View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5224_high_11 (Length: 352)
Name: NF5224_high_11
Description: NF5224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5224_high_11 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 101 - 352
Target Start/End: Complemental strand, 34422047 - 34421796
Alignment:
| Q |
101 |
atttataccaaaacaaatacagcttttaacagaaagaaataaaaagagaatcaaccccacaaatacacacatccatgagaaaaaagtttttatccgaagt |
200 |
Q |
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| T |
34422047 |
atttataccaaaacaaatacagcttttaacagaaagaaagaaaaagagaatcaaccccacaaatacacacatccatgagaaaaaagtttttatccgaagt |
34421948 |
T |
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| Q |
201 |
tggctgaagccaatgaataggagaataatttgaaacaaataagtcaatacaaaatacaaaaacaccttatgattgttttccagtgagtctaccaatcaag |
300 |
Q |
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| T |
34421947 |
tggctgaagccaatgaataggagaataatttgaaacaaataagtcaatacaaaatacaaaaacaccttatgattgttttccagtgagtctaccaatcaag |
34421848 |
T |
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| Q |
301 |
cctataacaaaataattaaattccaaggtcatctggtttcagatgatagata |
352 |
Q |
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| T |
34421847 |
cctataacaaaataattaaattccaaggtcatctggtttcagatgatagata |
34421796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 10 - 84
Target Start/End: Complemental strand, 34423372 - 34423298
Alignment:
| Q |
10 |
ccacagaccaccaccatccttttcacttcacaaattaaactggtttttactattcaaataaaaacttgttcaatc |
84 |
Q |
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| T |
34423372 |
ccacagaccaccaccgtccttttcacttcacaaactaaactggtttttactattcaaataaaaacttgttcaatc |
34423298 |
T |
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