View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5224_high_7 (Length: 361)
Name: NF5224_high_7
Description: NF5224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5224_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 25 - 348
Target Start/End: Complemental strand, 47013544 - 47013221
Alignment:
| Q |
25 |
atttttatgttactttacttctgcttgtttcatttcagttttttggttcatagtagttgtgtattgtgtctgagattgacttttgtctcgtatatgctga |
124 |
Q |
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| T |
47013544 |
atttttatgttactttacttctgcctgtttcatttcagttttttggttcatagtagttgtgtattgtgtctgagattgacttttgtctcgtatatgctga |
47013445 |
T |
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| Q |
125 |
ttcagtgtatcgtatttatgattagataatgaatttagcttccttgatgctatgaaaatttgttatcgaattgcatttgttgatggttttactggtttga |
224 |
Q |
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| T |
47013444 |
ttcagtgtatcgtatttatgattagataatgaatttagcttccttgatgctatgaaaatttgttatcgaattgcatttgttgatggttttactggtttga |
47013345 |
T |
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| Q |
225 |
cattgaaaaactacaaggattgcagtttttcattgttattgtcttactgaacatactaaatttgtgcttatacttgtcgccattgctgcatttgttttcc |
324 |
Q |
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| T |
47013344 |
cattgaaaaactacaaggattgcagtttttcattgttattgtcttactgaacatactaaatttgtgcttatactggtcgccattgctgcatttgttttcc |
47013245 |
T |
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| Q |
325 |
gctggtgcatggatcgttctgtct |
348 |
Q |
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| T |
47013244 |
gctggtgcatggatcgttctgtct |
47013221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 78 - 177
Target Start/End: Complemental strand, 47011016 - 47010917
Alignment:
| Q |
78 |
tagttgtgtattgtgtctgagattgacttttgtctcgtatatgctgattcagtgtatcgtattt-atgattagataatgaatttagcttccttgatgcta |
176 |
Q |
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| T |
47011016 |
tagttgtctattg-gtctgagattgacgtttgtctcatgtatgctgattcagtgtctcgtattttatgattagacaatgaatttagcttccttgatgcta |
47010918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 274 - 344
Target Start/End: Complemental strand, 47010850 - 47010780
Alignment:
| Q |
274 |
aacatactaaatttgtgcttatacttgtcgccattgctgcatttgttttccgctggtgcatggatcgttct |
344 |
Q |
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||||| ||||||||||| | |||||| | ||||||||||||||||||| |||||||||||||| ||||| |
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| T |
47010850 |
aacatgctaaatttgtgttcatacttcttttcattgctgcatttgttttctgctggtgcatggattgttct |
47010780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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