View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5225_high_26 (Length: 225)
Name: NF5225_high_26
Description: NF5225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5225_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 42893058 - 42893270
Alignment:
| Q |
1 |
tatgggtatattttaaacaaattgattcttgtgtgttgcagtctttgttgaacctgtctgtcgatgtaacctagcaacgcttcgatgaaaagcagcttgc |
100 |
Q |
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| T |
42893058 |
tatgggtatattttaaacaaattgattcttgtgtgttgcagtctttgttgaacctgtctgtcgatgtaacttagcaacgctttgatgaaaagcagcttgc |
42893157 |
T |
|
| Q |
101 |
ccgctaagatttcaaggtccatttgcttttatttcttttcccattgagtgatgttttagtgatagtaaatgtcttggttgtcattgattagagaatgttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
42893158 |
ccgctaagatttcaaggtccatttgcttttatttcttttcccattgagtgatgttttagtgatagtacatgtcttggttgtcattgattagagaatgttt |
42893257 |
T |
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| Q |
201 |
tcgatgtttgatg |
213 |
Q |
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||||||||||||| |
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| T |
42893258 |
tcgatgtttgatg |
42893270 |
T |
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