View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5225_high_25 (Length: 238)
Name: NF5225_high_25
Description: NF5225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5225_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 144 - 223
Target Start/End: Complemental strand, 14192743 - 14192664
Alignment:
| Q |
144 |
caaccgggtgatcgacctcgggtacaaaattttcgcccaaggttttcctgtataacttcttgagaacaatgaagggtatt |
223 |
Q |
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| T |
14192743 |
caaccgggttatcgtgctcgggtacaaatctttcgccgatggttttcctgtataacttcttgagaacaatgaagggtatt |
14192664 |
T |
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Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 14192928 - 14192871
Alignment:
| Q |
1 |
cctctgcacaattctagcaacccgatgatcgttccagacctccacatattgagcaacc |
58 |
Q |
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| T |
14192928 |
cctctgcacaattctagcaacccgatgatcgttccaaacctgcacatgttgagcaacc |
14192871 |
T |
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