View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5225_high_21 (Length: 267)
Name: NF5225_high_21
Description: NF5225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5225_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 51122026 - 51122274
Alignment:
| Q |
1 |
catcttatcagtatatggtgcctgtgttgctttctcagtatttaattttatatactttattgtctaggaagctgcagctttttgtcacatgattttggct |
100 |
Q |
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| T |
51122026 |
catcttatcagtatatggtgcttgtgttgctttctcagtatttaattttatatactttattgtctaggaagctgcagctttttgtcacatgattttggct |
51122125 |
T |
|
| Q |
101 |
aatggataaaa-ataattgattgtctcaatttattgcatatttggatgatatttcctctacatcctaagggaaataatccttttttcccttataaaaatg |
199 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
51122126 |
aatggataaaaaataattgattgtctcaatttattgcatatttggatgatatttcctccacatcctaagggaaataatccttttttcccttataaaaatg |
51122225 |
T |
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| Q |
200 |
tatgtcttgtctttgcttgctatgttgttttactcttgtataaattata |
248 |
Q |
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|||| |||||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
51122226 |
tatgccttgtctttgcttgctatgttgctttactcctgtataaattata |
51122274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 126; Significance: 5e-65; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 39016691 - 39016527
Alignment:
| Q |
1 |
catcttatcagtata--tggtgcctgtgttgctttctcagtatttaattttatatactttattgtctaggaagctgcagctttttgtcacatgattttgg |
98 |
Q |
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||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
39016691 |
catcttatcagaataaatggtgcctgtgttgctttctcagtatttaattttatatactttattgtctaggaagctgcagttttttgtcacatgattttgg |
39016592 |
T |
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| Q |
99 |
ctaatggata-aaaataattgattgtctcaatttattgcatatttggatgatatttcctctacat |
162 |
Q |
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| T |
39016591 |
ctaatggataaaaaataattgattgtctcaattcattgcatatttggatgatctttcctccacat |
39016527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 170 - 252
Target Start/End: Complemental strand, 39016478 - 39016394
Alignment:
| Q |
170 |
gaaataatccttttttcccttataaaaatgtatgtcttgtctttgcttgctat--gttgttttactcttgtataaattataggat |
252 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||| ||||||||||||||||| |
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| T |
39016478 |
gaaataatccttttttcccttataaaaatgtatgccttgtctttgcttgctatacactattttactcctgtataaattataggat |
39016394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 200 - 252
Target Start/End: Original strand, 30072729 - 30072781
Alignment:
| Q |
200 |
tatgtcttgtctttgcttgctatgttgttttactcttgtataaattataggat |
252 |
Q |
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|||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
30072729 |
tatgccttgtctttgcttgctatgctgttttactcttgtataaattataggat |
30072781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 213 - 252
Target Start/End: Original strand, 30369309 - 30369348
Alignment:
| Q |
213 |
tgcttgctatgttgttttactcttgtataaattataggat |
252 |
Q |
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| T |
30369309 |
tgcttgctatgttgttttactcctgtataaattataggat |
30369348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 252
Target Start/End: Original strand, 30013026 - 30013077
Alignment:
| Q |
205 |
cttgtctttgcttgctat----gttgttttactcttgtataaattataggat |
252 |
Q |
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|||||||||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
30013026 |
cttgtctttgcttgctatatatgttgttttactcctgtataaattataggat |
30013077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 213 - 252
Target Start/End: Original strand, 38827431 - 38827470
Alignment:
| Q |
213 |
tgcttgctatgttgttttactcttgtataaattataggat |
252 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| |
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| T |
38827431 |
tgcttgctatgttgttttactcctgtataaattataggat |
38827470 |
T |
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