View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5224-Insertion-4 (Length: 326)

Name: NF5224-Insertion-4
Description: NF5224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5224-Insertion-4
NF5224-Insertion-4
[»] chr7 (2 HSPs)
chr7 (8-326)||(5812181-5812506)
chr7 (94-132)||(39879379-39879417)
[»] scaffold0518 (1 HSPs)
scaffold0518 (94-133)||(8962-9001)
[»] chr3 (2 HSPs)
chr3 (94-132)||(9007837-9007875)
chr3 (94-132)||(12516177-12516215)
[»] scaffold0022 (1 HSPs)
scaffold0022 (94-132)||(69285-69323)
[»] chr8 (2 HSPs)
chr8 (94-132)||(18322935-18322973)
chr8 (100-132)||(5859813-5859845)
[»] chr4 (2 HSPs)
chr4 (94-132)||(12683777-12683815)
chr4 (10-119)||(7920581-7920690)
[»] chr1 (2 HSPs)
chr1 (94-132)||(25408088-25408126)
chr1 (94-132)||(26977732-26977770)
[»] chr2 (1 HSPs)
chr2 (63-132)||(45203656-45203725)
[»] chr6 (1 HSPs)
chr6 (96-132)||(30654585-30654621)
[»] chr5 (1 HSPs)
chr5 (96-132)||(30808670-30808706)


Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 8 - 326
Target Start/End: Complemental strand, 5812506 - 5812181
Alignment:
Q  8 ggtcggtccggtgacgatcaatgaatctggttggttgtccacggtgcttcggtacggcgaaggctgagtcttcacggttgaggtgcaaggtgcctgcaga 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||| ||||| |    
T  5812506 ggtcggtccggtgacgatcaatgaatctggttggttgtccacggtgcttcggtacggcgaaagctgagtcttcacggatgaggtgtaaggtgtctgcaaa 5812407  T
Q  108 cacgttaacactccaacgctcaagtaaaaatcttaaatagacggttaactgtaggatgtgatagaagtaaagtttaccttga-------gagtaaacgag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||       |||||||||||    
T  5812406 cacgttaacactccaacgctcaagtaaaaatcttaaatagacggttaagtgtaggatgtgataaaagtaaagtttaccttgagagttgagagtaaacgag 5812307  T
Q  201 gaatcactcttatataggcgcgaagacgcatcgctgcctccattatatacaacgtgaatggagaagatcgttggtgatgatctggacggtcgagagggag 300  Q
    ||||||| ||||||||||| ||||||||||| ||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5812306 gaatcacccttatataggcacgaagacgcattgctgcctccatgatatacggcgtgaatggagaagatcgttggtgatgatctggacggccgagagggag 5812207  T
Q  301 ttggggcatgtgtctatgcggttgtc 326  Q
    ||||||| ||||||||||||||||||    
T  5812206 ttggggcgtgtgtctatgcggttgtc 5812181  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 132
Target Start/End: Original strand, 39879379 - 39879417
Alignment:
Q  94 aaggtgcctgcagacacgttaacactccaacgctcaagt 132  Q
    ||||||||||||||||||||||||||  |||||||||||    
T  39879379 aaggtgcctgcagacacgttaacactttaacgctcaagt 39879417  T

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Target: scaffold0518 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0518
Description:

Target: scaffold0518; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 133
Target Start/End: Original strand, 8962 - 9001
Alignment:
Q  94 aaggtgcctgcagacacgttaacactccaacgctcaagta 133  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  8962 aaggtgcctgcagacacgttagcactccaacgctcaagta 9001  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 9007875 - 9007837
Alignment:
Q  94 aaggtgcctgcagacacgttaacactccaacgctcaagt 132  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  9007875 aaggtgcctgcaggcacgttaacactccaacgctcaagt 9007837  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 132
Target Start/End: Original strand, 12516177 - 12516215
Alignment:
Q  94 aaggtgcctgcagacacgttaacactccaacgctcaagt 132  Q
    ||||||||||||||||||||| |||||| ||||||||||    
T  12516177 aaggtgcctgcagacacgttagcactccgacgctcaagt 12516215  T

