View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5225-Insertion-3 (Length: 529)
Name: NF5225-Insertion-3
Description: NF5225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5225-Insertion-3 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 8 - 242
Target Start/End: Original strand, 4384427 - 4384661
Alignment:
| Q |
8 |
taatgttgttgtataagttgtacatagattcaggaaatgattccaaaaggcataaatgtttccttttcttttagttgtttttaagatgatcatgaatttg |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4384427 |
taattttgttgtataagttgtacatagattcaggaaatgattccaaaaggcataaatgtttccttttcttttagttgtttttaagatgatcatgaatttg |
4384526 |
T |
|
| Q |
108 |
attaccatagcatgcttcatttttatgtcatctattaattaattccttgtagaatagaaagagatgatgatatatttcaggtttttctttagcacaaggg |
207 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4384527 |
attaccatggcatgcttcatttttatgtcatctattaattaattccttgtagaatagaaagagatgatgatatatttcaggtttttctttagcacaaggg |
4384626 |
T |
|
| Q |
208 |
aaagtggatcaaatatgatagttcagttctgaata |
242 |
Q |
| |
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| T |
4384627 |
aaagtggatcaaatatgatagttcagttctgaata |
4384661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 215 - 379
Target Start/End: Complemental strand, 4111291 - 4111128
Alignment:
| Q |
215 |
atcaaatatgatagttcagttctgaataattcagagactttatcagtggatgtgaaacttgtaagatattgccaatgaaaatctcatggtttttctttaa |
314 |
Q |
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|||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4111291 |
atcaaatatgatagttcagttctgaa-aattctgagactttagcagtggatgtgaaacttgtaagatattgcaaatgaaaatctcatggtttttctttaa |
4111193 |
T |
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| Q |
315 |
atattttayaaattttgtaaaaatatatagggaatatatttctgatagtaattttaatttaaata |
379 |
Q |
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| T |
4111192 |
atattttataaattttgtaaaaatatatagggaatatacttctgatagtaatttttatataaata |
4111128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 393 - 529
Target Start/End: Original strand, 4384677 - 4384813
Alignment:
| Q |
393 |
ttgtccctgctcattaactcataaaccaacattcaatccattccttcatcacactatcctatcaactttaccaagtttttgtggccggttttcccgatcc |
492 |
Q |
| |
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||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4384677 |
ttgtcactgctcattaactcatgcaccaacattctatccattccttcatcacactatcctatcaactttaccaagtttttgtggccggttttaccgatcc |
4384776 |
T |
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| Q |
493 |
attctcttaacagcaatgacattacaagatgttgcta |
529 |
Q |
| |
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| T |
4384777 |
attctcttaacagcaatgacattacaagatgttgcta |
4384813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 471 - 528
Target Start/End: Complemental strand, 4110454 - 4110397
Alignment:
| Q |
471 |
ttgtggccggttttcccgatccattctcttaacagcaatgacattacaagatgttgct |
528 |
Q |
| |
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|
| T |
4110454 |
ttgtggccggttttaccgatccattctcttaacagcaatgacattacaagatgttgct |
4110397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 403 - 484
Target Start/End: Complemental strand, 4107305 - 4107224
Alignment:
| Q |
403 |
tcattaactcataaaccaacattcaatccattccttcatcacactatcctatcaactttaccaagtttttgtggccggtttt |
484 |
Q |
| |
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|||| |||||||| |||||||||| || |||||| |||||||| ||||| |||||||| |||||||||||||||| |||||| |
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| T |
4107305 |
tcatgaactcatataccaacattctatgcattccctcatcacagtatccaatcaacttgaccaagtttttgtggcaggtttt |
4107224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 400 - 484
Target Start/End: Complemental strand, 4130489 - 4130405
Alignment:
| Q |
400 |
tgctcattaactcataaaccaacattcaatccattccttcatcacactatcctatcaactttaccaagtttttgtggccggtttt |
484 |
Q |
| |
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||||||| |||||||| || ||||||| || || |||||||||||| |||| | |||| |||||||||||||||||| |||||| |
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| T |
4130489 |
tgctcatgaactcatatactaacattctatgcaatccttcatcacaaaatccaaccaaccttaccaagtttttgtggcaggtttt |
4130405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 150 - 191
Target Start/End: Complemental strand, 34687400 - 34687359
Alignment:
| Q |
150 |
ttccttgtagaatagaaagagatgatgatatatttcaggttt |
191 |
Q |
| |
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|||||||||||| |||||||||||||||||||||| |||||| |
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| T |
34687400 |
ttccttgtagaagagaaagagatgatgatatattttaggttt |
34687359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 150 - 191
Target Start/End: Complemental strand, 34709812 - 34709771
Alignment:
| Q |
150 |
ttccttgtagaatagaaagagatgatgatatatttcaggttt |
191 |
Q |
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|||||||||||| |||||||||||||||||||||| |||||| |
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| T |
34709812 |
ttccttgtagaagagaaagagatgatgatatattttaggttt |
34709771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 90
Target Start/End: Complemental strand, 34689484 - 34689437
Alignment:
| Q |
43 |
aatgattccaaaaggcataaatgtttccttttcttttagttgttttta |
90 |
Q |
| |
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||||| |||||||| ||||| | ||||||||||||||||||||||||| |
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| T |
34689484 |
aatgactccaaaagacataattttttccttttcttttagttgttttta |
34689437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 90
Target Start/End: Complemental strand, 34711896 - 34711849
Alignment:
| Q |
43 |
aatgattccaaaaggcataaatgtttccttttcttttagttgttttta |
90 |
Q |
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||||| |||||||| ||||| | ||||||||||||||||||||||||| |
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| T |
34711896 |
aatgactccaaaagacataattttttccttttcttttagttgttttta |
34711849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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