View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5224-Insertion-5 (Length: 234)
Name: NF5224-Insertion-5
Description: NF5224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5224-Insertion-5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 7 - 234
Target Start/End: Original strand, 39823557 - 39823784
Alignment:
| Q |
7 |
aagcacaatatgctcatcttctttcttcaatccccatccagcagcatgttcatcaagcatagctttcacctcaccaacacattcctcaccaaatccaatc |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39823557 |
aagcacaatatgctcatcttctttcttcaatccccatccagcagcatgttcatcaagcatagctttcacctcaccaacacattcctcaccaaatccaatc |
39823656 |
T |
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| Q |
107 |
ccttgaaaattagcatttctcattctttgttcccatttgcttatgggttcaactctctcaactctttgaacaccttcatgagctatcacattttcaatct |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39823657 |
ccttgaaaattagcatttctcattctttgttcccatttgcttataggttcaactctctcaactctttgaacaccttcatgagctatcacattttcaatct |
39823756 |
T |
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| Q |
207 |
tccaacaaatatccgcttcataccattg |
234 |
Q |
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||||||||||||| |||||||||||||| |
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| T |
39823757 |
tccaacaaatatctgcttcataccattg |
39823784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 23 - 225
Target Start/End: Complemental strand, 5617844 - 5617642
Alignment:
| Q |
23 |
tcttctttcttcaatccccatccagcagcatgttcatcaagcatagctttcacctcaccaacacattcctcaccaaatccaatcccttgaaaattagcat |
122 |
Q |
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|||||||||||||||||||||||| | ||||| ||||||||||| || || ||||| ||| | ||||||| || | || |||||||||| |||| |
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| T |
5617844 |
tcttctttcttcaatccccatccaactgcatgctcatcaagcatggccttaacctccaaaaccgaatcctcactgaaacaaaccccttgaaaacgtgcat |
5617745 |
T |
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| Q |
123 |
ttctcattctttgttcccatttgcttatgggttcaactctctcaactctttgaacaccttcatgagctatcacattttcaatcttccaacaaatatccgc |
222 |
Q |
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| T |
5617744 |
ttctcattcgtttctcccacttggttttagactcgactctctcgactctttgaatcccttcatatgctatcacattctcaaccttccaacaaatttcagc |
5617645 |
T |
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| Q |
223 |
ttc |
225 |
Q |
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||| |
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| T |
5617644 |
ttc |
5617642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 23 - 225
Target Start/End: Complemental strand, 21163131 - 21162929
Alignment:
| Q |
23 |
tcttctttcttcaatccccatccagcagcatgttcatcaagcatagctttcacctcaccaacacattcctcaccaaatccaatcccttgaaaattagcat |
122 |
Q |
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|||||||||||||||||||||||| | ||||| ||||||||||| || || ||||| ||| | ||||||| || | || |||||||||| |||| |
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| T |
21163131 |
tcttctttcttcaatccccatccaactgcatgctcatcaagcatggccttaacctccaaaaccgaatcctcactgaaacaaaccccttgaaaacgtgcat |
21163032 |
T |
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| Q |
123 |
ttctcattctttgttcccatttgcttatgggttcaactctctcaactctttgaacaccttcatgagctatcacattttcaatcttccaacaaatatccgc |
222 |
Q |
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||||||||| || ||||| ||| || | | || |||||||| |||||||||| ||||||| ||||||||||| |||| |||||||||||| || || |
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| T |
21163031 |
ttctcattcgtttctcccacttggttttagactcgactctctcgactctttgaatcccttcatatgctatcacattctcaaccttccaacaaatttcagc |
21162932 |
T |
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| Q |
223 |
ttc |
225 |
Q |
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||| |
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| T |
21162931 |
ttc |
21162929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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