View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5225_high_2 (Length: 696)
Name: NF5225_high_2
Description: NF5225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5225_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 585; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 585; E-Value: 0
Query Start/End: Original strand, 20 - 671
Target Start/End: Complemental strand, 4632334 - 4631683
Alignment:
| Q |
20 |
tctaaatatggttgttttgtttttattcaataagctcatgaatttataagatatttttaggcttatttcaataagctatcttggagataagctcaaataa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
4632334 |
tctaaatatggttgttttgtttttattcaataagctcatgaatttataagatatttttaggcttatttcaataagctatcttggagataagctcaa-taa |
4632236 |
T |
|
| Q |
120 |
gttatttctataaaatctctaaaactatctcacaagttctgatgctagagacgtgatcgtagggaaatcgaaagatttaaaagagaattctgaagaggaa |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |
|
|
| T |
4632235 |
gttatttctataaaatctctaaaactatctcacaagttctgatgctagagacgtgatcgccgggaaatcgaaagatttaaaagagaattctgaagagaaa |
4632136 |
T |
|
| Q |
220 |
tggtatgtgattgatttgaaagatgataagagtttgatgaacaaggagaatttgaattctaagggaaaatcaagtcatggatcagctttgaaacatatta |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4632135 |
tggtatgtgattgatttgaaagatgataagagtttgatgaacaaggagaatttgaattctaagggaaaatcaagtcatggatcagctttgaaacatatta |
4632036 |
T |
|
| Q |
320 |
atggagcagcttcggtttccgggtttgtttcttctaacaagcatgaaaagagcatatttgattcacctcctttgcataaacaacaaagtgaagggaaaat |
419 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4632035 |
atggagcagcttcggtttccaggtttgtttcttctaacaagcatgaaaagagcatatttgattcacctcctttgcataaacaacaaagtgaagggaaaat |
4631936 |
T |
|
| Q |
420 |
attaatccttgatttttcagatcattttggaaatgtaattttataatccatcaagcacaagtactttagaatcttcgtaatctaagttaacaagcatgat |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
4631935 |
attaatccttgatttttcagatcattttggaaatgtaattttataatccatcaagcacaagtactttagaatcttcgtaatctaagttaacaagcatggt |
4631836 |
T |
|
| Q |
520 |
agacccatcttgaatttcgtatgttat-gtttacagtttttcggaattatatgcatgtaatatgtatgatttgaatcagtttccttttaaccaaattaat |
618 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
4631835 |
agacccatcttgaatttcgtatgttatcgtttacagattttcggaattatatgcatgtagtatgtatgatttaaatcagttttcttttaaccaaattaat |
4631736 |
T |
|
| Q |
619 |
aaatatgtgtttacctacaataatccattccactacaacaaaattttccaaaa |
671 |
Q |
| |
|
|||||||||||| |||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
4631735 |
aaatatgtgtttgcctacaataagtcattcctctacaacaaaattttccaaaa |
4631683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 32443812 - 32443749
Alignment:
| Q |
20 |
tctaaatatggttgttttgtttttattcaataagctcatgaatttataagatatttttaggctt |
83 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
32443812 |
tctaaatatggttgttttgtttttattcattaaactcatgaatttataagatatttttaggctt |
32443749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 565 - 667
Target Start/End: Complemental strand, 27002587 - 27002485
Alignment:
| Q |
565 |
ttatatgcatgtaatatgtatgatttgaatcagtttccttttaaccaaattaataaatatgtgtttacctacaataatccattccactacaacaaaattt |
664 |
Q |
| |
|
|||||||||| |||||| | || || | |||||||| ||||||| || ||||| |||| ||||||| || ||||||| ||||| ||| |||||||||| |
|
|
| T |
27002587 |
ttatatgcatataatatctttgtttgggatcagtttgcttttaagcatattaacaaatctgtgtttgtctgtaataatctattcctctataacaaaattt |
27002488 |
T |
|
| Q |
665 |
tcc |
667 |
Q |
| |
|
||| |
|
|
| T |
27002487 |
tcc |
27002485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 159 - 418
Target Start/End: Complemental strand, 48250458 - 48250199
Alignment:
| Q |
159 |
tgatgctagagacgtgatcgtagggaaatcgaaagatttaaaagagaattctgaagaggaatggtatgtgattgatttgaaagatgataagagtttgatg |
258 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
48250458 |
tgatgctagagacgtgattgcggggaaatcgaaagatttgaaagagaattctgaagaggagtggtctgtgattgacttgaaagatgataagagtttgatg |
