View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5224-Insertion-3 (Length: 658)

Name: NF5224-Insertion-3
Description: NF5224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5224-Insertion-3
NF5224-Insertion-3
[»] chr8 (12 HSPs)
chr8 (121-413)||(40841624-40841915)
chr8 (121-399)||(41958567-41958833)
chr8 (559-655)||(40841331-40841427)
chr8 (9-128)||(41958877-41958988)
chr8 (9-76)||(40842107-40842174)
chr8 (566-641)||(22816219-22816294)
chr8 (74-128)||(40841959-40842013)
chr8 (438-490)||(40841496-40841548)
chr8 (419-490)||(35839223-35839297)
chr8 (596-652)||(35840599-35840657)
chr8 (419-487)||(22816373-22816444)
chr8 (382-410)||(22816561-22816589)
[»] chr7 (10 HSPs)
chr7 (121-392)||(29587313-29587584)
chr7 (169-413)||(9993078-9993322)
chr7 (9-128)||(9992936-9993047)
chr7 (9-128)||(29587158-29587269)
chr7 (561-632)||(9993542-9993613)
chr7 (419-490)||(11036375-11036449)
chr7 (561-641)||(11036215-11036304)
chr7 (561-623)||(3691764-3691826)
chr7 (369-413)||(15874156-15874200)
chr7 (381-413)||(12196785-12196817)
[»] chr3 (5 HSPs)
chr3 (559-658)||(9104435-9104536)
chr3 (561-641)||(17542570-17542650)
chr3 (435-487)||(17542724-17542777)
chr3 (419-490)||(9104294-9104368)
chr3 (381-413)||(5004939-5004971)
[»] chr4 (2 HSPs)
chr4 (561-641)||(69540-69620)
chr4 (419-487)||(69395-69466)
[»] chr2 (5 HSPs)
chr2 (561-641)||(44788761-44788841)
chr2 (418-490)||(1193719-1193794)
chr2 (572-658)||(1193862-1193949)
chr2 (438-487)||(44788637-44788687)
chr2 (382-413)||(32735511-32735542)
[»] chr5 (4 HSPs)
chr5 (561-641)||(6308912-6308991)
chr5 (419-487)||(6308767-6308838)
chr5 (369-413)||(536717-536761)
chr5 (381-413)||(27026620-27026652)
[»] chr1 (4 HSPs)
chr1 (566-641)||(6836163-6836238)
chr1 (369-413)||(6835939-6835983)
chr1 (452-487)||(6836056-6836091)
chr1 (382-413)||(21264809-21264840)
[»] scaffold0013 (2 HSPs)
scaffold0013 (561-622)||(242957-243017)
scaffold0013 (438-490)||(243088-243141)
[»] scaffold0120 (1 HSPs)
scaffold0120 (381-413)||(2689-2721)
[»] chr6 (3 HSPs)
chr6 (381-413)||(11166631-11166663)
chr6 (369-413)||(34636174-34636218)
chr6 (382-413)||(23260797-23260828)
[»] scaffold0413 (1 HSPs)
scaffold0413 (382-413)||(8840-8871)
[»] scaffold0002 (1 HSPs)
scaffold0002 (372-413)||(356928-356969)


Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 121 - 413
Target Start/End: Complemental strand, 40841915 - 40841624
Alignment:
Q  121 tattttctatgttcacgaaagttattttctgccgtgaacaaacactagaaatcacgccactccctcacattcataccaaccccttgtgttctaatagtaa 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40841915 tattttctatgttcacgaaagttattttctgccgtgaacaaacactagaaatcacgccactccctcacattcataccaaccccttgtgttctaatagtaa 40841816  T
Q  221 acctctttgttcgaagaatatttatcatcttggaaccgtaggcaaaaccacccatctgcagcatactcaatttcgtgcaagcctaaagaaacatgaagtg 320  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40841815 acctctttgttcgaagaatatttatcatcttggaaccgtaagcaaaaccacccatctgcagcatactcaatttcgtgcaagcctaaagaaacatgaagtg 40841716  T
Q  321 tttgttcgtgcgtttggagattctctaaaagcactaagttgaaaggggagaaaagggtctaaggtaagggctttttccccatacgttcttact 413  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  40841715 tttgttcgtgcgtttggagattctctaaaaacactaagttgaaaggggagaaaagggtctaatgtaagggcttttt-cccatacgttcttact 40841624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 121 - 399
Target Start/End: Complemental strand, 41958833 - 41958567
