View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5224_high_19 (Length: 307)
Name: NF5224_high_19
Description: NF5224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5224_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 19433241 - 19433534
Alignment:
| Q |
1 |
cctcctcctgtacaagcagtcgggcatggcgctcaatctcctttcgaaaccgaactgaattcacaccatttggtgagctcctaattgattcaagaaggcg |
100 |
Q |
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| T |
19433241 |
cctcctcctgtacaagcagtcgggcatggcgctcaatctcctttcgaaactgaactgaattcacaccgttaggtgagctcctaattgattcaagaaggcg |
19433340 |
T |
|
| Q |
101 |
agtgcactgttggatctcctcttgaaagtgaatatttttcctcttaccccatttatgtaacttagatgagcaacgtagaacccgatcagtcacttttaca |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
19433341 |
agtgcactgttggatctcctcttgaaagtgaatttttttcctcttaccccatcgatgtaacttagatgagcaacgcagaacccgatcagtcacttctaca |
19433440 |
T |
|
| Q |
201 |
acaccaccatcattctacccttccggttcataaactattataacacttgccgaaatgttgaaccggaaggactctcatattcgtatttccttct |
294 |
Q |
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| T |
19433441 |
acaccaccatcattctacccttcccgttcataaactattataacacttgccaaaatgttgaactggaaggactctcatattcgtatttccttct |
19433534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 133
Target Start/End: Original strand, 13077148 - 13077278
Alignment:
| Q |
3 |
tcctcctgtacaagcagtcgggcatggcgctcaatctcctttcgaaaccgaactgaattcacaccatttggtgagctcctaattgattcaagaaggcgag |
102 |
Q |
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||||| ||||||| || |||||||||||||||| |||| || | |||| | || ||||| ||||| ||||||||||||||||||||||||| ||||| |
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| T |
13077148 |
tcctcatgtacaaacaatcgggcatggcgctcattctctttgaggaacctagttgtattcatgccattaggtgagctcctaattgattcaagaatgcgag |
13077247 |
T |
|
| Q |
103 |
tgcactgttggatctcctcttgaaagtgaat |
133 |
Q |
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| T |
13077248 |
tgcattgttgtatctcctcctgaaagtgaat |
13077278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 223
Target Start/End: Complemental strand, 18716444 - 18716241
Alignment:
| Q |
21 |
cgggcatggcgctcaatctcctttcgaaaccgaactgaattcacaccatttggtgagctcctaattgattcaagaaggcgagtgcactgttggatctcct |
120 |
Q |
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||||||||||||||| |||| | | |||| | ||| |||||||||||| || ||||||||||||||||||| || || | |||| ||||| ||||||| |
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| T |
18716444 |
cgggcatggcgctcattctcttcgcagaacctagctgtattcacaccattaggagagctcctaattgattcaataatgcaaatgcattgttgtatctcct |
18716345 |
T |
|
| Q |
121 |
cttgaaagtgaatatttttcctcttaccc-catttatgtaacttagatgagcaacgtagaacccgatcagtcacttttacaacaccaccatcattctacc |
219 |
Q |
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||||||||||||| || |||||||| || | ||||| ||||||| || |||||||||||| || ||||| ||||||||||| | ||||| ||| |
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| T |
18716344 |
cttgaaagtgaattcgctttttcttaccctcaatgttgtaaagtagatgaaaaatgtagaacccgattagacacttctacaacaccactaccattccacc |
18716245 |
T |
|
| Q |
220 |
cttc |
223 |
Q |
| |
|
|||| |
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|
| T |
18716244 |
cttc |
18716241 |
T |
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