View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5224-Insertion-1 (Length: 1072)
Name: NF5224-Insertion-1
Description: NF5224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5224-Insertion-1 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] scaffold0662 (1 HSPs) |
| |
|
| [»] chr3 (1 HSPs) |
| |
|
| [»] scaffold0011 (1 HSPs) |
| | |
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Alignment Details
Target: chr4 (Bit Score: 1029; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 1029; E-Value: 0
Query Start/End: Original strand, 14 - 1072
Target Start/End: Original strand, 47013546 - 47014606
Alignment:
| Q |
14 |
aagataataatactagtaacaataattaataaattacctaatagtagtacatcacaccaccacatatacccaaaaacaaattgtgcatcatccaaaagta |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47013546 |
aagataataatactagtaacaataattaataaattacctaatagtagtacatcacaccaccacatatacccaaaaacaaattgtgcatcatccaaaagta |
47013645 |
T |
|
| Q |
114 |
acaaattttgtattcaaaaatgagatcgacgagttgaatcagttctggctgtcgctcttccttccggtcccttctccgtctctctgttccaacaaccttc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47013646 |
acaaattttgtattcaaaaatgagatcgacgagttgaatcagttctggctgtcgctcttccttccggtcccttctccgtctctctgttccaacaaccttc |
47013745 |
T |
|
| Q |
214 |
cagcttcttcatcactctgttgagccttcttctgcgtctcggaggccttaagagcctgcaacttcgaatgattataatacgcaacccccaaaaacgccaa |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47013746 |
cagcttcttcatcactctgttgagccttcttctgcgtctcggaggccttaagagcctgcaacttcgaatgattataatacgcaacccccaaaaacgccaa |
47013845 |
T |
|
| Q |
314 |
cccataaccaatcaaattaatcggtgtcacggtatccttaatcaccgaccacgagaatgcaatcaacaaccaatccttaacaaccccagcaacattcata |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47013846 |
cccataaccaatcaaattaatcggtgtcacagtatccttaatcaccgaccacgagaatgcaatcaacaaccaatccttaacaaccccagcaacattcata |
47013945 |
T |
|
| Q |
414 |
gtcaaagccgacgtcttcccaaccaacaaaaacacagcaagattcaaagcaaaagcacacagcgaatttgtcccaaaaatcgcgaaatccaaatggaaac |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47013946 |
gtcaaagccgacgtcttcccaaccaacaaaaacacagcaagattcaaagcaaaagcacacagcgaatttgtcccaaaaatcgcgaaatccaaatggaaac |
47014045 |
T |
|
| Q |
514 |
tcgagttatccctcaatgaaggatactcaacaatcagccaaggaacagataaaaacaccaaacaacacggtgcaatgtaatacaacgaagtaatcggatt |
613 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47014046 |
tcgagttatccctcaacgaaggatactcaacaatcagccaaggaacagataaaaacaccaaacaacacggtgcaatgtaatacaacgaagtaatcggatt |
47014145 |
T |
|
| Q |
614 |
caacgaaatccccttagaattaagcaaaatctgaatcaaaaccaaacgtgtagcttcaaaagcaacagccataagctgaagtgtaacaccccaagtatca |
713 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47014146 |
caacgaaatccccttagaattaagcaaaatctgaatcaaaaccaaacgtgtagcttcaaaagcaacagccataagctgaagtgtaacaccccaagtatca |
47014245 |
T |
|
| Q |
714 |
aacttagcttcaccataagcagcaacagcaacaccaagcgaaatcgaaatcatattcgccatagtttcattcttaaaaccttctttcttaaacaaaacac |
813 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47014246 |
aacttagcttcaccataagcagcaacagcaacaccaagcgaaatcgaaatcatattcgccatagtttcattcttaaaaccttctttcttaaacaaaacac |
47014345 |
T |
|
| Q |
814 |
caatcgaataaacagcaacaggcataagcgctttgagcatctgaataaacgaaacagaaagataaatatacgcagaattcgaaaaccataacgaaagcga |