Alignment:
Q  121 tattttctatgttcacgaaagttattttctgccgtgaacaaacactagaaatcacgccactccctcacattcataccaaccccttgtgttctaatagtaa 220  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41958833 tattttctatgttcacgaaaattattttctgccgtgaacaaacactagaaatcacgccactccctcacattcataccaaccccttgtgttctaatagtaa 41958734  T
Q  221 acctctttgttcgaagaatatttatcatcttggaaccgtaggcaaaaccacccatctgcagcatactcaatttcgtgcaagcctaaagaaacatgaagtg 320  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  41958733 acctctttgttcgaagaatatttatcatcttggaaccgtaagcaaaaccacccatctgcagcacactcaatttcgtgcaagcctaaagaaacatgaagtg 41958634  T
Q  321 tttgttcgtgcgtttggagattctctaaaagcactaagttgaaaggggagaaaagggtctaaggtaagggctttttccc 399  Q
    |||| |||||            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41958633 tttgatcgtg------------ctctaaaagcactaagttgaaaggggagaaaagggtctaaggtaagggctttttccc 41958567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 559 - 655
Target Start/End: Complemental strand, 40841427 - 40841331
Alignment:
Q  559 actaaggaaaatgaaaagagatgaaaatgtgaatttgattgaaaagactgtttttgattatgttcttggtgatgtgagatataattatttctgtatg 655  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  40841427 actaaggaaaatgaaaagagatgaaaatgtgagtttgattgaaaagactatttttgatcatgttcttggtgatgtgagatataattatttctgtatg 40841331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 9 - 128
Target Start/End: Complemental strand, 41958988 - 41958877
Alignment:
Q  9 cttcctttgttcaattacaattttgattatagatttatagtattcaattacttgtctcattatagttatgatcaacatctccttaatttcatcctctttt 108  Q
    ||||||||||||||||||||||||||||| ||        ||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||    
T  41958988 cttcctttgttcaattacaattttgattacag--------tattcaattacctgtctcattataattatgatcaacatctccttaatttcctcctctttt 41958897  T
Q  109 tccctcgacccctattttct 128  Q
    ||||||||||||||||||||    
T  41958896 tccctcgacccctattttct 41958877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 40842174 - 40842107
Alignment:
Q  9 cttcctttgttcaattacaattttgattatagatttatagtattcaattacttgtctcattatagtta 76  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40842174 cttcctttgttcaattacaattttgattatagatttatagtattcaattacttgtctcattatagtta 40842107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 566 - 641
Target Start/End: Complemental strand, 22816294 - 22816219
Alignment:
Q  566 aaaatgaaaagagatgaaaatgtgaatttgattgaaaagactgtttttgattatgttcttggtgatgtgagatata 641  Q
    ||||||||||||||||||||||||| | | |||||||||| |||||||||| |||||| |||||||||||||||||    
T  22816294 aaaatgaaaagagatgaaaatgtgagtcttattgaaaagattgtttttgatcatgttcatggtgatgtgagatata 22816219  T

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Target: chr8; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 74 - 128
Target Start/End: Complemental strand, 40842013 - 40841959
Alignment:
Q  74 ttatgatcaacatctccttaatttcatcctctttttccctcgacccctattttct 128  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  40842013 ttataatcaacatctccttaatttcctcctctttttccctcgacccctattttct 40841959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 438 - 490
Target Start/End: Complemental strand, 40841548 - 40841496
Alignment:
Q  438 ttattttaattgagtttatatgatagttgtgtatgatgcgatgtggaatgata 490  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  40841548 ttattttagttgagtttatatgatagttgtgtatgatgcgacgtggaatgata 40841496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 419 - 490
