View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5224_high_17 (Length: 318)
Name: NF5224_high_17
Description: NF5224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5224_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 39077642 - 39077337
Alignment:
| Q |
1 |
gcatatacattgactcaagtggcatcaaatttcacactacacaaatatcaatatgcatacgcaagaaacagaaacacaatagaactatctttacaaattc |
100 |
Q |
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| T |
39077642 |
gcatatacattgactcaagtggcatcaaatttcacactacacaaatatcaatatgcatacgcaagaaacagaaacacaatagaactatctttacaaattc |
39077543 |
T |
|
| Q |
101 |
aaagacacaaaatttatacaagaggattaatgggaatgaagagcacaggaggagaaatagttcaagttcaaggaggccacattgtaagggcaacaggtag |
200 |
Q |
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| T |
39077542 |
aaagacacaaaatttatacaagaggattaatgggaatgaagagcacaggaggagaaatagttcaagttcaaggaggccacattgtaagggcgacaggtag |
39077443 |
T |
|
| Q |
201 |
aaaagacagacatagtaaggtatacactgcgaaaggtcctcgtgatcgacgtgttcgattatcagcacacacagcaattcaattctatgatgttcaagac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39077442 |
aaaagacagacatagtaaggtatacactgcgaaaggtcctcgtgatcgacgtgttcgattatcagcacacacagcaattcaattctatgatgttcaagac |
39077343 |
T |
|
| Q |
301 |
cgtctc |
306 |
Q |
| |
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|||||| |
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| T |
39077342 |
cgtctc |
39077337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 148 - 299
Target Start/End: Complemental strand, 30768521 - 30768370
Alignment:
| Q |
148 |
ggaggagaaatagttcaagttcaaggaggccacattgtaagggcaacaggtagaaaagacagacatagtaaggtatacactgcgaaaggtcctcgtgatc |
247 |
Q |
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|||||||| ||||||||||| ||||||| ||||| || | || || |||| |||||| | || || ||||| ||||| | ||||||||||| |||| |
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| T |
30768521 |
ggaggagagatagttcaagtagaaggaggacacatagttcgagccaccggtaaaaaagatcgtcacagcaaggtttacacatcaaaaggtcctcgcgatc |
30768422 |
T |
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| Q |
248 |
gacgtgttcgattatcagcacacacagcaattcaattctatgatgttcaaga |
299 |
Q |
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| T |
30768421 |
gcagggttcgactctcagcacacacagccatcgaattctacgatgttcaaga |
30768370 |
T |
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