View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5225_high_5 (Length: 466)
Name: NF5225_high_5
Description: NF5225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5225_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 19 - 453
Target Start/End: Original strand, 36676094 - 36676528
Alignment:
| Q |
19 |
tgttggcctttggcctggaaaagggtgaacacactcacaggcaatattgatgagagtacaaacttcattttcaagtccttccccggtcaaagatttatca |
118 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36676094 |
tgttggcctttggtctggaaaagggtgaacacactcacaggcaatcttaatgagagtacaaacttcattttcaagtccttccccggtcaaagatttatca |
36676193 |
T |
|
| Q |
119 |
ataacattataaaaattcaaagggttaccacatagattagtagtgtcagataaattcgacaattcattatatgttttccctgtcatcaattcaaaaagaa |
218 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| | |
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| T |
36676194 |
ataacattataaaaactcaaagggttaccacatagattagtagtgtcagatgaacgcgacaattcattatatgttttccctgtcatcaattcaaaaagca |
36676293 |
T |
|
| Q |
219 |
cacttccaaagtcgtagacatccttcttaccgtcattcactttaaacatcgtgctgagatgatcttcaatgttgggattcataaatttggcttctccaaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
36676294 |
cacttccaaagtcgtagacatccttcttcccgtcgttcaccttaaacatcatgccaagatgatcttcaatgttgggattcataaatttggcctctccaaa |
36676393 |
T |
|
| Q |
319 |
attgtatattttgggttcaaaattctcatctagcaatatgcattctgaacatatattaaaatgcactatgcccaaatcgcatgtatgatgtagccatgat |
418 |
Q |
| |
|
|||| ||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
36676394 |
attggatatttttggttcaaagttctcatctagcaatatgcattctgaacatatgctaaaatgcactatgcccaaatcgcatgtatgatgcagccatgat |
36676493 |
T |
|
| Q |
419 |
aaccctcttgctattccaagtgcaatgtttaccct |
453 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||| |
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|
| T |
36676494 |
aaccctcttgctattccaaatgcaatgttgaccct |
36676528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 19 - 453
Target Start/End: Original strand, 36673339 - 36673773
Alignment:
| Q |
19 |
tgttggcctttggcctggaaaagggtgaacacactcacaggcaatattgatgagagtacaaacttcattttcaagtccttccccggtcaaagatttatca |
118 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36673339 |
tgttggcctttggtctggaaaagggtgaacacactcacaggcaatcttaatgagagtacaaacttcattttcaagtccttccccggtcaaagatttatca |
36673438 |
T |
|
| Q |
119 |
ataacattataaaaattcaaagggttaccacatagattagtagtgtcagataaattcgacaattcattatatgttttccctgtcatcaattcaaaaagaa |
218 |
Q |
| |
|
|| || ||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
36673439 |
atgacgttataaaaactcaaagggttaccacatagattagtagtgtcagatgaacgcgacaattcattatatgttttccctgtcatcaattcaaaaagca |
36673538 |
T |
|
| Q |
219 |
cacttccaaagtcgtagacatccttcttaccgtcattcactttaaacatcgtgctgagatgatcttcaatgttgggattcataaatttggcttctccaaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| | ||| ||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
36673539 |
cacttccaaagtcgtagacatccttcttcccgtcgtccaccttaaacatcatgccaagatgatcttcaatgttgggattcataaatttggcctctccaaa |
36673638 |
T |
|
| Q |
319 |
attgtatattttgggttcaaaattctcatctagcaatatgcattctgaacatatattaaaatgcactatgcccaaatcgcatgtatgatgtagccatgat |
418 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||| |
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| T |
36673639 |
attggatattttgggttcaaaattctcatctagcaatatgcattctgaacatatattaaaatgcactatgcccaaatcacagctatgatgcagccatgat |
36673738 |
T |
|
| Q |
419 |
aaccctcttgctattccaagtgcaatgtttaccct |
453 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |
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|
| T |
36673739 |
aaccctcttgctattccaagtgcaatgttgaccct |
36673773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 46 - 453
Target Start/End: Original strand, 36683794 - 36684201
Alignment:
| Q |
46 |
aacacactcacaggcaatattgatgagagtacaaacttcattttcaagtccttccccggtcaaagatttatcaataacattataaaaattcaaagggtta |
145 |
Q |
| |
|
|||||||||||| ||||| || | ||||| ||| ||| ||||||||| ||||| ||| | || |||||||||||| ||||||||||||| |||||||| |
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|
| T |
36683794 |
aacacactcacatgcaatctttaggagagcacatactccattttcaaatccttgcccaggcagagatttatcaatggcattataaaaatttgaagggtta |
36683893 |
T |
|
| Q |
146 |
ccacatagattagtagtgtcagataaattcgacaattcattatatgttttccctgtcatcaattcaaaaagaacacttccaaagtcgtagacatccttct |
245 |
Q |
| |
|
|| | |||||||| ||| ||| || | || ||| ||||||||||| ||||| |||| ||||||||| |||||||||||||||||||||||||||| |
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|
| T |
36683894 |
tcatagagattagtggtggtggatgaacgagtcagttcgttatatgtttttcctgtaatcagttcaaaaagcacacttccaaagtcgtagacatccttct |
36683993 |
T |
|
| Q |
246 |
taccgtcattcactttaaacatcgtgctgagatgatcttcaatgttgggattcataaatttggcttctccaaaattgtatattttgggttcaaaattctc |
345 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||| |||||||||||||||||||||| |
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|
| T |
36683994 |
tcccgtcattcactttaaacatcgtgctgagatgatcttcaatgttgggattcataaatttcgcctgcccaaaattggatattttgggttcaaaattctc |
36684093 |
T |
|
| Q |
346 |
atctagcaatatgcattctgaacatatattaaaatgcactatgcccaaatcgcatgtatgatgtagccatgataaccctcttgctattccaagtgcaatg |
445 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||||||||||||||||| || ||||||| ||||||||||| |||||||||| ||||||||||||| |
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|
| T |
36684094 |
atctagcaatatgcattgtgaatatatattaaaatgcactatgcccaaatcacagctatgatggagccatgataatcctcttgctaatccaagtgcaatg |
36684193 |
T |
|
| Q |
446 |
tttaccct |
453 |
Q |
| |
|
|| ||||| |
|
|
| T |
36684194 |
ttgaccct |
36684201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 252
Target Start/End: Original strand, 36695623 - 36695856
Alignment:
| Q |
19 |
tgttggcctttggcctggaaaagggtgaacacactcacaggcaatattgatgagagtacaaacttcattttcaagtccttccccggtcaaagatttatca |
118 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36695623 |
tgttgacctttggtctggaaaagggtgaacacactcacaggcaatcttaatgagagtacaaacttcattttcaagtccttccccggtcaaagatttatca |
36695722 |
T |
|
| Q |
119 |
ataacattataaaaattcaaagggttaccacatagattagtagtgtcagataaattcgacaattcattatatgttttccctgtcatcaattcaaaaagaa |
218 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
36695723 |
ataacattataaaaactcaaagggttaccacatagattagtagtgtcagatgaacgcgacaattcattatatgttttccctgtcatcaattcaaaaagca |
36695822 |
T |
|
| Q |
219 |
cacttccaaagtcgtagacatccttcttaccgtc |
252 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |
|
|
| T |
36695823 |
cacttccaaagtcgtagacatccttcttcccgtc |
36695856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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