Target Start/End: Original strand, 35839223 - 35839297
Alignment:
Q  419 tctaatattttataaa--tggttattttaattgagttt-atatgatagttgtgtatgatgcgatgtggaatgata 490  Q
    |||||||||||||||   || ||||||||||||||||| ||||||||||||||||||||| |||| |||||||||    
T  35839223 tctaatattttataagagtgattattttaattgagttttatatgatagttgtgtatgatgtgatgcggaatgata 35839297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 596 - 652
Target Start/End: Original strand, 35840599 - 35840657
Alignment:
Q  596 attgaaaagactgtttttgattatgttcttggtgatgtgag--atataattatttctgt 652  Q
    |||||||||| ||||||||||  ||||| ||||||||||||  ||||||||||||||||    
T  35840599 attgaaaagattgtttttgatcgtgttcatggtgatgtgagatatataattatttctgt 35840657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 419 - 487
Target Start/End: Complemental strand, 22816444 - 22816373
Alignment:
Q  419 tctaatattttataaa--tggttattttaattgagttt-atatgatagttgtgtatgatgcgatgtggaatg 487  Q
    |||||||||||||||   || |||||||||| |||||| ||||||||||||| ||| ||| |||||||||||    
T  22816444 tctaatattttataagagtgattattttaatcgagttttatatgatagttgtatataatgtgatgtggaatg 22816373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 382 - 410
Target Start/End: Complemental strand, 22816589 - 22816561
Alignment:
Q  382 aggtaagggctttttccccatacgttctt 410  Q
    |||||||||||||||||||||||||||||    
T  22816589 aggtaagggctttttccccatacgttctt 22816561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 121 - 392
Target Start/End: Original strand, 29587313 - 29587584
Alignment:
Q  121 tattttctatgttcacgaaagttattttctgccgtgaacaaacactagaaatcacgccactccctcacattcataccaaccccttgtgttctaatagtaa 220  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||    
T  29587313 tattttctatgttcacgaaagttattttctgccgtgagcaaccactagaaatcatgccactccctcacattcataccaaccccttatgttgtaatagtaa 29587412  T
Q  221 acctctttgttcgaagaatatttatcatcttggaaccgtaggcaaaaccacccatctgcagcatactcaatttcgtgcaagcctaaagaaacatgaagtg 320  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  29587413 acctctttgttcgaagaatatttatcatcttggaaccgtaagcaaaaccacccatctgcaacatactcaatttcgtgcaagcctaaagaaacatgaagtg 29587512  T
Q  321 tttgttcgtgcgtttggagattctctaaaagcactaagttgaaaggggagaaaagggtctaaggtaagggct 392  Q
    || ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  29587513 ttagttcgtgcgtttgaagattctctaaaagcactaagttgaaaggggagaaaagcgtctaaggtaagggct 29587584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 169 - 413
Target Start/End: Original strand, 9993078 - 9993322
Alignment:
Q  169 aaatcacgccactccctcacattcataccaaccccttgtgttctaatagtaaacctctttgttcgaagaatatttatcatcttggaaccgtaggcaaaac 268  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  9993078 aaatcacgccactccctcacattcataacaaccccttgtgttctgatagtaaacctctttgttcgaagaatatttatcatcttggaaccataagcaaaac 9993177  T
Q  269 cacccatctgcagcatactcaatttcgtgcaagcctaaagaaacatgaagtgtttgttcgtgcgtttggagattctctaaaagcactaagttgaaagggg 368  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9993178 cacccatctgcagcatactcaatttcgtgcaagcctaaagaaacatgaagtgtttgttcgtgcatttggagattctctaaaagcactaagttgaaagggg 9993277  T
Q  369 agaaaagggtctaaggtaagggctttttccccatacgttcttact 413  Q
    ||||||||||||||||||||||||||||||||| |||||||||||    
T  9993278 agaaaagggtctaaggtaagggctttttccccacacgttcttact 9993322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 9 - 128
