high_3
Description: NF5223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5223_high_3 |
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| [»] chr5 (5 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 9 - 316
Target Start/End: Complemental strand, 37841829 - 37841522
Alignment:
| Q |
9 |
agcagagattgggtgggatattgccattgaacttgttattcatacagtccaacttcactatactgctgttgattcccaagctttgaggtatgactcctga |
108 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37841829 |
agcaaagattgggtgggatattgccattgaacttgttattcatacagtccaacttcactatactgctgttgattcccaagctttgaggtatgactcctga |
37841730 |
T |
|
| Q |
109 |
gaactgattatcaaacaatgagatatttcttagatacttgagctctgtcatctcaaaaggtagttcgccagagaggctgttgttgtgaaccaagatgtgc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
37841729 |
gaactgattatcaaacaatgagatatttcttagatacttgagctctgtcatctcaaaaggtagttctccagagaggctgttgttgtgaaccaagatgtgc |
37841630 |
T |
|
| Q |
209 |
aaaagactttgtattctccaaacaaagactagaatttcacctctcaaacggttgaaagataagttaaggtcctctagtttactacaattaccaatagctg |
308 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37841629 |
aaaagactttgtattctccaaacaaagaccggaatttcacctctcaaacggttgaaagataagttaaggtcctctagtttactacaattaccaatagctg |
37841530 |
T |
|
| Q |
309 |
aaggaata |
316 |
Q |
| |
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|||||||| |
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| T |
37841529 |
aaggaata |
37841522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 16 - 316
Target Start/End: Complemental strand, 37849578 - 37849278
Alignment:
| Q |
16 |
attgggtgggatattgccattgaacttgttattcatacagtccaacttcactatactgctgttgattcccaagctttgaggtatgactcctgagaactga |
115 |
Q |
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||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
37849578 |
attgggtgggatattaccactgaacttgttattcatacagtccaacttcactatgctgctgtttattcccaagctttgaggtgtgactcctgagaactga |
37849479 |
T |
|
| Q |
116 |
ttatcaaacaatgagatatttcttagatacttgagctctgtcatctcaaaaggtagttcgccagagaggctgttgttgtgaaccaagatgtgcaaaagac |
215 |
Q |
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||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||| | ||||||||||||||||||||||| ||||||| ||||| |
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| T |
37849478 |
ttatcaaacaatgagatattttttagatacttgagctttgtcatctcgaaaggtagttccctggagaggctgttgttgtgaaccaatatgtgcacaagac |
37849379 |
T |
|
| Q |
216 |
tttgtattctccaaacaaagactagaatttcacctctcaaacggttgaaagataagttaaggtcctctagtttactacaattaccaatagctgaaggaat |
315 |
Q |
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|| |||||||||||| ||| ||||||| |||||||||||||||||||| || | ||||||||||| ||| || |||||||||| || || |||||| |
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| T |
37849378 |
ttgaaattctccaaacactgaccggaatttcgcctctcaaacggttgaaagaaaattcaaggtcctctaatttgctgcaattaccaagagatgtaggaat |
37849279 |
T |
|
| Q |
316 |
a |
316 |
Q |
| |
|
| |
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|
| T |
37849278 |
a |
37849278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 9 - 316
Target Start/End: Complemental strand, 37836210 - 37835903
Alignment:
| Q |
9 |
agcagagattgggtgggatattgccattgaacttgttattcatacagtccaacttcactatactgctgttgattcccaagctttgaggtatgactcctga |
108 |
Q |
| |
|
|||| ||||||||||||||||| || |||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
37836210 |
agcaaagattgggtgggatattaccgctgaacttgttattcataccgtccaacttcactattctgctgttgattcctaagctttgaggtatgactcctga |
37836111 |
T |
|
| Q |
109 |
gaactgattatcaaacaatgagatatttcttagatacttgagctctgtcatctcaaaaggtagttcgccagagaggctgttgttgtgaaccaagatgtgc |
208 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||| ||||| ||||||||||||||||||||||||||||||| | |
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| T |
37836110 |
gaactgattatcaaacaatgagatattttttagatacttgagctttgtcatctcgaaaggcagttccccagagaggctgttgttgtgaaccaagatgttc |
37836011 |
T |
|
| Q |
209 |
aaaagactttgtattctccaaacaaagactagaatttcacctctcaaacggttgaaagataagttaaggtcctctagtttactacaattaccaatagctg |
308 |
Q |
| |
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| ||||||| |||||||||||| ||| |||||| ||||||| ||||||||||| || | ||||||||||| |||||| |||||||||| || || |
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| T |
37836010 |
acaagacttgaaattctccaaacactgaccggaattttgcctctcagtcggttgaaagacaattcaaggtcctctaatttactgcaattaccaagagatg |
37835911 |
T |
|
| Q |
309 |
