View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5225-Insertion-9 (Length: 223)
Name: NF5225-Insertion-9
Description: NF5225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5225-Insertion-9 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 1e-98; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 25 - 218
Target Start/End: Complemental strand, 31949695 - 31949502
Alignment:
| Q |
25 |
gtcaatggtttatttctctgctaacatctgttaggaaaaacaggttttggtttagcctcttaaaacatccttatacctataccaataccaataccttata |
124 |
Q |
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| T |
31949695 |
gtcaatggtttatttctctgctaacatctgttaggaaaaacaggttttggtttagcatcttaaaacatccttatacctataccaataccaataccttata |
31949596 |
T |
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| Q |
125 |
tgaatggtttgaagtttctcatgattgctccttggagtatcttcatagcgtggaggttcattcacaataggtttccaaacgatgacagcctttc |
218 |
Q |
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| T |
31949595 |
tgaatggtttgaagtttctcatgattgctccttcgagtatcttcatagtgtggaggttcattcacaataggtttccaaacgatgacagcctttc |
31949502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 25 - 217
Target Start/End: Original strand, 31952897 - 31953083
Alignment:
| Q |
25 |
gtcaatggtttatttctctgctaacatctgttaggaaaaacaggttttggtttagcctcttaaaacatccttatacctataccaataccaataccttata |
124 |
Q |
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|||||||||||||||||||| ||||||||||||||| ||||| ||| ||||||||||||||||||||||| |||||||||||||||| | ||||| |
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| T |
31952897 |
gtcaatggtttatttctctgttaacatctgttaggacaaacatgttctggtttagcctcttaaaacatccatatacctataccaatatc------ttata |
31952990 |
T |
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| Q |
125 |
tgaatggtttgaagtttctcatgattgctccttggagtatcttcatagcgtggaggttcattcacaataggtttccaaacgatgacagccttt |
217 |
Q |
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|| | ||||||||||||||| | |||||||||| ||||||| |||| | |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31952991 |
tggagggtttgaagtttctcctaattgctccttcgagtatcgtcattgtgtggaggttcattcacaataggtttccaaacgatgacaaccttt |
31953083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 3497239 - 3497182
Alignment:
| Q |
25 |
gtcaatggtttatttctctgctaacatctgttaggaaaaacaggttttggtttagcct |
82 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
3497239 |
gtcaatggtttatttctctgctaacataagttaggaaaaacaggttctggtttagcct |
3497182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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