Target Start/End: Original strand, 9992936 - 9993047
Alignment:
Q  9 cttcctttgttcaattacaattttgattatagatttatagtattcaattacttgtctcattatagttatgatcaacatctccttaatttcatcctctttt 108  Q
    ||||||||||||||||||||||||||||| ||        |||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||    
T  9992936 cttcctttgttcaattacaattttgattacag--------tattcaattacttgtctcattataattataatcaacatctccttaatttcctcctctttt 9993027  T
Q  109 tccctcgacccctattttct 128  Q
    ||||||||||||||||||||    
T  9993028 tccctcgacccctattttct 9993047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 9 - 128
Target Start/End: Original strand, 29587158 - 29587269
Alignment:
Q  9 cttcctttgttcaattacaattttgattatagatttatagtattcaattacttgtctcattatagttatgatcaacatctccttaatttcatcctctttt 108  Q
    ||||||||||||||||||||||||||||| |         |||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||    
T  29587158 cttcctttgttcaattacaattttgattacaa--------tattcaattacttgtctcattataattatgatcaacttctccttaatttcctcctctttt 29587249  T
Q  109 tccctcgacccctattttct 128  Q
    ||||||||||||||||||||    
T  29587250 tccctcgacccctattttct 29587269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 561 - 632
Target Start/End: Original strand, 9993542 - 9993613
Alignment:
Q  561 taaggaaaatgaaaagagatgaaaatgtgaatttgattgaaaagactgtttttgattatgttcttggtgatg 632  Q
    |||||||||||||||||||||||||||||| ||| |||||||||| |||||||||| |||||| ||||||||    
T  9993542 taaggaaaatgaaaagagatgaaaatgtgagttttattgaaaagattgtttttgatcatgttcatggtgatg 9993613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 419 - 490
Target Start/End: Complemental strand, 11036449 - 11036375
Alignment:
Q  419 tctaatattttataa--atggttattttaattgagttt-atatgatagttgtgtatgatgcgatgtggaatgata 490  Q
    |||||||||||||||  ||| ||||||||||||||||| ||||||||||||||| ||||| |||| |||||||||    
T  11036449 tctaatattttataagaatgattattttaattgagttttatatgatagttgtgtgtgatgtgatgcggaatgata 11036375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 561 - 641
Target Start/End: Complemental strand, 11036304 - 11036215
Alignment:
Q  561 taaggaaaatgaaaagagatgaaaatgtgaatttg---------attgaaaagactgtttttgattatgttcttggtgatgtgagatata 641  Q
    |||||||||||||||||||||||||||||| |||          |||||||||| |||||||||| |||||| |||||||||||||||||    
T  11036304 taaggaaaatgaaaagagatgaaaatgtgagttttcaatgtttcattgaaaagattgtttttgatcatgttcatggtgatgtgagatata 11036215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 561 - 623
Target Start/End: Original strand, 3691764 - 3691826
Alignment:
Q  561 taaggaaaatgaaaagagatgaaaatgtgaatttgattgaaaagactgtttttgattatgttc 623  Q
    ||||||||  |||||||||||||| ||||| ||| |||||||||| |||||||||| ||||||    
T  3691764 taaggaaagggaaaagagatgaaagtgtgagttttattgaaaagattgtttttgatcatgttc 3691826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 369 - 413
Target Start/End: Complemental strand, 15874200 - 15874156
Alignment:
Q  369 agaaaagggtctaaggtaagggctttttccccatacgttcttact 413  Q
    ||||||| ||||  |||||||||||||||||||||||||||||||    
T  15874200 agaaaagtgtctcgggtaagggctttttccccatacgttcttact 15874156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 381 - 413
Target Start/End: Complemental strand, 12196817 - 12196785
Alignment:
Q  381 aaggtaagggctttttccccatacgttcttact 413  Q
    |||||||||||||||||||||||| ||||||||    
T  12196817 aaggtaagggctttttccccatacattcttact 12196785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 5e-27; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 559 - 658
