View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5225-Insertion-1 (Length: 809)

Name: NF5225-Insertion-1
Description: NF5225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5225-Insertion-1
NF5225-Insertion-1
[»] chr7 (2 HSPs)
chr7 (428-809)||(1801101-1801482)
chr7 (76-350)||(1801560-1801834)
[»] chr6 (10 HSPs)
chr6 (435-776)||(2829142-2829486)
chr6 (435-776)||(2842548-2842892)
chr6 (435-776)||(2832728-2833072)
chr6 (558-770)||(14578259-14578471)
chr6 (435-773)||(2859992-2860333)
chr6 (478-758)||(2884610-2884893)
chr6 (435-758)||(2865377-2865703)
chr6 (638-758)||(2909641-2909760)
chr6 (435-522)||(2909435-2909522)
chr6 (20-75)||(7999424-7999479)
[»] chr8 (1 HSPs)
chr8 (17-75)||(9230982-9231040)
[»] chr4 (2 HSPs)
chr4 (17-75)||(18351548-18351606)
chr4 (477-515)||(44396656-44396694)
[»] chr5 (2 HSPs)
chr5 (27-75)||(2914974-2915022)
chr5 (33-75)||(40808362-40808404)
[»] chr2 (1 HSPs)
chr2 (36-75)||(30242333-30242372)
[»] chr1 (1 HSPs)
chr1 (484-522)||(2178209-2178247)


Alignment Details
Target: chr7 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 428 - 809
Target Start/End: Complemental strand, 1801482 - 1801101
Alignment:
Q  428 caagtgcttgaatcaaattcttcaaactagtctcgacatcttcattcacagacttaggcatcaaattctcagcaacatcagcaggtgtcatattaataac 527  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1801482 caagtgcttgaatcaaattcttcaaactagtctcgacatcttcattcacagacttaggcatcaaattctcagcaacatcagcaggtgtcatattaataac 1801383  T
Q  528 ttccaacaaatcaccaatttcatcaaacaaatcatgtgactcaatatccaaataattcttaacaagaaccttaaaagcttcaaaacaacaataagataac 627  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1801382 ttccaacaaatcaccaatttcatcaaacaaataatgtgactcaatatccaaataattcttaacaagaaccttaaaagcttcaaaacaacaataagataac 1801283  T
Q  628 tcaacatgtttatccatccttcctgtcctaataagagctggatcaagtttctccacaaaattcgtcgtgaaaattataatcctctctcctccacacgcag 727  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |    
T  1801282 tcaacgtgtttatccatccttcctgtcctaataagagctggatcaagtttctccacaaaattcgtcgtgaaaattataatcctctcccctccacacgcgg 1801183  T
Q  728 accaaattccatcaataaaattcaataaaccagataaagttaccttactatttttactattattctcttcttcctctttttt 809  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  1801182 accaaattccatcaataaaattcaataaaccagataaagttaccttactatttttactgttattttcttcttcctctttttt 1801101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 76 - 350
Target Start/End: Complemental strand, 1801834 - 1801560
Alignment:
Q  76 tgaatgtacatcaaacatttcatttatgagaatgacaaatatcttactttttaacatccaaattaatataacatatttgaataatagatgatttcacaac 175  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1801834 tgaatgtacatcaaacatttcctttatgagaatgacacatatcttactttttaacatccaaattaatataacatatttgaataatagatgatttcacaac 1801735  T
Q  176 aaattgagctatatgagaacatttagatctacaaacacaataaagtacctatcaaaagaaacaaatacacatttcaactcctaataatgttactaaatag 275  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1801734 aaattgagctatatgagaacatttagatctacaaacacaataaactacctatcaaaagaaacaaatacacatttcaactcctaataatgttactaaatag 1801635  T
