View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5225_high_8 (Length: 387)
Name: NF5225_high_8
Description: NF5225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5225_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 10 - 372
Target Start/End: Complemental strand, 43609570 - 43609208
Alignment:
| Q |
10 |
aatgagaatgttactggcacggcttgtttcctggatcatataataaagtattatgttagagaaaatcaagtaaaaactataggaaagaaaaagagagcat |
109 |
Q |
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| T |
43609570 |
aatgagaatgttactggcacggcttgtttcctggaccatataataaagtattacgttagagaaaatcaagtaaaaactataggaaagaaaaacagaacat |
43609471 |
T |
|
| Q |
110 |
atttttcaacattacctttcaaatattaaagctaaagggaccatgataatggctccaatcagttgtctataaaaaacaaacacagatgttttcattcctc |
209 |
Q |
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| T |
43609470 |
atttttcaacattacctttcaaatattaaagctaaagggaccatgataatggctccaatcagttgtctataaaaaacaaacacatatgttttcattcctc |
43609371 |
T |
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| Q |
210 |
cgttaaacacagctttggataacaaagtcatcccagaatatattaattgtattataaacacagccaaatatggacctagttcacccatatttgacagtga |
309 |
Q |
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| T |
43609370 |
cgttaaacacagctttggataacaaagtcatcccagaatatattaattgtattataaacacagccaaatatggacctagttcacccatatttgacagtga |
43609271 |
T |
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| Q |
310 |
aaatgtatatgaatgattgtttacaccttatgattttcatcaatatatcaggtgcatatatat |
372 |
Q |
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| T |
43609270 |
aaatgtatatgaatgattgtttacaccttatgattttcatcaatatatcaagtgcatatatat |
43609208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 10 - 371
Target Start/End: Complemental strand, 43614881 - 43614520
Alignment:
| Q |
10 |
aatgagaatgttactggcacggcttgtttcctggatcatataataaagtattatgttagagaaaa-tcaagtaaaaactataggaaagaaaaagagagca |
108 |
Q |
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||||||||| || |||||||||||||||||||||| |||||||||||||||||||| || ||||| |||||||||| |||||||||||||||| ||| || |
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| T |
43614881 |
aatgagaatattgctggcacggcttgtttcctggaccatataataaagtattatgtcagggaaaaatcaagtaaaa-ctataggaaagaaaaacagaaca |
43614783 |
T |
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| Q |
109 |
tatttttcaacattacctttcaaatattaaagctaaagggaccatgataatggctccaatcagttgtctataaaaaacaaacacagatgttttcattcct |
208 |
Q |
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||||| ||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
43614782 |
tatttatcaacattaccgttcaaatatcaaaaataaagggaccatgataatggctccaatcagctgtctataaaaaacaaacacagatgttttcattcct |
43614683 |
T |
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| Q |
209 |
ccgttaaacacagctttggataacaaagtcatcccagaatatattaattgtattataaacacagccaaatatggacctagttcacccatatttgacagtg |
308 |
Q |
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| T |
43614682 |
ccgttaaacgcggccttggacagcaaagtcatcccagaatatattaattgtagtataaacacagccaaatatggacctagttcacccatatttgacagtg |
43614583 |
T |
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| Q |
309 |
aaaatgtatatgaatgattgtttacaccttatgattttcatcaatatatcaggtgcatatata |
371 |
Q |
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| T |
43614582 |
aaaatgtatatgaataattgattacactttatgattttcaacaatatatcaagtgcatatata |
43614520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 121 - 334
Target Start/End: Complemental strand, 43603024 - 43602805
Alignment:
| Q |
121 |
ttacctttcaaatattaaagctaaagggaccatgataatggctccaatcagttgtctataaaaaacaaacacagatgttttcattcctccgttaaacaca |
220 |
Q |
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||||| ||||||||| ||||| ||||||||||| || |||||||||||||||||||| || || ||||||||||| |||||||||||| |||||||||| |
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| T |
43603024 |
ttaccgttcaaatatcaaagccaaagggaccataatcatggctccaatcagttgtctgtagaagacaaacacagaggttttcattccttcgttaaacacg |
43602925 |
T |
|
| Q |
221 |
gctttggataacaaagtcatcccagaatatattaattgtattataaacacagccaaatatggacctagttcac------ccatatttgacagtgaaaatg |
314 |
Q |
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| T |
43602924 |
gccttggacatcaaggtcatcccggcatatattaattgcattgttaacactgctaaatatggacctagttcactcatagtcatatttgacgatgaaaatg |
43602825 |
T |
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| Q |
315 |
tatatgaatgattgtttaca |
334 |
Q |
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|||||||||||||| ||||| |
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| T |
43602824 |
tatatgaatgattgattaca |
43602805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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