View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5224_high_8 (Length: 359)
Name: NF5224_high_8
Description: NF5224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5224_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 270 - 354
Target Start/End: Complemental strand, 8784662 - 8784575
Alignment:
| Q |
270 |
tcctaatactagatacaataacaacaa---ggctctaatcctagatataagagatttcaattttaaatttttcgcattaacaccaaac |
354 |
Q |
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| T |
8784662 |
tcctaatactagatacaacaacaacaacaaggctctaatcctagatataagagatttcaattttaaatttttcgcattaactccaaac |
8784575 |
T |
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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 301 - 354
Target Start/End: Complemental strand, 8790704 - 8790651
Alignment:
| Q |
301 |
ctaatcctagatataagagatttcaattttaaatttttcgcattaacaccaaac |
354 |
Q |
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| T |
8790704 |
ctaatcctagatataagagattccaattttacagttttcgcattaactccaaac |
8790651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 8790780 - 8790728
Alignment:
| Q |
203 |
tatagttcagtgatgagtttaattgcacataaatagtcttgcctgtgcagatt |
255 |
Q |
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| T |
8790780 |
tatagttcagtgattagtttaattgtacataaacattgttgcatgtgcagatt |
8790728 |
T |
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