Q  276 atgtttcaaccacattgtaacaatatatctccatcacaaaagcatattatttttcacactcacaatgtaaccatt 350  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1801634 atgtttcaaccacattgtaacaatatatctccatcacaaaagcatattatttttcacactcacaatgtaaccatt 1801560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 5e-46; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 435 - 776
Target Start/End: Complemental strand, 2829486 - 2829142
Alignment:
Q  435 ttgaatcaaattcttcaaactagtctcgacatcttcattcacagacttaggcatcaaattctcagcaacatcagcaggtgtcatattaataacttccaac 534  Q
    |||||||||| ||||||||| ||| || | ||||||||  |  ||||| ||||||||||| ||||||||||||||||||||||||||| |   |||||||    
T  2829486 ttgaatcaaactcttcaaacaagtttcaaaatcttcatcaattgactttggcatcaaattttcagcaacatcagcaggtgtcatattagtcttttccaac 2829387  T
Q  535 aaatcaccaatttcatcaaacaaatcat---gtgactcaatatccaaataattcttaacaagaaccttaaaagcttcaaaacaacaataagataactcaa 631  Q
    || |   ||||      ||| |||||||   | ||||||| |||| |||| |||||  |||| ||||| ||||||| | | | ||||||||| |  || |    
T  2829386 aatttttcaataattggaaataaatcatcatgagactcaacatcccaatagttctttgcaagcaccttgaaagcttgatagctacaataagacatttcta 2829287  T
Q  632 catgtttatccatccttcctgtcctaataagagctggatcaagtttctccacaaaattcgtcgtgaaaattataatcctctctcctccacacgcagacca 731  Q
     ||| ||||||||||||||  ||||||| || || ||||||||||| ||||||||||| || ||||||||||| ||||||||||||||||| ||||||||    
T  2829286 tatgcttatccatccttcccctcctaattagggcaggatcaagtttgtccacaaaatttgttgtgaaaattatgatcctctctcctccacatgcagacca 2829187  T
Q  732 aattccatcaataaaattcaataaaccagataaagttaccttact 776  Q
    ||| ||||||||||||||||| |||||||| | ||||||| ||||    
T  2829186 aatcccatcaataaaattcaacaaaccagaaagagttaccatact 2829142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 435 - 776
Target Start/End: Complemental strand, 2842892 - 2842548
Alignment:
Q  435 ttgaatcaaattcttcaaactagtctcgacatcttcattcacagacttaggcatcaaattctcagcaacatcagcaggtgtcatattaataacttccaac 534  Q
    |||||||||||||||||| | | | || | ||||||| | |  ||||| ||||||||||| ||||||||||||||||||||||||||| |  ||||||||    
T  2842892 ttgaatcaaattcttcaagcaactttcaaaatcttcagtgattgactttggcatcaaattttcagcaacatcagcaggtgtcatattagtctcttccaac 2842793  T
Q  535 aa---atcaccaatttcatcaaacaaatcatgtgactcaatatccaaataattcttaacaagaaccttaaaagcttcaaaacaacaataagataactcaa 631  Q
    ||    |||  ||||  |   ||   ||||||  |||||| ||| || || ||  |  |||||||||||||||||| | | | ||||||||| |  || |    
T  2842792 aacttttcaataattggaaataaatcatcatgaaactcaacatctaagtagtttcttgcaagaaccttaaaagcttgatagctacaataagacatttcta 2842693  T
Q  632 catgtttatccatccttcctgtcctaataagagctggatcaagtttctccacaaaattcgtcgtgaaaattataatcctctctcctccacacgcagacca 731  Q
     ||| |||||||| |||||| |||| |||||||| ||||||||||| ||||||||||| || ||||||||||| |||||||||  |||||| || |||||    
T  2842692 tatgcttatccattcttcctctccttataagagcaggatcaagtttatccacaaaattagttgtgaaaattatgatcctctctgatccacatgctgacca 2842593  T
Q  732 aattccatcaataaaattcaataaaccagataaagttaccttact 776  Q
    ||||||||||||||||||||| ||||| || | ||||||||||||    
T  2842592 aattccatcaataaaattcaacaaacccgaaagagttaccttact 2842548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 435 - 776
Target Start/End: Original strand, 2832728 - 2833072
Alignment:
Q  435 ttgaatcaaattcttcaaactagtctcgacatcttcattcacagacttaggcatcaaattctcagcaacatcagcaggtgtcatattaataacttccaac 534  Q