Target Start/End: Original strand, 9104435 - 9104536
Alignment:
Q  559 actaaggaaaatgaaaagagatgaaaatgtgaatttgattgaaaagactgtttttgattatgttcttggtgatgtgag--atataattatttctgtatgg 656  Q
    ||||| ||||||||||||||||| |||||||| |||||||||||||||| |||| ||| |||||||||||||||||||  |||||||||||||||| |||    
T  9104435 actaatgaaaatgaaaagagatggaaatgtgagtttgattgaaaagactattttggatcatgttcttggtgatgtgagatatataattatttctgtgtgg 9104534  T
Q  657 tg 658  Q
    ||    
T  9104535 tg 9104536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 561 - 641
Target Start/End: Complemental strand, 17542650 - 17542570
Alignment:
Q  561 taaggaaaatgaaaagagatgaaaatgtgaatttgattgaaaagactgtttttgattatgttcttggtgatgtgagatata 641  Q
    |||||||||||||||||||||||||||||| | | |||||||||| |||||||||| |||||| ||||||||| |||||||    
T  17542650 taaggaaaatgaaaagagatgaaaatgtgagtcttattgaaaagattgtttttgatcatgttcatggtgatgttagatata 17542570  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 435 - 487
Target Start/End: Complemental strand, 17542777 - 17542724
Alignment:
Q  435 tggttattttaattgagttt-atatgatagttgtgtatgatgcgatgtggaatg 487  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  17542777 tggttattttaattgagttttatatgatagttgtgtatgatgtgatgtggaatg 17542724  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 419 - 490
Target Start/End: Original strand, 9104294 - 9104368
Alignment:
Q  419 tctaatattttataaa--tggttattttaattgagt-ttatatgatagttgtgtatgatgcgatgtggaatgata 490  Q
    |||||||||||||||   || ||||||||||||||| |||||||||||||||||||| || ||||||||||||||    
T  9104294 tctaatattttataagattgattattttaattgagtcttatatgatagttgtgtatgttgtgatgtggaatgata 9104368  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 381 - 413
Target Start/End: Complemental strand, 5004971 - 5004939
Alignment:
Q  381 aaggtaagggctttttccccatacgttcttact 413  Q
    |||||||||||||||||||||||||||||||||    
T  5004971 aaggtaagggctttttccccatacgttcttact 5004939  T

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Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 561 - 641
Target Start/End: Original strand, 69540 - 69620
Alignment:
Q  561 taaggaaaatgaaaagagatgaaaatgtgaatttgattgaaaagactgtttttgattatgttcttggtgatgtgagatata 641  Q
    |||||||||||||||||||||||||||||| | | |||||||||| |||||||||| |||||| |||||||||||||||||    
T  69540 taaggaaaatgaaaagagatgaaaatgtgagtcttattgaaaagattgtttttgatcatgttcatggtgatgtgagatata 69620  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 419 - 487
Target Start/End: Original strand, 69395 - 69466
Alignment:
Q  419 tctaatattttataaa--tggttattttaattgagttt-atatgatagttgtgtatgatgcgatgtggaatg 487  Q
    ||||||||||||||||  || ||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  69395 tctaatattttataaaagtgattattttaattgagttttatatgatagttgtgtatgatgtgatgtggaatg 69466  T

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Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 561 - 641
Target Start/End: Original strand, 44788761 - 44788841
Alignment:
Q  561 taaggaaaatgaaaagagatgaaaatgtgaatttgattgaaaagactgtttttgattatgttcttggtgatgtgagatata 641  Q
    |||| ||||||||||||||||||||||||| | | |||||||||| |||||||||| |||||| |||||||||||||||||    
T  44788761 taagaaaaatgaaaagagatgaaaatgtgagtcttattgaaaagattgtttttgatcatgttcatggtgatgtgagatata 44788841  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 418 - 490