913 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47014346 |
caatcgaataaacagcaacaggcataagcgctttgagcatctgaataaacgaaacagaaagataaatatacgcagaattcgaaaaccataacgaaagcga |
47014445 |
T |
|
| Q |
914 |
gtaaagtgcaccgattggaacaacggatttgagatacagatcgcgtgacattgaaataggttcaacaagcttgaaaacacgaacgag-acgtaagcgagg |
1012 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
47014446 |
gtaaagtgcaccgattggaacaacggatttgagatacagatcgcgtgacattgaaacaggttcaacaagcttgaaaacacgaacgagaacgtaagcgagg |
47014545 |
T |
|
| Q |
1013 |
gaagaac-aaaagtcatgtgaatcatggttagagagatcgggtaaggccaattgtacatct |
1072 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47014546 |
gaagaacaaaaagccatgtgaatcatggttagagagatcgggtaaggccaattgtacatct |
47014606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0662 (Bit Score: 713; Significance: 0; HSPs: 1)
Name: scaffold0662
Description:
Target: scaffold0662; HSP #1
Raw Score: 713; E-Value: 0
Query Start/End: Original strand, 330 - 1072
Target Start/End: Original strand, 1 - 745
Alignment:
| Q |
330 |
ttaatcggtgtcacggtatccttaatcaccgaccacgagaatgcaatcaacaaccaatccttaacaaccccagcaacattcatagtcaaagccgacgtct |
429 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1 |
ttaatcggtgtcacagtatccttaatcaccgaccacgagaatgcaatcaacaaccaatccttaacaaccccagcaacattcatagtcaaagccgacgtct |
100 |
T |
|
| Q |
430 |
tcccaaccaacaaaaacacagcaagattcaaagcaaaagcacacagcgaatttgtcccaaaaatcgcgaaatccaaatggaaactcgagttatccctcaa |
529 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
101 |
tcccaaccaacaaaaacacagcaagattcaaagcaaaagcacacagcgaatttgtcccaaaaatcgcgaaatccaaatggaaactcgagttatccctcaa |
200 |
T |
|
| Q |
530 |
tgaaggatactcaacaatcagccaaggaacagataaaaacaccaaacaacacggtgcaatgtaatacaacgaagtaatcggattcaacgaaatcccctta |
629 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
201 |
cgaaggatactcaacaatcagccaaggaacagataaaaacaccaaacaacacggtgcaatgtaatacaacgaagtaatcggattcaacgaaatcccctta |
300 |
T |
|
| Q |
630 |
gaattaagcaaaatctgaatcaaaaccaaacgtgtagcttcaaaagcaacagccataagctgaagtgtaacaccccaagtatcaaacttagcttcaccat |
729 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
301 |
gaattaagcaaaatctgaatcaaaaccaaacgtgtagcttcaaaagcaacagccataagctgaagtgtaacaccccaagtatcaaacttagcttcaccat |
400 |
T |
|
| Q |
730 |
aagcagcaacagcaacaccaagcgaaatcgaaatcatattcgccatagtttcattcttaaaaccttctttcttaaacaaaacaccaatcgaataaacagc |
829 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
401 |
aagcagcaacagcaacaccaagcgaaatcgaaatcatattcgccatagtttcattcttaaaaccttctttcttaaacaaaacaccaatcgaataaacagc |
500 |
T |
|
| Q |
830 |
aacaggcataagcgctttgagcatctgaataaacgaaacagaaagataaatatacgcagaattcgaaaaccataacgaaagcgagtaaagtgcaccgatt |
929 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
501 |
aacaggcataagcgctttgagcatctgaataaacgaaacagaaagataaatatacgcagaattcgaaaaccataacgaaagcgagtaaagtgcaccgatt |
600 |
T |
|
| Q |
930 |
ggaacaacggatttgagatacagatcgcgtgacattgaaataggttcaacaagcttgaaaacacgaacgag-acgtaagcgagggaagaac-aaaagtca |
1027 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| || |
|
|
| T |
601 |
ggaacaacggatttgagatacagatcgcgtgacattgaaacaggttcaacaagcttgaaaacacgaacgagaacgtaagcgagggaagaacaaaaagcca |
700 |
T |
|
| Q |
1028 |
