View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5224_high_13 (Length: 349)
Name: NF5224_high_13
Description: NF5224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5224_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 594927 - 595269
Alignment:
| Q |
1 |
gtgaaggtcttcatgatgaacctttcgcaaccatttatttgtgggttctttaaggatccgcataagaaagctttgccgtaagaatcttaaactgtcgatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
594927 |
gtgaaggtcttcatgatgaacctttcgcaaccatttatttgtgggttctttaaggatccgcataagaaagctttgccgtaagaatcttaaactgtcaatg |
595026 |
T |
|
| Q |
101 |
caaatgaataatatttttcttattgttctttaaggatttgcattctaggattcatgtatatgggctatgttttctgaaatgagagtaaagcaagaatatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
595027 |
caaatgaataatatttttcttattgttctttaaggatttgcattctaggattcatgtatatgggctatgttttctgaaatgagagtaaagcaagaatatt |
595126 |
T |
|
| Q |
201 |
ttccaaagttcatcattaatttgcagatttgtacccttgcagttttgcttttacaacttatcacgggttcataagtagtcgactaagtactcaaatgaac |
300 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
595127 |
ttccaaagttcatcattaatttgcagatttgtaccattgcagttttgcttttacaacttatcacgggttcataagtagtcgactaagtactcaaatgaac |
595226 |
T |
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| Q |
301 |
gtataaatcttggatggattgtctgtcgccctctctgtggtgc |
343 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||| |
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| T |
595227 |
gtataaatcttggatggattgtctgtcgccctctctctggtgc |
595269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 8e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 28168966 - 28168753
Alignment:
| Q |
1 |
gtgaaggtcttcatgatgaacctttcgcaaccatttatttgtgggttctttaaggatccgcataagaaagctttgccgtaagaatcttaaactgtcga-t |
99 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||| || | |||||| |||||||| || |||||||| ||||||||||||| |||||||| | | |
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| T |
28168966 |
gtgaaggtcttcatgatgaacctttctgcaccatttatctgcgagttcttcaaggatccacaggagaaagctctgccgtaagaatcctaaactgttaaat |
28168867 |
T |
|
| Q |
100 |
gcaaatgaataatatttttcttattgttctttaaggatttgcattctaggattcatgtatatgggctatgttttctgaaatgagagtaaagcaagaatat |
199 |
Q |
| |
|
|||| ||| || |||||||||||| |||||||||||||||||||| ||||||| |||||||| ||||||||| ||||||||| | ||||||||| || |
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| T |
28168866 |
tgaaataaattatttttttcttattgatctttaaggatttgcattctgggattcaggtatatggactatgtttttggaaatgagactgaagcaagaacat |
28168767 |
T |
|
| Q |
200 |
tttccaaagttcat |
213 |
Q |
| |
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|||||||||||||| |
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| T |
28168766 |
tttccaaagttcat |
28168753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 5 - 213
Target Start/End: Original strand, 22476765 - 22476977
Alignment:
| Q |
5 |
aggtcttcatgatgaacctttcgcaaccatttatttgtgggttctttaaggatccgcataagaaagctttgccgtaagaatcttaaactgtcga-tgcaa |
103 |
Q |
| |
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|||| ||||||||||||||||| ||| ||||| |||| |||||| |||||||| || |||||||| | ||||||||||| | || ||| | | || |
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| T |
22476765 |
aggttttcatgatgaacctttctgcaccctttatctgtgagttcttcaaggatccacaggagaaagctcttccgtaagaatccttcaccgtcaaatttaa |
22476864 |
T |
|
| Q |
104 |
atgaata---atatttttcttattgttctttaaggatttgcattctaggattcatgtatatgggctatgttttctgaaatgagagtaaagcaagaatatt |
200 |
Q |
| |
|
|| |||| || |||||||||||| ||||||||| |||||||||| ||||||| |||||||| |||||| || ||||||||| | ||||| | | ||| |
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| T |
22476865 |
ataaatatttatgtttttcttattgatctttaagggtttgcattctgggattcaggtatatggactatgtatttggaaatgagactgaagcacggacatt |
22476964 |
T |
|
| Q |
201 |
ttccaaagttcat |
213 |
Q |
| |
|
||| ||||||||| |
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|
| T |
22476965 |
ttcgaaagttcat |
22476977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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