Target Start/End: Original strand, 1193719 - 1193794
Alignment:
Q  418 gtctaatattttataaa--tggttattttaattgagttt-atatgatagttgtgtatgatgcgatgtggaatgata 490  Q
    ||||||||||||||||   || ||||||||||||||||| ||||||||||||||||||||| |||| |||||||||    
T  1193719 gtctaatattttataagagtgattattttaattgagttttatatgatagttgtgtatgatgtgatgcggaatgata 1193794  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 572 - 658
Target Start/End: Original strand, 1193862 - 1193949
Alignment:
Q  572 aaaagagatgaaaatgtgaatttgattgaaaagactgtttttgattatgttcttggtgatgtgag--atataattatttctgtatggtg 658  Q
    ||||||||||||||| |||  || |||||||||| ||||| |||| |||||| ||||||||||||  |||||||||||||||| |||||    
T  1193862 aaaagagatgaaaatatgagatt-attgaaaagattgtttatgatcatgttcatggtgatgtgagatatataattatttctgtgtggtg 1193949  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 438 - 487
Target Start/End: Original strand, 44788637 - 44788687
Alignment:
Q  438 ttattttaattgagttt-atatgatagttgtgtatgatgcgatgtggaatg 487  Q
    ||||||||||||||||| ||| ||||||||||||||||| |||||||||||    
T  44788637 ttattttaattgagttttataagatagttgtgtatgatgtgatgtggaatg 44788687  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 413
Target Start/End: Complemental strand, 32735542 - 32735511
Alignment:
Q  382 aggtaagggctttttccccatacgttcttact 413  Q
    ||||||||||||||||||||||||||||||||    
T  32735542 aggtaagggctttttccccatacgttcttact 32735511  T

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Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 561 - 641
Target Start/End: Original strand, 6308912 - 6308991
Alignment:
Q  561 taaggaaaatgaaaagagatgaaaatgtgaatttgattgaaaagactgtttttgattatgttcttggtgatgtgagatata 641  Q
    |||||||||||||||||||||||||||||| | | |||||||||| || ||||||| |||||| |||||||||||||||||    
T  6308912 taaggaaaatgaaaagagatgaaaatgtgagtcttattgaaaagattg-ttttgatcatgttcatggtgatgtgagatata 6308991  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 419 - 487
Target Start/End: Original strand, 6308767 - 6308838
Alignment:
Q  419 tctaatattttataaa--tggttattttaattgagttt-atatgatagttgtgtatgatgcgatgtggaatg 487  Q
    ||||||||||||||||  || ||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  6308767 tctaatattttataaaagtgattattttaattgagttttatatgatagttgtgtatgatgtgatgtggaatg 6308838  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 369 - 413
Target Start/End: Original strand, 536717 - 536761
Alignment:
Q  369 agaaaagggtctaaggtaagggctttttccccatacgttcttact 413  Q
    ||||||| ||||  |||||||||||||||||||||||||||||||    
T  536717 agaaaagtgtctcgggtaagggctttttccccatacgttcttact 536761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 381 - 413
Target Start/End: Original strand, 27026620 - 27026652
Alignment:
Q  381 aaggtaagggctttttccccatacgttcttact 413  Q
    ||||||||||||||||||||||||||| |||||    
T  27026620 aaggtaagggctttttccccatacgtttttact 27026652  T

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Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 566 - 641
Target Start/End: Original strand, 6836163 - 6836238
Alignment:
Q  566 aaaatgaaaagagatgaaaatgtgaatttgattgaaaagactgtttttgattatgttcttggtgatgtgagatata 641  Q
    |||| |||||||||||||||||||| | | |||||||||| |||||||||| || ||| |||||||||||||||||    
T  6836163 aaaaggaaaagagatgaaaatgtgagtcttattgaaaagattgtttttgatcatattcatggtgatgtgagatata 6836238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 369 - 413