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Target: scaffold0022 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 69323 - 69285
Alignment:
Q  94 aaggtgcctgcagacacgttaacactccaacgctcaagt 132  Q
    ||||||||||||| ||||||| |||||||||||||||||    
T  69323 aaggtgcctgcaggcacgttagcactccaacgctcaagt 69285  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 132
Target Start/End: Original strand, 18322935 - 18322973
Alignment:
Q  94 aaggtgcctgcagacacgttaacactccaacgctcaagt 132  Q
    ||||||| |||||||| ||||||||||||||||||||||    
T  18322935 aaggtgcatgcagacatgttaacactccaacgctcaagt 18322973  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 132
Target Start/End: Original strand, 5859813 - 5859845
Alignment:
Q  100 cctgcagacacgttaacactccaacgctcaagt 132  Q
    ||||||||||||||| |||||||||||||||||    
T  5859813 cctgcagacacgttagcactccaacgctcaagt 5859845  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 132
Target Start/End: Original strand, 12683777 - 12683815
Alignment:
Q  94 aaggtgcctgcagacacgttaacactccaacgctcaagt 132  Q
    ||||||||||||| ||||||| |||||||||||||||||    
T  12683777 aaggtgcctgcaggcacgttagcactccaacgctcaagt 12683815  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 119
Target Start/End: Original strand, 7920581 - 7920690
Alignment:
Q  10 tcggtccggtgacgatcaatgaatctggttggttgtccacggtgcttcggtacggcgaaggctgagtcttcacggttgaggtgcaaggtgcctgcagaca 109  Q
    ||||| ||||||||||| |||| ||| | |||||||  ||| |||| ||||  |||| |   |||||||||||||| |||||| ||||||  ||||||||    
T  7920581 tcggttcggtgacgatcgatgagtcttgatggttgtttacgatgctccggtgtggcggattttgagtcttcacggtggaggtgaaaggtgagtgcagaca 7920680  T
Q  110 cgttaacact 119  Q
    ||||| ||||    
T  7920681 cgttagcact 7920690  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 132
Target Start/End: Original strand, 25408088 - 25408126
Alignment:
Q  94 aaggtgcctgcagacacgttaacactccaacgctcaagt 132  Q
    ||||||||||||||||||||| |||||||| ||||||||    
T  25408088 aaggtgcctgcagacacgttagcactccaatgctcaagt 25408126  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 132
Target Start/End: Original strand, 26977732 - 26977770
Alignment:
Q  94 aaggtgcctgcagacacgttaacactccaacgctcaagt 132  Q
    ||||||||||||| ||||||| |||||||||||||||||    
T  26977732 aaggtgcctgcaggcacgttagcactccaacgctcaagt 26977770  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 132
Target Start/End: Complemental strand, 45203725 - 45203656
Alignment:
Q  63 ggcgaaggctgagtcttcacggttgaggtgcaaggtgcctgcagacacgttaacactccaacgctcaagt 132  Q
    ||||| || |||||||||||||| |||| | | |||| |||| ||||| |||||||| ||||||||||||    
T  45203725 ggcgatggttgagtcttcacggtggaggagaagggtgtctgctgacacattaacacttcaacgctcaagt 45203656  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 30654585 - 30654621
Alignment:
Q  96 ggtgcctgcagacacgttaacactccaacgctcaagt 132  Q
    |||||||||||||||||||| ||||||| ||||||||    
T  30654585 ggtgcctgcagacacgttaatactccaatgctcaagt 30654621  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 132
Target Start/End: Complemental strand, 30808706 - 30808670
Alignment:
Q  96 ggtgcctgcagacacgttaacactccaacgctcaagt 132  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  30808706 ggtgcctgcagacacgttagcactccaacactcaagt 30808670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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