View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5223_low_1 (Length: 217)

Name: NF5223_low_1
Description: NF5223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5223_low_1
NF5223_low_1
[»] chr4 (1 HSPs)
chr4 (13-210)||(38116272-38116460)
[»] chr8 (2 HSPs)
chr8 (13-210)||(45113687-45113898)
chr8 (13-42)||(11288320-11288349)
[»] chr5 (1 HSPs)
chr5 (13-104)||(1015885-1015973)
[»] chr3 (2 HSPs)
chr3 (106-182)||(22776232-22776309)
chr3 (69-114)||(22776157-22776202)
[»] chr7 (1 HSPs)
chr7 (150-210)||(34351873-34351933)


Alignment Details
Target: chr4 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 13 - 210
Target Start/End: Original strand, 38116272 - 38116460
Alignment:
Q  13 atcatcatagttgaaaagggtaggagcaggtctttgagaaagatgtcggtggcggctgggctggttcggctgagactgctgatgttagcagcagtttctg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||    
T  38116272 atcatcatagttgaaaagggtaggagcaggtctttgagaaagatgtcggtggcggctgggct---------gagactgctgatgttagcagcagtttctg 38116362  T
Q  113 tttggttgtggcagctatggtgtggccggtttaggtattggtttggagcaactgctggtgcgttttttggatggttgttgttgttggaattgatgatg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38116363 tttggttgtggcagctatggtgtggccggtttaggtattggtttggagcaactgctggtgcgttttttggatggttgttgttgttggaattgatgatg 38116460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 13 - 210
Target Start/End: Original strand, 45113687 - 45113898
Alignment:
Q  13 atcatcatagttgaaaagggtaggagcaggtctttgagaaagatgtcggtggcggctgggctggttcggctgagactgctgatgttag------------ 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| ||||    |||||| |||||||||||||||||| ||||||                
T  45113687 atcatcatagttgaaaagggtaggagcaagtctttgagaaagatgtcagtggt---tgggctagttcggctgagactgctgctgttagtagctgctagct 45113783  T
Q  101 -------cagcagtttctgtttggttgtggcagctatggtgtggccggtttaggtattggtttggagcaactgctggtgcgttttttggatggttgttgt 193  Q
           |||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||| |||||| |  ||| |||||    
T  45113784 gcgtgtgcagctgtttctgtttggttgtggcagctagggtgtggccgatttaggtattggtttggaacaactgctggtgcatttttttg--ggtggttgt 45113881  T
Q  194 tgttggaattgatgatg 210  Q
    |||||||||||||||||    
T  45113882 tgttggaattgatgatg 45113898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 13 - 42
Target Start/End: Original strand, 11288320 - 11288349
Alignment:
Q  13 atcatcatagttgaaaagggtaggagcagg 42  Q
    ||||||||||||||||||||||||||||||    
T  11288320 atcatcatagttgaaaagggtaggagcagg 11288349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 1015885 - 1015973
Alignment:
Q  13 atcatcatagttgaaaagggtaggagcaggtctttgagaaagatgtcggtggcggctgggctggttcggctgagactgctgatgttagcagc 104  Q
    |||||||||  |||||||||||||||||||||||||||||| ||||| ||   ||||||||||||||||||||||||| || ||||||||||    
T  1015885 atcatcataactgaaaagggtaggagcaggtctttgagaaatatgtctgt---ggctgggctggttcggctgagactgttgctgttagcagc 1015973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 182
Target Start/End: Original strand, 22776232 - 22776309
Alignment:
Q  106 gtttctgtttggttgtggcagcta-tggtgtggccggtttaggtattggtttggagcaactgctggtgcgttttttgg 182  Q
    ||||||||||||||||||||||||  || || ||||||||| || |||||||||| || ||||||||| |||||||||    
T  22776232 gtttctgtttggttgtggcagctaggggcgttgccggtttacgttttggtttggaacagctgctggtgtgttttttgg 22776309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 114
Target Start/End: Original strand, 22776157 - 22776202
Alignment:
Q  69 tgggctggttcggctgagactgctgatgttagcagcagtttctgtt 114  Q
    |||||||||||||||||||||| || |||||||||| ||| |||||    
T  22776157 tgggctggttcggctgagactgttgctgttagcagctgttgctgtt 22776202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 210
Target Start/End: Complemental strand, 34351933 - 34351873
Alignment:
Q  150 ttggtttggagcaactgctggtgcgttttttggatggttgttgttgttggaattgatgatg 210  Q
    ||||| |||||||| || ||||| | ||||||| ||||||||| |||||||||||||||||    
T  34351933 ttggtgtggagcaaatgttggtgtggtttttgggtggttgttgctgttggaattgatgatg 34351873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University