View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5224_high_9 (Length: 357)
Name: NF5224_high_9
Description: NF5224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5224_high_9 |
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| [»] chr7 (2 HSPs) |
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| [»] scaffold0197 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 13 - 357
Target Start/End: Complemental strand, 3930654 - 3930306
Alignment:
| Q |
13 |
aattctaaatataaaatggaataatatatcaacaaaataatcctattggtcactttctaatgccatggatcgctatccgcgtattcaccccttcaaacac |
112 |
Q |
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| T |
3930654 |
aattctaaatataaaatggaata---tatcaacaaaataatcctattggtcactttccaatgccacggatcgctatctgcatactcaccccttcaaacac |
3930558 |
T |
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| Q |
113 |
tcacagccgtcgataacctttcccatcaacggccaccattctcccaatctcatcttcccaaaacttgtcaaaatcttcacaattcccgctttttccctca |
212 |
Q |
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| T |
3930557 |
tcacagccgtcgataacctttcccatcaacggccaccattctcccaatctcatcttcccaaaacttctcaaaatcttcacaattcccgctttttccctca |
3930458 |
T |
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| Q |
213 |
ttctataaattcc---acacacttctttcactctcatcgcaatcttaaatttcattccctctctcaattaaacaaaaccccaattttctttctctccaat |
309 |
Q |
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||||||||||||| | ||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3930457 |
ttctataaattcccaaaaacacttccttcactctcatcgcaatctcaaatctcattccctctctcaattaaacaaaaccccaattttctttctctccaat |
3930358 |
T |
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| Q |
310 |
ttctc----ttcccaatggcacgtaccaaacaaacagcacgaaaatccaccg |
357 |
Q |
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| T |
3930357 |
ttctctctgttcccaatggcacgtaccaaacaaacagcacgaaaatccaccg |
3930306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 320 - 357
Target Start/End: Original strand, 21317320 - 21317357
Alignment:
| Q |
320 |
aatggcacgtaccaaacaaacagcacgaaaatccaccg |
357 |
Q |
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| T |
21317320 |
aatggcacgtaccaaacaaacagcacgcaaatccaccg |
21317357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 166
Target Start/End: Original strand, 13575826 - 13575939
Alignment:
| Q |
52 |
atcctattggtcactttctaatgccatggatcgctatccgcgtattcaccccttcaaacactcacagccgtcgataacctttcccatcaacggccaccat |
151 |
Q |
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| T |
13575826 |
atcctattggtcattttcttgtgccacggatcgcaatcctcgtattgatcattt-aaacactcaccaccgtcgataactattctcatcaacggccaccat |
13575924 |
T |
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| Q |
152 |
tctcccaatctcatc |
166 |
Q |
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| T |
13575925 |
tctcccaatttcatc |
13575939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 56 - 160
Target Start/End: Original strand, 13565403 - 13565507
Alignment:
| Q |
56 |
tattggtcactttctaatgccatggatcgctatccgcgtattcaccccttcaaacactcacagccgtcgataacctttcccatcaacggccaccattctc |
155 |
Q |
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||||||||||||||| ||||| ||||||| |||| ||||| | | ||| |||||||||| ||||||||||| || |||||||||||||||||||| |
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| T |
13565403 |
tattggtcactttcttgtgccacggatcgcaatccccgtatcaatctctttaaacactcactaccgtcgataactattgtcatcaacggccaccattctc |
13565502 |
T |
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| Q |
156 |
ccaat |
160 |
Q |
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|||| |
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| T |
13565503 |
tcaat |
13565507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 284 - 357
Target Start/End: Original strand, 13576054 - 13576131
Alignment:
| Q |
284 |
aaaccccaattttctttctctccaatttc----tcttcccaatggcacgtaccaaacaaacagcacgaaaatccaccg |
357 |
Q |
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|||||| ||||||||||||||||| |||| ||||| |||||||||||||||||||||||| || |||||||||| |
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| T |
13576054 |
aaaccctaattttctttctctccactttccctctcttcaaaatggcacgtaccaaacaaacagcccgcaaatccaccg |
13576131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0197 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0197
Description:
Target: scaffold0197; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 320 - 357
Target Start/End: Original strand, 30758 - 30795
Alignment:
| Q |
320 |
aatggcacgtaccaaacaaacagcacgaaaatccaccg |
357 |
Q |
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| T |
30758 |
aatggcacgtaccaaacaaacagcacgcaaatccaccg |
30795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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