View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5224_high_12 (Length: 352)
Name: NF5224_high_12
Description: NF5224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5224_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 23017077 - 23017425
Alignment:
| Q |
1 |
tgtggagtagcagagacaatcactgtctttccttcattgatattggacaaaaactcatccaaaccttggttattcagcaataccgtctccgctgatgtca |
100 |
Q |
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||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23017077 |
tgtggagaaacagacacaatcactgtctttccttcattgatattggacaaaaactcatccaaaccttggttattcagcaataccgtctccgctgatgtca |
23017176 |
T |
|
| Q |
101 |
cacatccactgcattacaaaacaaacttagaaactacggtttttacattatcaactacatcatagacnnnnnnnnnnnnnnnnnaaaactcagtatccga |
200 |
Q |
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| T |
23017177 |
cacatccactgcattacaaaacaaacttagaaactacggtttttacattatcaactacatcatagactattttttttttttt--aaaactcagtatccga |
23017274 |
T |
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| Q |
201 |
ctgaagacaaccgtccactagcaggggcctaattgatgctagaacaaagctctacatggattggccccacccaaacatacttagttattaatggaaaaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23017275 |
ctgaagacaaccgtccactagcaggggcctaattgatgctagaacaaagctctacatggattggccccacccaaacatacttagttattaatggaaaaaa |
23017374 |
T |
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| Q |
301 |
gtaactaacttgacggaagcataacaaaataaaagtggagggggagtaacc |
351 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23017375 |
gtaactaacttgacggaagcataacaaaataaaagtggagggggagtaacc |
23017425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 54914473 - 54914348
Alignment:
| Q |
1 |
tgtggagtagcagagacaatcactgtctttccttcattgatattggacaaaaactcatccaaaccttggttattcagcaataccgtctccgctgatgtca |
100 |
Q |
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||||||| | |||| |||||||||| |||||||| ||| |||||||||| |||||||||||||||||| || | ||||| |||||||| |||||||| | |
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| T |
54914473 |
tgtggagaaacagacacaatcactgcctttcctttattaatattggacagaaactcatccaaaccttgcttctccagcataaccgtctctgctgatgtga |
54914374 |
T |
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| Q |
101 |
cacatccactgcattacaaaacaaac |
126 |
Q |
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||||||||||| ||||| |||||||| |
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| T |
54914373 |
cacatccactgtattaccaaacaaac |
54914348 |
T |
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