aaggaata |
316 |
Q |
| |
|
|||||||| |
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|
| T |
37835910 |
aaggaata |
37835903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 14 - 315
Target Start/End: Complemental strand, 37830501 - 37830200
Alignment:
| Q |
14 |
agattgggtgggatattgccattgaacttgttattcatacagtccaacttcactatactgctgttgattcccaagctttgaggtatgactcctgagaact |
113 |
Q |
| |
|
||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37830501 |
agatttggtgggatattaccactgaacttgttattcatacagtccaacttcactatgctgctgttgattcccaagctttgaggtatgactcctgagaact |
37830402 |
T |
|
| Q |
114 |
gattatcaaacaatgagatatttcttagatacttgagctctgtcatctcaaaaggtagttcgccagagaggctgttgttgtgaaccaagatgtgcaaaag |
213 |
Q |
| |
|
|||| ||||||||||||| |||| ||||| |||| || | ||| || || ||||||||||| ||| |||| ||||||||||||||||||||||| ||| |
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| T |
37830401 |
gattttcaaacaatgagacattttttagacacttaaggtttgtgatttccaaaggtagttccccaaagagatcgttgttgtgaaccaagatgtgcacaag |
37830302 |
T |
|
| Q |
214 |
actttgtattctccaaacaaagactagaatttcacctctcaaacggttgaaagataagttaaggtcctctagtttactacaattaccaatagctgaagga |
313 |
Q |
| |
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|||||| |||||||||| | ||| |||||||||||||||||||||||||||| || | |||||| || |||||||| ||||| |||| || ||||||| |
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| T |
37830301 |
actttgaattctccaaatactgaccggaatttcacctctcaaacggttgaaagacaaatcaaggtcttcaagtttactgcaattgccaagagatgaagga |
37830202 |
T |
|
| Q |
314 |
at |
315 |
Q |
| |
|
|| |
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|
| T |
37830201 |
at |
37830200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 51 - 144
Target Start/End: Original strand, 26640749 - 26640842
Alignment:
| Q |
51 |
tacagtccaacttcactatactgctgttgattcccaagctttgaggtatgactcctgagaactgattatcaaacaatgagatatttcttagata |
144 |
Q |
| |
|
||||||| |||||||| || |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
26640749 |
tacagtctaacttcacaatgctgctgttgattcccaagctttgaggtatgcctcctgagaactgattgtcaaacaatgagatatttcatagata |
26640842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 9 - 316
Target Start/End: Complemental strand, 36864966 - 36864667
Alignment:
| Q |
9 |
agcagagattgggtgggatattgccattgaacttgttattcatacagtccaacttcactatactgctgttgattcccaagctttgaggtatgactcctga |
108 |
Q |
| |
|
|||| ||||| ||||||||||| ||||| |||||||||||||||| |||||||||||||| | |||||||||||||||||||||| ||||||||||| |
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| T |
36864966 |
agcaaagatttggtgggatattaccattaaacttgttattcatac-gtccaacttcactaaggtattgttgattcccaagctttgaggaatgactcctga |
36864868 |
T |
|
| Q |
109 |
gaactgattatcaaacaatgagatatttcttagatacttgagctctgtcatctcaaaaggtagttcgccagagaggctgttgttgtgaaccaagatgtgc |
208 |
Q |
| |
|
||||||||| ||||||||||| |||||||| |||| | ||||| || ||||||||||| |||||||||||||||| |||||||||||| ||| |
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|
| T |
36864867 |
gaactgattg-------atgagatattttttagatacctgaggttcgtcatttcgaaaggtagttccccagagaggctgttgtggtgaaccaagatatgc |
36864775 |
T |
|
| Q |
209 |
aaaagactttgtattctccaaacaaagactagaatttcacctctcaaacggttgaaagataagttaaggtcctctagtttactacaattaccaatagctg |
308 |
Q |
| |
|
| ||| ||| |||||||||| | | | |||||| |||||||||||||||||||| || | |||||||||||||||||| || ||||||| || || |
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|
| T |
36864774 |
acaaggcttgaaattctccaaatactggcctgaatttttcctctcaaacggttgaaagacaattcaaggtcctctagtttactgcagttaccaagagatg |
36864675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 14 - 162
Target Start/End: Complemental strand, 45560805 - 45560657
Alignment:
| Q |
14 |
agattgggtgggatattgccattgaacttgttattcatacagtccaacttcactatactgctgttgattcccaagctttgaggtatgactcctgagaact |
113 |
Q |
| |
|
||||||||||||| |||||| ||||| | ||||| ||| |||| || | || | |||||| ||||||||||||||||||||||||||||| |||||| |
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|
| T |
45560805 |
agattgggtgggaggttgccagtgaacctattatttataaagtctaattgcaacaaactgctattgattcccaagctttgaggtatgactccagagaaca |
45560706 |
T |
|
| Q |
114 |
gattatcaaacaatgagatatttcttagatacttgagctctgtcatctc |
162 |
Q |
| |
|
| || |||||||||||||| ||| | || | |||||||||||||||||| |
|
|
| T |
45560705 |
ggttgtcaaacaatgagatgtttttgaggttcttgagctctgtcatctc |
45560657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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