    |||||||||||||||||| | | | || | ||||||| | |  ||||| ||||||||||||||||||||||||||||||||||||||| |  || |||||    
T  2832728 ttgaatcaaattcttcaagcaactttcaaaatcttcagtgattgactttggcatcaaattctcagcaacatcagcaggtgtcatattagtctctcccaac 2832827  T
Q  535 aaatcaccaatttcatcaaacaaatcat---gtgactcaatatccaaataattcttaacaagaaccttaaaagcttcaaaacaacaataagataactcaa 631  Q
    || |   ||||      |||||||||||   | | ||||| ||| || || ||  |  |||||||||| ||||||| | | | ||||||||| |  || |    
T  2832828 aacttttcaataattggaaacaaatcatcatgagtctcaacatctaagtagtttcttgcaagaaccttgaaagcttgatagctacaataagacatttcta 2832927  T
Q  632 catgtttatccatccttcctgtcctaataagagctggatcaagtttctccacaaaattcgtcgtgaaaattataatcctctctcctccacacgcagacca 731  Q
     ||| |||||||| |||||  |||| |||||||| ||||||||||| ||||||||||| || ||||||||||| |||||||||  |||||| || |||||    
T  2832928 tatgcttatccattcttcccctccttataagagcaggatcaagtttgtccacaaaatttgttgtgaaaattattatcctctctgatccacatgctgacca 2833027  T
Q  732 aattccatcaataaaattcaataaaccagataaagttaccttact 776  Q
    |||||||||||| |||||||| |||||||| | ||||||||||||    
T  2833028 aattccatcaatgaaattcaacaaaccagaaagagttaccttact 2833072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 558 - 770
Target Start/End: Complemental strand, 14578471 - 14578259
Alignment:
Q  558 atcatgtgactcaatatccaaataattcttaacaagaaccttaaaagcttcaaaacaacaataagataactcaacatgtttatccatccttcctgtccta 657  Q
    |||||| ||||||| |||| ||||||||||  |||| || || || |||||| | | |||||| || |  |||| |||  |||||||||||||  |||||    
T  14578471 atcatgagactcaacatcccaataattctttgcaagcactttgaatgcttcatagctacaatatgacatttcaatatgcatatccatccttcccctccta 14578372  T
Q  658 ataagagctggatcaagtttctccacaaaattcgtcgtgaaaattataatcctctctcctccacacgcagaccaaattccatcaataaaattcaataaac 757  Q
    ||||||||  |||||||||| |||||||| || || ||||||||||| ||||| ||||||||||| || |||||||||||||| ||||||||||| ||||    
T  14578371 ataagagcatgatcaagtttatccacaaagttggttgtgaaaattatgatcctttctcctccacatgccgaccaaattccatcgataaaattcaacaaac 14578272  T
Q  758 cagataaagttac 770  Q
    |||| | ||||||    
T  14578271 cagaaagagttac 14578259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 435 - 773
Target Start/End: Original strand, 2859992 - 2860333
Alignment:
Q  435 ttgaatcaaattcttcaaactagtctcgacatcttcattcacagacttaggcatcaaattctcagcaacatcagcaggtgtcatattaataacttccaac 534  Q
    |||||||||||||||||| | || ||| ||||||||  |    ||||| |||||||||||||| ||||||||||| |||| ||||||| |  || |||||    
T  2859992 ttgaatcaaattcttcaagcaagcctcaacatcttcggtggtcgactttggcatcaaattctcggcaacatcagctggtgacatattagtctctcccaac 2860091  T
Q  535 aaatcaccaatttcatcaaacaaatca---tgtgactcaatatccaaataattcttaacaagaaccttaaaagcttcaaaacaacaataagataactcaa 631  Q
    || |   ||||      ||||||||||   || ||||||| |||||| || |||||| |||||||||| || |||| | | | |||||| || |  || |    
T  2860092 aacttttcaataattggaaacaaatcaccatgagactcaacatccaagtagttcttagcaagaaccttgaacgcttgatagctacaataggacatttcta 2860191  T
Q  632 catgtttatccatccttcctgtcctaataagagctggatcaagtttctccacaaaattcgtcgtgaaaattataatcctctctcctccacacgcagacca 731  Q
      |||||||||||||||||  ||||||| ||||| ||||||||||| ||||||||||| || ||||||||||| ||||  ||||||||||| |  |||||    