tgtgaatcatggttagagagatcgggtaaggccaattgtacatct |
1072 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
701 |
tgtgaatcatggttagagagatcgggtaaggccaattgtacatct |
745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 162; Significance: 7e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 7e-86
Query Start/End: Original strand, 258 - 1072
Target Start/End: Complemental strand, 49575497 - 49574681
Alignment:
| Q |
258 |
gccttaagagcctgcaacttcgaatgattataatacgcaacccccaaaaacgccaacccataaccaatcaaattaatcggtgtcacggtatccttaatca |
357 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||| || || ||||| || || | ||||| |||| ||||||||| ||||| || ||||||||||||| |
|
|
| T |
49575497 |
gccttaagtgcctgcaactttgaatgattataataagccacacccaagaaagcaagaccatacccaaacaaattaatgggtgtaacagtatccttaatca |
49575398 |
T |
|
| Q |
358 |
ccgaccacgagaatgcaatcaacaaccaatccttaacaaccccagcaacattcatagtcaaagccgacgtcttcccaaccaacaaaaacacagcaagatt |
457 |
Q |
| |
|
| ||| || || |||||||| | |||||| |||||||| |||||||||||||| |||||||| || || |||||||| | | ||| ||||||||||| |
|
|
| T |
49575397 |
cactccatgaaaaagcaatcaaaagccaatctttaacaacaccagcaacattcattgtcaaagcagatgttttcccaacaagaagaaaaacagcaagatt |
49575298 |
T |
|
| Q |
458 |
caaagcaaaagcacacagcgaatttgtcccaaaaatcgcgaaatccaaatggaaactcgagttatccctcaatgaaggatactcaacaatcagccaagga |
557 |
Q |
| |
|
||||||||| ||||||| ||||| ||||||||||| | ||||| ||||| ||||| || || || |||| ||||| || |||| | ||||||| |
|
|
| T |
49575297 |
caaagcaaatgcacacaaagaattagtcccaaaaatgacaaaatcaaaatgaaaacttgaattctctttcaaaattggatattccacaaggatccaagga |
49575198 |
T |
|
| Q |
558 |
acagataaaaacaccaaacaacacggtgcaatgtaatacaacgaagtaatcggattcaacgaaatccccttagaattaagcaaaatctgaatcaaaacca |
657 |
Q |
| |
|
||||| || || ||||||||||| ||||||| |||||||| || ||||| |||||||| |||||||| || || ||||||| || ||||||| ||||| |
|
|
| T |
49575197 |
acagacaagaaaaccaaacaacaaggtgcaacataatacaaggacgtaattggattcaatgaaatccctttggatgtaagcaagatttgaatcataacca |
49575098 |
T |
|
| Q |
658 |
aacgtgtagcttcaaaagcaacagccataagctgaagtgtaacaccccaagtatcaaacttagcttcaccataagcagcaacagcaacaccaagcgaaat |
757 |
Q |
| |
|
| | |||||||| ||||||||||| |||||| | |||| ||||| |||||||| ||||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
49575097 |
atctggtagcttcgaaagcaacagcaccaagctgtaaaataaccccccatgtatcaaatctagcttcaccataagcagcaacagcaacacccattgaaat |
49574998 |
T |
|
| Q |
758 |
cgaaatcatattcgccatagtttcattcttaaaaccttc-tttcttaaacaaaacaccaatcgaataaacagcaacaggcataagcgctttgagcatctg |
856 |
Q |
| |
|
|||| ||| || ||| || ||||| ||| || ||| ||||| | || ||| || || ||||||||||| ||||||||||| ||||| ||||| || |
|
|
| T |
49574997 |
ggaaagcatgttaaacatggtatcatttttataagattcttttctgagac-caacgccgatggaataaacagcgacaggcataagagctttaagcatttg |
49574899 |
T |
|
| Q |
857 |
aataaacgaaacagaaagataaatatacgcagaattcgaaaaccataacgaaagcgagtaaagtgcaccgattggaacaacggatttgagatacagatcg |
956 |
Q |
| |
|
|||||| |||||||| |||||||| || || ||||| || ||||| | ||||| || || ||||| ||||||||||||||||| || ||| | ||| |
|
|
| T |
49574898 |
aataaaagaaacagagagataaatgtaagcggaatttgataaccagagagaaagagaatagagtgctccgattggaacaacggaagagaaataaacttcg |
49574799 |
T |
|
| Q |
957 |
cgtgacattgaaataggttcaacaagcttgaaaacacgaacgagacgta-agcgagggaagaaca-aaagtcatgtgaatcatggttagagagatcgggt |
