View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5225_high_16 (Length: 290)
Name: NF5225_high_16
Description: NF5225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5225_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 19939265 - 19939028
Alignment:
| Q |
13 |
aatatgatccatcaaattgagctagaaattagtactaaaataatagtccttagaatttttcttatctcagacatagatatgcagaaaattaagctcgnnn |
112 |
Q |
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||||||||||||| ||||||||||||||||||||||| ||||||| || |||||||||||||||||||| |||||||||| |||||||||||||||| |
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| T |
19939265 |
aatatgatccatcgaattgagctagaaattagtactataataatattcattagaatttttcttatctca-acatagatatacagaaaattaagctcgaaa |
19939167 |
T |
|
| Q |
113 |
nnnnncttcagtctagaagtttcaagagtttggcaaaagtttaaatcccctaacatcatccaatgtatgaaaactttcaacaagtgaacattacaacgcc |
212 |
Q |
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||||| | ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
19939166 |
aaaaacttcaatttagaatttccaagagtttggcaaaagtttaaatcccctaacatcatccaatgtatgaaaactttcaacaagtgaacattacaatggc |
19939067 |
T |
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| Q |
213 |
atttgccaggaaacctaatgtagaacctagaaaccaaag |
251 |
Q |
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||||||||||||||||||||||||||||||||| ||||| |
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| T |
19939066 |
atttgccaggaaacctaatgtagaacctagaaatcaaag |
19939028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 19915668 - 19915433
Alignment:
| Q |
13 |
aatatgatccatcaaattgagctagaaattagtactaaaataatagtccttagaatttttcttatctcagacatagatatgcagaaaattaagctcgnnn |
112 |
Q |
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||||||||||| ||||||||||||||||| ||||||| | |||| | | || ||| ||||||||||||| ||||||| |||||||| |||| | | |
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| T |
19915668 |
aatatgatccaccaaattgagctagaaataagtactatagtaatggccatt-gaaattttcttatctca-acatagacatgcagaagtctaagttagaat |
19915571 |
T |
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| Q |
113 |
nnnnncttcagtctagaagtttcaagagtttggcaaaagtttaaatcccctaacatcatccaatgtatgaaaactttcaacaagtgaacattacaacgcc |
212 |
Q |
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| T |
19915570 |
aaatt-ttcaatctagaagttccaagagtttagcaaaagttcaaatcccgtaacatcatctaatgtatgaaaacattcaacaagtgaacattactagggc |
19915472 |
T |
|
| Q |
213 |
atttgccaggaaacctaatgtagaacctagaaaccaaag |
251 |
Q |
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| T |
19915471 |
atttggcagtaatcctaatgtagaacctagaaaccaaag |
19915433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 137 - 251
Target Start/End: Original strand, 32837968 - 32838082
Alignment:
| Q |
137 |
agagtttggcaaaagtttaaatcccctaacatcatccaatgtatgaaaactttcaacaagtgaacattacaacgccatttgccaggaaacctaatgtaga |
236 |
Q |
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||||||||||||||| | ||||||| |||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||| | ||||||||||| |
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| T |
32837968 |
agagtttggcaaaagctcaaatcccgtaacatcatctaatgtatgaaaactttcaacaagtgaacattacaaaggcatttgccagtagtcctaatgtaga |
32838067 |
T |
|
| Q |
237 |
acctagaaaccaaag |
251 |
Q |
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||||||| ||||||| |
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| T |
32838068 |
acctagataccaaag |
32838082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 206
Target Start/End: Original strand, 32843380 - 32843571
Alignment:
| Q |
13 |
aatatgatccatcaaattgagctagaaattagtactaaaataatagtccttagaatttttcttatctcagacatagatatgcagaaaattaagctcgnnn |
112 |
Q |
| |
|
||||||||||| ||||||||| ||||||| ||| ||| |||||||||| ||| || |||||||| || |||||||||| | ||||| ||||||| | |
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| T |
32843380 |
aatatgatccaacaaattgagatagaaataagtgctacaataatagtcattaaaaaatttcttatttc-gacatagatacgtagaaatttaagctagaat |
32843478 |
T |
|
| Q |
113 |
nnnnncttcagtctagaagtttcaagagtttggcaaaagtttaaatcccctaacatcatccaatgtatgaaaactttcaacaagtgaacattac |
206 |
Q |
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|||| |||||||||| |||||||||||| |||||| ||||||| |||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
32843479 |
aaaaa-ttcaatctagaagttccaagagtttggcgaaagttcaaatcccgtaacatcatctaatgtatgaaaactttcatcaagtgaacattac |
32843571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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