Target Start/End: Original strand, 6835939 - 6835983
Alignment:
Q  369 agaaaagggtctaaggtaagggctttttccccatacgttcttact 413  Q
    ||||||| ||||  |||||||||||||||||||||||||||||||    
T  6835939 agaaaagtgtctcgggtaagggctttttccccatacgttcttact 6835983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 452 - 487
Target Start/End: Original strand, 6836056 - 6836091
Alignment:
Q  452 tttatatgatagttgtgtatgatgcgatgtggaatg 487  Q
    |||||||||||||||||||||||| |||||||||||    
T  6836056 tttatatgatagttgtgtatgatgtgatgtggaatg 6836091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 413
Target Start/End: Complemental strand, 21264840 - 21264809
Alignment:
Q  382 aggtaagggctttttccccatacgttcttact 413  Q
    ||||||||||||||||||||||||||||||||    
T  21264840 aggtaagggctttttccccatacgttcttact 21264809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 561 - 622
Target Start/End: Complemental strand, 243017 - 242957
Alignment:
Q  561 taaggaaaatgaaaagagatgaaaatgtgaatttgattgaaaagactgtttttgattatgtt 622  Q
    |||||||||||||||||||||||||||||| ||| |||| ||||| |||||||||| |||||    
T  243017 taaggaaaatgaaaagagatgaaaatgtgagttttattg-aaagattgtttttgatcatgtt 242957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 438 - 490
Target Start/End: Complemental strand, 243141 - 243088
Alignment:
Q  438 ttattttaattgagttt-atatgatagttgtgtatgatgcgatgtggaatgata 490  Q
    ||||||||||||||||| ||||||||||||||||||||| |||| |||||||||    
T  243141 ttattttaattgagttttatatgatagttgtgtatgatgtgatgcggaatgata 243088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 381 - 413
Target Start/End: Complemental strand, 2721 - 2689
Alignment:
Q  381 aaggtaagggctttttccccatacgttcttact 413  Q
    |||||||||||||||||||||||||||||||||    
T  2721 aaggtaagggctttttccccatacgttcttact 2689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 381 - 413
Target Start/End: Complemental strand, 11166663 - 11166631
Alignment:
Q  381 aaggtaagggctttttccccatacgttcttact 413  Q
    |||||||||||||||||||||||||||||||||    
T  11166663 aaggtaagggctttttccccatacgttcttact 11166631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 369 - 413
Target Start/End: Original strand, 34636174 - 34636218
Alignment:
Q  369 agaaaagggtctaaggtaagggctttttccccatacgttcttact 413  Q
    ||||||| ||||  |||||||||||||||||||||||||||||||    
T  34636174 agaaaagtgtctcgggtaagggctttttccccatacgttcttact 34636218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 413
Target Start/End: Complemental strand, 23260828 - 23260797
Alignment:
Q  382 aggtaagggctttttccccatacgttcttact 413  Q
    ||||||||||||||||||||||||||||||||    
T  23260828 aggtaagggctttttccccatacgttcttact 23260797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 413
Target Start/End: Original strand, 8840 - 8871
Alignment:
Q  382 aggtaagggctttttccccatacgttcttact 413  Q
    ||||||||||||||||||||||||||||||||    
T  8840 aggtaagggctttttccccatacgttcttact 8871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 413
Target Start/End: Complemental strand, 356969 - 356928
Alignment:
Q  372 aaagggtctaaggtaagggctttttccccatacgttcttact 413  Q
    |||| |||||||||||||  ||||||||||||||||||||||    
T  356969 aaagcgtctaaggtaaggattttttccccatacgttcttact 356928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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