T  2860192 tgtgtttatccatccttcccctcctaattagagcaggatcaagtttgtccacaaaattagttgtgaaaattatgatccgttctcctccacatgatgacca 2860291  T
Q  732 aattccatcaataaaattcaataaaccagataaagttacctt 773  Q
    ||||||||||||| ||||||| ||||| || | |||||||||    
T  2860292 aattccatcaatagaattcaacaaacccgaaagagttacctt 2860333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 478 - 758
Target Start/End: Original strand, 2884610 - 2884893
Alignment:
Q  478 gacttaggcatcaaattctcagcaacatcagcaggtgtcatattaataacttccaacaaatcaccaatttcatcaaacaaatca---tgtgactcaatat 574  Q
    ||||| |||||||||||||| |||||||||||||||| ||||||| |  || ||||||| |   ||||      ||||||||||   || ||||||| ||    
T  2884610 gactttggcatcaaattctcggcaacatcagcaggtgacatattagtctctcccaacaacttttcaataattggaaacaaatcaccatgagactcaacat 2884709  T
Q  575 ccaaataattcttaacaagaaccttaaaagcttcaaaacaacaataagataactcaacatgtttatccatccttcctgtcctaataagagctggatcaag 674  Q
    |||| || |||||| |||||||||| || |||| | | | |||||| || |  || |  |||||||||||||||||  ||||||| ||||| ||||||||    
T  2884710 ccaagtagttcttagcaagaaccttgaacgcttgatatctacaataggacatttctatgtgtttatccatccttcccctcctaattagagcaggatcaag 2884809  T
Q  675 tttctccacaaaattcgtcgtgaaaattataatcctctctcctccacacgcagaccaaattccatcaataaaattcaataaacc 758  Q
    ||| ||||||||||| || ||||||||||| ||||  ||||||||||| |  |||||||||||||||||| ||||||| |||||    
T  2884810 tttgtccacaaaattagttgtgaaaattatgatccgttctcctccacatgatgaccaaattccatcaatagaattcaacaaacc 2884893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 435 - 758
Target Start/End: Original strand, 2865377 - 2865703
Alignment:
Q  435 ttgaatcaaattcttcaaactagtctcgacatcttcattcacagacttaggcatcaaattctcagcaacatcagcaggtgtcatattaataacttccaac 534  Q
    |||||||||||||||||| | || ||| ||||||||  |    ||||| |||||||||||||| ||||||||||| |||| ||||||| |  || |||||    
T  2865377 ttgaatcaaattcttcaagcaagcctcaacatcttcggtggtcgactttggcatcaaattctcggcaacatcagctggtgacatattagtctctcccaac 2865476  T
Q  535 aaatcaccaatttcatcaaacaaatca---tgtgactcaatatccaaataattcttaacaagaaccttaaaagcttcaaaacaacaataagataactcaa 631  Q
    || |   ||||      ||||||||||   || ||||||| |||||| || |||||| |||||||||| || |||| | | | |||||| || |  || |    
T  2865477 aacttttcaataattggaaacaaatcaccatgagactcaacatccaagtagttcttagcaagaaccttgaatgcttgatatctacaataggacatttcta 2865576  T
Q  632 catgtttatccatccttcctgtcctaataagagctggatcaagtttctccacaaaattcgtcgtgaaaattataatcctctctcctccacacgcagacca 731  Q
      |||||||||||||||||  ||||||| ||||| ||||||||||| ||||||||||| || ||||||||||| ||||  ||||||||||| |  |||||    
T  2865577 tgtgtttatccatccttcccctcctaattagagcaggatcaagtttgtccacaaaattagttgtgaaaattatgatccgttctcctccacatgatgacca 2865676  T
Q  732 aattccatcaataaaattcaataaacc 758  Q
    ||||||||||||| ||||||| |||||    
T  2865677 aattccatcaatagaattcaacaaacc 2865703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 638 - 758
Target Start/End: Original strand, 2909641 - 2909760
Alignment:
Q  638 tatccatccttcctgtcctaataagagctggatcaagtttctccacaaaattcgtcgtgaaaattataatcctctctcctccacacgcagaccaaattcc 737  Q
    |||||||||||||  |||| |||||||| ||||||||||| ||||||||||| || |||||| |||| ||||| ||||||||||| |  |||||||||||    