1054 |
Q |
| |
|
|| |||||||||| |||||||| | ||||| |||||||||||| | | ||| |||| | ||| |||| |||||| ||||| ||||| || || ||| |
|
|
| T |
49574798 |
cgagacattgaaacgggttcaacgaatttgaagacacgaacgagaagaatagctagggttgcacagaaagacatgtggatcattgttagggaaattggga |
49574699 |
T |
|
| Q |
1055 |
aaggccaattgtacatct |
1072 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
49574698 |
atggccaattgtacatct |
49574681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 128; Significance: 1e-65; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 282 - 925
Target Start/End: Complemental strand, 242768 - 242125
Alignment:
| Q |
282 |
tgattataatacgcaacccccaaaaacgccaacccataaccaatcaaattaatcggtgtcacggtatccttaatcaccgaccacgagaatgcaatcaaca |
381 |
Q |
| |
|
||||||||||| |||||||||||||| || | ||||||||||||||||| | ||||| || |||||||||||||| ||||| || |||||||| | || |
|
|
| T |
242768 |
tgattataataagcaacccccaaaaatgcaagtccataaccaatcaaattgagtggtgtaacagtatccttaatcactgaccaagaaaatgcaataagca |
242669 |
T |
|
| Q |
382 |
accaatccttaacaaccccagcaacattcatagtcaaagccgacgtcttcccaaccaacaaaaacacagcaagattcaaagcaaaagcacacagcgaatt |
481 |
Q |
| |
|
|||||||||| ||||| |||||||||||||| ||||||||||| ||||||||||| | ||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
242668 |
accaatccttcacaacaccagcaacattcatcgtcaaagccgaagtcttcccaacaagcaaaaacacagcaaggttcaaagcaaaagcacacaacgaatt |
242569 |
T |
|
| Q |
482 |
tgtcccaaaaatcgcgaaatccaaatggaaactcgagttatccctcaatgaaggatactcaacaatcagccaaggaacagataaaaacaccaaacaacac |
581 |
Q |
| |
|
| || |||| | ||||| ||| ||||| | ||||||||||| |||||||||| | || | |||||||| || ||||| ||||||||||| |
|
|
| T |
242568 |
acttccgaaaacccaaaaatcaaaactcaaacttgctttatccctcaacaaaggatactccataacgaaccaaggaaacgacaaaaaaaccaaacaacaa |
242469 |
T |
|
| Q |
582 |
ggtgcaatgtaatacaacgaagtaatcggattcaacgaaatccccttagaattaagcaaaatctgaatcaaaaccaaacgtgtagcttcaaaagcaacag |
681 |
Q |
| |
|
|| |||||||| || | ||| ||||| ||||||||| |||||| || || || | | ||| ||||| |||||||| | || |||||||| || |||| |
|
|
| T |
242468 |
ggagcaatgtagtaaagcgaggtaataggattcaacttaatccctttcgagttcaaaagaatttgaattaaaaccaacctcgtggcttcaaacgctacag |
242369 |
T |
|
| Q |
682 |
ccataagctgaagtgtaacaccccaagtatcaaacttagcttcaccataagcagcaacagcaacaccaagcgaaatcgaaatcatattcgccatagtttc |
781 |
Q |
| |
|
|||| ||||| || |||||||| | ||||||||| ||||| ||||| ||||| ||||| || ||||| || || |||| ||| || ||| ||||| |
|
|
| T |
242368 |
ccatgagctgtagcgtaacaccaaagacatcaaacttggcttcgccataggcagctacagcgacgccaagtgatatagaaaccatgttgatcatggtttc |
242269 |
T |
|
| Q |
782 |
attcttaaaaccttctttcttaaacaaaacaccaatcgaataaacagcaacaggcataagcgctttgagcatctgaataaacgaaacagaaagataaata |
881 |
Q |
| |
|
|| ||||| |||||| ||||| |||| || || || ||||| || || |||||||| ||||| ||||| ||||| || ||||| || | ||||| |
|
|
| T |
242268 |
ttttttaaacgattcttttttaaaagaaaccccgatggagtaaacggccacgggcataagagcttttagcatttgaatgaatgaaactgacaagtaaatg |
242169 |
T |
|
| Q |
882 |
tacgcagaattcgaaaaccataacgaaagcgagtaaagtgcacc |
925 |
Q |
| |
|
|| ||||| || || ||||| | ||||| |||||||||||||| |
|
|
| T |
242168 |
taagcagagtttgagaaccaaagggaaagagagtaaagtgcacc |
242125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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