48250359 |
T |
|
| Q |
259 |
aacaaggagaatttgaattctaagggaaaatcaagtcatggatcagctttgaaacatattaatggagcagcttcggtttccgggtttgtttcttctaaca |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||| ||||| |||| |
|
|
| T |
48250358 |
aacaaggagaatttgaattctaagggaaaatcaagtcatggatcagctttgaaacagattaaaggagcagcttcggtttttgggtttgtatcttcaaaca |
48250259 |
T |
|
| Q |
359 |
agcatgaaaagagcatatttgattcacctcctttgcataaacaacaaagtgaagggaaaa |
418 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
48250258 |
aacatgaaaagagtatatttgattcacctcctttgcataaacaacaaagtgatgggaaaa |
48250199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 546 - 664
Target Start/End: Complemental strand, 27892811 - 27892693
Alignment:
| Q |
546 |
tgtttacagtttttcggaattatatgcatgtaatatgtatgatttgaatcagtttccttttaaccaaattaataaatatgtgtttacctacaataatcca |
645 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||| |
|
|
| T |
27892811 |
tgtttaccgtttttcggatttatatgcatgtaatatgtatgatttgaatcagtttccttttaaccaaattaacaaatctgtgtttgcctacaataatccg |
27892712 |
T |
|
| Q |
646 |
ttccactacaacaaaattt |
664 |
Q |
| |
|
|||| |||||||||||||| |
|
|
| T |
27892711 |
ttcctctacaacaaaattt |
27892693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 134; Significance: 2e-69; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 436 - 664
Target Start/End: Complemental strand, 12075215 - 12074987
Alignment:
| Q |
436 |
tcagatcattttggaaatgtaattttataatccatcaagcacaagtactttagaatcttcgtaatctaagttaacaagcatgatagacccatcttgaatt |
535 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||| |||| | |||||||||||||||||| ||| ||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
12075215 |
tcagatcgttttggaaatgtaatttta-aatccttcaaacgcaagtactttagaatctttgtactctaagttaactagcatggtagacccatcttgaatt |
12075117 |
T |
|
| Q |
536 |
tcgtatgttat-gtttacagtttttcggaattatatgcatgtaatatgtatgatttgaatcagtttccttttaaccaaattaataaatatgtgtttacct |
634 |
Q |
| |
|
||||||||||| ||||| ||| || ||| |||||| ||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||| ||| |
|
|
| T |
12075116 |
tcgtatgttatcgtttatggttatttggatttatatacatgtaatatgtatgatttgaatcagtttccttttaaacgaattaacaaatatgtgtttgcct |
12075017 |
T |
|
| Q |
635 |
acaataatccattccactacaacaaaattt |
664 |
Q |
| |
|
||||||||||||||| ||| |||||||||| |
|
|
| T |
12075016 |
acaataatccattcctctataacaaaattt |
12074987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 548 - 605
Target Start/End: Original strand, 875454 - 875511
Alignment:
| Q |
548 |
tttacagtttttcggaattatatgcatgtaatatgtatgatttgaatcagtttccttt |
605 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
875454 |
tttacagtttttcggatttatatgcatgtaatatgtatgatttgaattagtatccttt |
875511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 436 - 493
Target Start/End: Original strand, 29737498 - 29737555
Alignment:
| Q |
436 |
tcagatcattttggaaatgtaattttataatccatcaagcacaagtactttagaatct |
493 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| | |||| ||||||||| ||||| |
|
|
| T |
29737498 |
tcaggtcattttggaaatgtaattttataatccataatgcacgagtactttaaaatct |
29737555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 6e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 548 - 671
Target Start/End: Complemental strand, 272756 - 272633
Alignment:
| Q |
548 |
tttacagtttttcggaattatatgcatgtaatatgtatgatttgaatcagtttccttttaaccaaattaataaatatgtgtttacctacaataatccatt |
647 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
272756 |
tttacagtttttcggatttatatgcatgtaatatgtatgatttgaattagtatccttttaaccaaattaataaatatgtgtttgcctacaataatccgtt |
272657 |
T |
|
| Q |
648 |
ccactacaacaaaattttccaaaa |
671 |
Q |
| |
|
| |||||||| ||||||||||| |
|
|
| T |
272656 |
tctttacaacaatattttccaaaa |
272633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University