View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5224_high_16 (Length: 323)
Name: NF5224_high_16
Description: NF5224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5224_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 45860645 - 45860957
Alignment:
| Q |
1 |
gaatatactacttacaaatcagaagcaagagcatcacctcctggactatcaattcggataacagcagccttgaatttgttcgatgctgagaagaaaaaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45860645 |
gaatatactacttacaaatcagaagcaagagcatcacctcctggactatcaattcggataacagcagccttgaatttgttcgatgctgagaagaaaaaac |
45860744 |
T |
|
| Q |
101 |
agctcagtgtgaccgagaatcaaacaacgacgcacatatgacgagctaaatatatgtaaataacaccgtnnnnnnntttaaagttcagcgtatagcgtaa |
200 |
Q |
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| T |
45860745 |
agctcagtgtgaccgagaatcaaacaacgacgcacatatgacgagctaaatatatgtaaataacacagtaaaaaaatttaaagttcagcgtatagcgtaa |
45860844 |
T |
|
| Q |
201 |
acctgaaaaccaatgttatccttgtgttatggtaggtcaggaaaatagattaggagtatgtacgtttctggttaatacgttagttacataaacaaacata |
300 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
45860845 |
acctgaaaatcaatgttatccttgtgttatggtaggtcaggaaaatagattaggagtatgtacgttgctggttaatacgttagttacataaacaaacata |
45860944 |
T |
|
| Q |
301 |
attaatctctctg |
313 |
Q |
| |
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||||||||||||| |
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| T |
45860945 |
attaatctctctg |
45860957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 10 - 99
Target Start/End: Original strand, 45879130 - 45879219
Alignment:
| Q |
10 |
acttacaaatcagaagcaagagcatcacctcctggactatcaattcggataacagcagccttgaatttgttcgatgctgagaagaaaaaa |
99 |
Q |
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| T |
45879130 |
acttacaaatcagaagcaagagcatcacctcctggactgtcaattcggataatagcagccttgaatttatttgactctgaaaagaaaaaa |
45879219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 56209013 - 56209074
Alignment:
| Q |
16 |
aaatcagaagcaagagcatcacctcctggactatcaattcggataacagcagccttgaattt |
77 |
Q |
| |
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||||||||||| |||||||||||||||||||| | ||||||||||| | ||||||||||||| |
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| T |
56209013 |
aaatcagaagcgagagcatcacctcctggactgttaattcggataataacagccttgaattt |
56209074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 24353325 - 24353237
Alignment:
| Q |
10 |
acttacaaatcagaagcaagagcatcacctcctggactatcaattcggataacagcagccttgaatttgttcgatgctgagaagaaaaa |
98 |
Q |
| |
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|||||||||||||| |||||||| |||||||| ||||| ||||||| ||||| ||||||||| ||||| || || ||||| ||||||| |
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| T |
24353325 |
acttacaaatcagaggcaagagcgtcacctccaggactgtcaattctgataatagcagccttaaatttttttgactctgaggagaaaaa |
24353237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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