T  2909641 tatccatccttcccctccttataagagcaggatcaagtttgtccacaaaattagttgtgaaa-ttatgatcctttctcctccacatgttgaccaaattcc 2909739  T
Q  738 atcaataaaattcaataaacc 758  Q
    ||||||||||||||| |||||    
T  2909740 atcaataaaattcaacaaacc 2909760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 435 - 522
Target Start/End: Original strand, 2909435 - 2909522
Alignment:
Q  435 ttgaatcaaattcttcaaactagtctcgacatcttcattcacagacttaggcatcaaattctcagcaacatcagcaggtgtcatatta 522  Q
    |||||||||||||||||  | |||||| ||||||||| | |  | ||| |||||||||||||||||||||||||||||||||||||||    
T  2909435 ttgaatcaaattcttcacgcaagtctcaacatcttcaatgatcgtctttggcatcaaattctcagcaacatcagcaggtgtcatatta 2909522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 7999424 - 7999479
Alignment:
Q  20 gatatcaatggtgactcattttccaaaatatattcgcacacgtgcacaagaaaatt 75  Q
    |||||||||||||||||||||| |||||||| ||||||||| ||| ||||||||||    
T  7999424 gatatcaatggtgactcatttttcaaaatatcttcgcacacatgctcaagaaaatt 7999479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 9230982 - 9231040
Alignment:
Q  17 gtcgatatcaatggtgactcattttccaaaatatattcgcacacgtgcacaagaaaatt 75  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  9230982 gtcgatatcaatggtgactcattttccaaaatatcttcgcacacgtgcacaagaaaatt 9231040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 18351606 - 18351548
Alignment:
Q  17 gtcgatatcaatggtgactcattttccaaaatatattcgcacacgtgcacaagaaaatt 75  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  18351606 gtcgatatcaatggtgactcattttccaaaatatcttcgcacacgtgcacaagaaaatt 18351548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 477 - 515
Target Start/End: Complemental strand, 44396694 - 44396656
Alignment:
Q  477 agacttaggcatcaaattctcagcaacatcagcaggtgt 515  Q
    |||||||||||| | ||||||||||||||||||||||||    
T  44396694 agacttaggcataagattctcagcaacatcagcaggtgt 44396656  T

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Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 2915022 - 2914974
Alignment:
Q  27 atggtgactcattttccaaaatatattcgcacacgtgcacaagaaaatt 75  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2915022 atggtgactcattttccaaaatatcttcgcacacgtgcacaagaaaatt 2914974  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 75
Target Start/End: Complemental strand, 40808404 - 40808362
Alignment:
Q  33 actcattttccaaaatatattcgcacacgtgcacaagaaaatt 75  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  40808404 actcattttccaaaatatcttcgcacacgtgcacaagaaaatt 40808362  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 75
Target Start/End: Complemental strand, 30242372 - 30242333
Alignment:
Q  36 cattttccaaaatatattcgcacacgtgcacaagaaaatt 75  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  30242372 cattttccaaaatatattcgcacacgtgcacaagaaaatt 30242333  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 484 - 522
Target Start/End: Complemental strand, 2178247 - 2178209
Alignment:
Q  484 ggcatcaaattctcagcaacatcagcaggtgtcatatta 522  Q
    ||||||||||| |||||||||||||| ||||||||||||    
T  2178247 ggcatcaaattttcagcaacatcagctggtgtcatatta 2178209  T

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